Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.13840 Avicennia marina HOM05D004635 ORTHO05D005899 0.0e+00 1206.0 636 100.0
SGA_v2.0_scaffold146G36254 Striga asiatica HOM05D004635 ORTHO05D005899 4.3e-233 811.6 634 68.6
SalBow6G1328 Salvia bowleyana HOM05D004635 ORTHO05D005899 7.0e-220 767.7 635 68.0
Nitab4.5_0003907g0020 Nicotiana tabacum HOM05D004635 ORTHO05D005899 6.8e-215 751.1 596 65.8
Dinv38955 Davidia involucrata HOM05D004635 ORTHO05D005899 4.9e-213 745.0 635 63.1
CAN.G792.84 Capsicum annuum HOM05D004635 ORTHO05D005899 8.3e-213 744.2 599 64.6
Peaxi162Scf00102g01512 Petunia axillaris HOM05D004635 ORTHO05D005899 3.5e-211 738.8 624 63.1
Lj6A677T80 Lonicera japonica HOM05D004635 ORTHO05D005899 7.8e-211 737.6 642 62.9
Nitab4.5_0004836g0050 Nicotiana tabacum HOM05D004635 ORTHO05D005899 1.5e-209 733.4 619 63.2
Actinidia02016 Actinidia chinensis HOM05D004635 ORTHO05D005899 4.3e-209 731.9 630 61.7
Duzib084G1397 Durio zibethinus HOM05D004635 ORTHO05D005899 5.2e-207 724.9 625 60.6
PGSC0003DMG400029793 Solanum tuberosum HOM05D004635 ORTHO05D005899 8.9e-207 724.2 594 63.6
COL.COLO4_34438 Corchorus olitorius HOM05D004635 ORTHO05D005899 1.3e-205 720.3 633 60.5
Solyc08g007990.3 Solanum lycopersicum HOM05D004635 ORTHO05D005899 4.1e-204 715.3 606 61.4
Thecc.03G276500 Theobroma cacao HOM05D004635 ORTHO05D005899 4.1e-204 715.3 629 59.9
Sopen08g003860 Solanum pennellii HOM05D004635 ORTHO05D005899 1.7e-202 709.9 608 61.2
PGSC0003DMG400005819 Solanum tuberosum HOM05D004635 ORTHO05D005899 1.1e-201 707.2 594 61.1
Gohir.A09G192700 Gossypium hirsutum HOM05D004635 ORTHO05D005899 1.5e-201 706.8 626 61.2
Gorai.006G209700 Gossypium raimondii HOM05D004635 ORTHO05D005899 1.2e-200 703.7 626 61.2
CSS0019840 Camellia sinensis var. sinensis HOM05D004635 ORTHO05D005899 1.6e-200 703.4 631 60.1
Gohir.D09G186900 Gossypium hirsutum HOM05D004635 ORTHO05D005899 1.6e-200 703.4 626 61.2
Cc08_g14490 Coffea canephora HOM05D004635 ORTHO05D005899 1.2e-198 697.2 635 60.6
Hma1.2p1_0377F.1_g139240 Hydrangea macrophylla HOM05D004635 ORTHO05D005899 2.2e-197 693.0 633 59.7
ECA240G4094 Erigeron canadensis HOM05D004635 ORTHO05D005899 3.8e-197 692.2 639 58.5
Atru.chr9.2220 Acer truncatum HOM05D004635 ORTHO05D005899 1.4e-196 690.3 637 59.2
Manes.01G063000 Manihot esculenta HOM05D004635 ORTHO05D005899 2.4e-196 689.5 639 57.9
vmacro11312 Vaccinium macrocarpon HOM05D004635 ORTHO05D005899 1.0e-194 684.1 612 60.3
TAR636G1354 Trochodendron aralioides HOM05D004635 ORTHO05D005899 1.3e-194 683.7 643 58.3
Potri.003G124700 Populus trichocarpa HOM05D004635 ORTHO05D005899 7.3e-193 677.9 637 58.4
PGR042G2640 Punica granatum HOM05D004635 ORTHO05D005899 1.6e-192 676.8 642 58.3
Nn5g27546 Nelumbo nucifera HOM05D004635 ORTHO05D005899 2.8e-192 676.0 633 57.8
Sabra03G0088200 Salix brachista HOM05D004635 ORTHO05D005899 4.8e-192 675.2 634 57.3
Prupe.5G097400 Prunus persica HOM05D004635 ORTHO05D005899 6.2e-192 674.9 631 58.2
TAR629G3080 Trochodendron aralioides HOM05D004635 ORTHO05D005899 6.2e-192 674.9 618 60.2
DCAR_000603 Daucus carota HOM05D004635 ORTHO05D005899 8.1e-192 674.5 636 58.0
VMungo0251G2718 Vigna mungo HOM05D004635 ORTHO05D005899 2.6e-190 669.5 640 55.9
RcHm_v2.0_Chr7g0211871 Rosa chinensis HOM05D004635 ORTHO05D005899 3.4e-190 669.1 631 56.7
Nn1g02763 Nelumbo nucifera HOM05D004635 ORTHO05D005899 1.7e-189 666.8 635 57.0
Eucgr.E00572 Eucalyptus grandis HOM05D004635 ORTHO05D005899 2.9e-189 666.0 656 56.6
TWI81G1014 Tripterygium wilfordii HOM05D004635 ORTHO05D005899 2.9e-189 666.0 637 57.1
Ciclev10019281m.g Citrus clementina HOM05D004635 ORTHO05D005899 4.9e-189 665.2 637 55.7
Aqoxy5G04278 Aquilegia oxysepala HOM05D004635 ORTHO05D005899 1.4e-188 663.7 630 57.0
MD14G1101800 Malus domestica HOM05D004635 ORTHO05D005899 4.2e-188 662.1 631 57.8
Cpa.g.sc202.13 Carica papaya HOM05D004635 ORTHO05D005899 7.1e-188 661.4 628 57.2
HanXRQChr13g0416481 Helianthus annuus HOM05D004635 ORTHO05D005899 2.7e-187 659.4 634 59.3
Glyma.08G013300 Glycine max HOM05D004635 ORTHO05D005899 7.9e-187 657.9 638 56.3
AUR62017259 Chenopodium quinoa HOM05D004635 ORTHO05D005899 3.0e-186 656.0 634 58.0
Hund11485 Selenicereus undatus HOM05D004635 ORTHO05D005899 5.1e-186 655.2 649 56.4
CsaV3_5G002950 Cucumis sativus L. HOM05D004635 ORTHO05D005899 8.7e-186 654.4 631 56.9
MELO3C005661.2 Cucumis melo HOM05D004635 ORTHO05D005899 1.9e-185 653.3 630 56.7
Phvul.002G288000 Phaseolus vulgaris HOM05D004635 ORTHO05D005899 4.3e-185 652.1 640 55.9
Haze_08871 Corylus avellana HOM05D004635 ORTHO05D005899 9.6e-185 651.0 634 57.3
Cfa012156 Carpinus fangiana HOM05D004635 ORTHO05D005899 3.6e-184 649.0 638 57.8
ClCG01G002860 Citrullus lanatus HOM05D004635 ORTHO05D005899 8.1e-184 647.9 655 55.4
QL01p003129 Quercus lobata HOM05D004635 ORTHO05D005899 8.1e-184 647.9 633 58.3
FAN18G0535 Fragaria x ananassa HOM05D004635 ORTHO05D005899 3.1e-183 646.0 627 56.5
Lsat_1_v5_gn_6_87181 Lactuca sativa HOM05D004635 ORTHO05D005899 6.9e-183 644.8 638 56.4
MBI18_g19087_MAGBIO Magnolia biondii HOM05D004635 ORTHO05D005899 6.9e-183 644.8 642 55.9
PSO170G0760 Papaver somniferum HOM05D004635 ORTHO05D005899 9.0e-183 644.4 649 56.1
FvH4_5g23090 Fragaria vesca HOM05D004635 ORTHO05D005899 1.5e-182 643.7 627 56.5
PSO339G4625 Papaver somniferum HOM05D004635 ORTHO05D005899 2.0e-182 643.3 634 57.1
AUR62010616 Chenopodium quinoa HOM05D004635 ORTHO05D005899 3.4e-182 642.5 641 56.8
FAN04G0694 Fragaria x ananassa HOM05D004635 ORTHO05D005899 3.4e-182 642.5 627 56.1
FAN18G1690 Fragaria x ananassa HOM05D004635 ORTHO05D005899 5.8e-182 641.7 627 56.3
GSVIVG01019776001 Vitis vinifera HOM05D004635 ORTHO05D005899 9.9e-182 641.0 629 56.3
FAN13G3179 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.7e-181 640.2 627 55.8
THA.LOC104818064 Tarenaya hassleriana HOM05D004635 ORTHO05D005899 1.7e-181 640.2 635 55.0
PSO017G3139 Papaver somniferum HOM05D004635 ORTHO05D005899 3.2e-180 636.0 642 56.5
TPR.G12861 Trifolium pratense HOM05D004635 ORTHO05D005899 2.1e-179 633.3 637 55.3
PSO384G0809 Papaver somniferum HOM05D004635 ORTHO05D005899 7.9e-179 631.3 648 55.9
Lj4g0017456 Lotus japonicus HOM05D004635 ORTHO05D005899 1.8e-178 630.2 643 54.4
EL10Ac5g12781 Beta vulgaris HOM05D004635 ORTHO05D005899 1.5e-177 627.1 632 56.6
EL10Ac1g00317 Beta vulgaris HOM05D004635 ORTHO05D005899 5.6e-177 625.2 631 56.3
Carub.0007s3429 Capsella rubella HOM05D004635 ORTHO05D005899 9.6e-177 624.4 635 54.8
Aa31LG9G660 Aethionema arabicum HOM05D004635 ORTHO05D005899 6.2e-176 621.7 626 55.1
unitig_37.g12250 Utricularia gibba HOM05D004635 ORTHO05D005899 8.1e-176 621.3 642 60.7
AL7G48240 Arabidopsis lyrata HOM05D004635 ORTHO05D005899 1.1e-175 620.9 642 53.9
Ca_17544_v3 Cicer arietinum L. HOM05D004635 ORTHO05D005899 3.1e-175 619.4 592 56.8
arahy.Tifrunner.gnm1.ann1.NB74KP Arachis hypogaea HOM05D004635 ORTHO05D005899 5.3e-175 618.6 638 54.9
arahy.Tifrunner.gnm1.ann1.Y4HLQF Arachis hypogaea HOM05D004635 ORTHO05D005899 3.4e-174 615.9 595 57.3
Medtr8g098490 Medicago truncatula HOM05D004635 ORTHO05D005899 1.9e-172 610.1 595 56.8
Psat7g034520 Pisum sativum HOM05D004635 ORTHO05D005899 6.0e-171 605.1 592 56.4
AT5G41190 Arabidopsis thaliana HOM05D004635 ORTHO05D005899 1.0e-170 604.4 634 53.5
Sp7g00720 Schrenkiella parvula HOM05D004635 ORTHO05D005899 1.0e-170 604.4 632 54.4
SpUn0010_0200 Schrenkiella parvula HOM05D004635 ORTHO05D005899 1.0e-170 604.4 632 54.4
arahy.Tifrunner.gnm1.ann1.BGY2GF Arachis hypogaea HOM05D004635 ORTHO05D005899 8.7e-170 601.3 633 53.4
CANSAT78G0227 Cannabis sativa HOM05D004635 ORTHO05D005899 8.7e-170 601.3 630 55.2
arahy.Tifrunner.gnm1.ann1.MF5MQE Arachis hypogaea HOM05D004635 ORTHO05D005899 3.7e-168 595.9 592 55.4
ATR0064G111 Amborella trichopoda HOM05D004635 ORTHO05D005899 8.2e-168 594.7 639 54.1
Lalb_Chr05g0224871 Lupinus albus HOM05D004635 ORTHO05D005899 1.8e-167 593.6 632 55.1
Thhalv10027696m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 3.1e-167 592.8 633 54.5
RcHm_v2.0_Chr7g0179141 Rosa chinensis HOM05D004635 ORTHO05D005899 4.1e-167 592.4 637 52.3
BcaB06g27604 Brassica carinata HOM05D004635 ORTHO05D005899 5.9e-166 588.6 637 52.7
C04p48290 Brassica napus HOM05D004635 ORTHO05D005899 1.7e-165 587.0 633 53.2
BcaC02g08976 Brassica carinata HOM05D004635 ORTHO05D005899 5.0e-165 585.5 633 53.1
BolC4t26422H Brassica oleracea HOM05D004635 ORTHO05D005899 5.0e-165 585.5 633 53.1
Sed0015372 Sechium edule HOM05D004635 ORTHO05D005899 6.5e-165 585.1 627 53.3
CiPaw.11G137400 Carya illinoinensis HOM05D004635 ORTHO05D005899 1.0e-162 577.8 542 58.7
BraA07t29762Z Brassica rapa HOM05D004635 ORTHO05D005899 2.5e-161 573.2 631 52.8
A04p14360 Brassica napus HOM05D004635 ORTHO05D005899 5.7e-161 572.0 634 51.9
BraA04t17085Z Brassica rapa HOM05D004635 ORTHO05D005899 1.3e-160 570.9 634 51.7
A07p20710 Brassica napus HOM05D004635 ORTHO05D005899 1.8e-159 567.0 631 52.9
FAN08G3353 Fragaria x ananassa HOM05D004635 ORTHO05D005899 4.1e-159 565.8 554 54.7
Oeu011058.1 Olea europaea HOM05D004635 ORTHO05D005899 1.8e-154 550.4 645 51.3
BcaB02g07904 Brassica carinata HOM05D004635 ORTHO05D005899 8.8e-154 548.1 631 50.6
Glyma.05G206400 Glycine max HOM05D004635 ORTHO05D005899 8.8e-154 548.1 553 55.2
CARHR213190 Cardamine hirsuta HOM05D004635 ORTHO05D005899 7.4e-153 545.0 628 50.8
Sed0018462 Sechium edule HOM05D004635 ORTHO05D005899 1.1e-151 541.2 522 56.7
HPP92_020857 Vanilla planifolia HOM05D004635 ORTHO05D005899 1.8e-151 540.4 646 48.6
SEGI_23350 Sequoiadendron giganteum HOM05D004635 ORTHO05D005899 8.5e-149 531.6 625 46.6
Os02g0114700 Oryza sativa ssp. japonica HOM05D004635 ORTHO05D005899 5.9e-142 508.8 603 48.9
CDE06G0591 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 1.0e-138 498.0 527 51.8
Zm00001eb209610 Zea mays HOM05D004635 ORTHO05D005899 3.1e-135 486.5 608 47.2
BcaC08g44516 Brassica carinata HOM05D004635 ORTHO05D005899 3.2e-132 476.5 632 46.0
Thhalv10009994m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 8.0e-131 471.9 633 46.4
Sc01g0009470 Simmondsia chinensis HOM05D004635 ORTHO05D005899 5.7e-129 465.7 496 55.4
Actinidia14552 Actinidia chinensis HOM05D004635 ORTHO05D005899 2.9e-125 453.4 647 45.7
Migut.A00784 Erythranthe guttata HOM05D004635 ORTHO05D005899 7.5e-121 438.7 440 58.4
Zm00001eb229850 Zea mays HOM05D004635 ORTHO05D005899 6.8e-114 415.6 520 47.1
Pp3c2_34320 Physcomitrium patens HOM05D004635 ORTHO05D005899 9.8e-105 385.2 652 40.3
RcHm_v2.0_Chr7g0211921 Rosa chinensis HOM05D004635 ORTHO05D005899 2.2e-104 384.0 396 53.3
Carub.0004s0410 Capsella rubella HOM05D004635 ORTHO05D005899 9.2e-103 378.6 530 44.3
AagrBONN_evm.TU.Sc2ySwM_362.355 Anthoceros agrestis HOM05D004635 ORTHO05D005899 1.7e-101 374.4 677 39.1
RcHm_v2.0_Chr2g0099081 Rosa chinensis HOM05D004635 ORTHO05D005899 1.5e-97 361.3 540 44.3
Dinv37658 Davidia involucrata HOM05D004635 ORTHO05D005899 1.9e-95 354.4 337 57.3
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 4.9e-88 329.7 456 45.2
C06p19650 Brassica napus HOM05D004635 ORTHO05D005899 2.1e-86 324.3 434 46.3
Dinv37657 Davidia involucrata HOM05D004635 ORTHO05D005899 1.2e-83 315.1 259 64.9
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 2.3e-77 294.3 377 46.7
FAN28G2416 Fragaria x ananassa HOM05D004635 ORTHO05D005899 2.3e-77 294.3 377 46.7
SMO171G0086 Selaginella moellendorffii HOM05D004635 ORTHO05D005899 3.3e-76 290.4 594 34.7
BolC6t37158H Brassica oleracea HOM05D004635 ORTHO05D005899 5.3e-74 283.1 243 61.3
BolC6t37157H Brassica oleracea HOM05D004635 ORTHO05D005899 9.3e-71 272.3 274 53.6
Mapoly0033s0014 Marchantia polymorpha HOM05D004635 ORTHO05D005899 9.0e-66 255.8 571 33.6
CBR_g50931 Chara braunii HOM05D004635 ORTHO05D005899 1.8e-61 241.5 766 29.8
BcaC04g18687 Brassica carinata HOM05D004635 ORTHO05D005899 1.8e-58 231.5 368 41.3
BolC9t58686H Brassica oleracea HOM05D004635 ORTHO05D005899 4.0e-58 230.3 334 43.7
RcHm_v2.0_Chr7g0211961 Rosa chinensis HOM05D004635 ORTHO05D005899 3.4e-57 227.3 202 56.9
C09p58220 Brassica napus HOM05D000111 ORTHO05D000134 3.8e-56 223.8 342 42.4
BcaC08g44514 Brassica carinata HOM05D004635 ORTHO05D005899 5.9e-49 199.9 146 63.0
C06p19660 Brassica napus HOM05D004635 ORTHO05D005899 4.3e-44 183.7 162 59.9
MCO14G249 Micromonas commoda HOM05D004635 ORTHO05D005899 5.9e-41 173.3 522 29.5
VMungo1127G2192 Vigna mungo HOM05D004635 ORTHO05D005899 2.1e-38 164.9 164 53.0
Cre01.g031750 Chlamydomonas reinhardtii HOM05D004635 ORTHO05D005899 1.8e-37 161.8 528 29.0
PRCOL_00006831 Prasinoderma coloniale HOM05D004635 ORTHO05D005899 5.1e-37 160.2 532 27.4
BcaC08g44517 Brassica carinata HOM05D004635 ORTHO05D005899 3.6e-30 137.5 242 42.1
QL12p018319 Quercus lobata HOM05D004635 ORTHO05D005899 3.7e-27 127.5 407 31.4
Solyc12g015770.3 Solanum lycopersicum HOM05D000074 ORTHO05D001262 1.5e-20 105.5 60 80.0
Lj2C188G13 Lonicera japonica HOM05D004635 ORTHO05D005899 1.1e-18 99.4 86 61.6
EL10Ac8g19215 Beta vulgaris HOM05D000238 ORTHO05D001043 9.1e-18 96.3 82 57.3
EL10Ac5g10794 Beta vulgaris HOM05D004635 ORTHO05D005899 8.8e-13 79.7 116 50.9
Lj2C188G12 Lonicera japonica HOM05D004635 ORTHO05D005899 2.2e-11 75.1 173 32.4
SGA_v2.0_scaffold48G17990 Striga asiatica HOM05D004635 ORTHO05D405620 1.5e-07 62.4 77 55.8
AL4G15290 Arabidopsis lyrata HOM05D004635 ORTHO05D079484 2.5e-07 61.6 80 48.8


User provided reference genes

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