Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.13266 Avicennia marina HOM05D005639 ORTHO05D007234 3.5e-270 934.5 519 100.0
SGA_v2.0_scaffold106G30666 Striga asiatica HOM05D005639 ORTHO05D007234 2.6e-180 636.0 524 73.9
Migut.H01334 Erythranthe guttata HOM05D005639 ORTHO05D007234 4.2e-178 628.6 402 85.1
SalBow7G3138 Salvia bowleyana HOM05D005639 ORTHO05D007234 1.0e-176 624.0 566 68.7
Dinv03058 Davidia involucrata HOM05D005639 ORTHO05D007234 1.9e-175 619.8 528 70.8
DCAR_003859 Daucus carota HOM05D005639 ORTHO05D007234 1.8e-173 613.2 528 70.5
Dinv01990 Davidia involucrata HOM05D005639 ORTHO05D007234 6.4e-171 604.7 514 71.8
CSS0044875 Camellia sinensis var. sinensis HOM05D005639 ORTHO05D007234 8.4e-171 604.4 527 69.6
PGSC0003DMG402021193 Solanum tuberosum HOM05D005639 ORTHO05D007234 1.9e-170 603.2 523 69.6
Rhsim13G0120200 Rhododendron simsii HOM05D005639 ORTHO05D007234 4.6e-169 598.6 525 69.0
vmacro03396 Vaccinium macrocarpon HOM05D005639 ORTHO05D007234 7.9e-169 597.8 525 69.5
Solyc02g069770.3 Solanum lycopersicum HOM05D005639 ORTHO05D007234 6.7e-168 594.7 523 69.8
Sopen02g018930 Solanum pennellii HOM05D005639 ORTHO05D007234 8.7e-168 594.3 523 69.6
Lsat_1_v5_gn_4_3900 Lactuca sativa HOM05D005639 ORTHO05D007234 2.5e-167 592.8 518 66.6
Atru.chr10.888 Acer truncatum HOM05D005639 ORTHO05D007234 7.4e-167 591.3 526 68.3
TWI73G0023 Tripterygium wilfordii HOM05D005639 ORTHO05D007234 2.6e-164 582.8 527 68.1
Actinidia36001 Actinidia chinensis HOM05D005639 ORTHO05D007234 1.0e-163 580.9 525 67.2
Nitab4.5_0004077g0020 Nicotiana tabacum HOM05D005639 ORTHO05D007234 2.9e-163 579.3 523 66.7
HanXRQChr17g0569471 Helianthus annuus HOM05D005639 ORTHO05D007234 4.9e-163 578.6 517 65.2
Nitab4.5_0002719g0080 Nicotiana tabacum HOM05D005639 ORTHO05D007234 5.5e-162 575.1 523 66.7
Sed0017304 Sechium edule HOM05D005639 ORTHO05D007234 7.1e-162 574.7 518 64.3
Cpa.g.sc19.212 Carica papaya HOM05D005639 ORTHO05D007234 2.1e-161 573.2 528 66.3
Prupe.4G089600 Prunus persica HOM05D005639 ORTHO05D007234 2.7e-161 572.8 520 66.9
Cc09_g08220 Coffea canephora HOM05D005639 ORTHO05D007234 4.6e-161 572.0 538 66.0
Hma1.2p1_0333F.1_g128320 Hydrangea macrophylla HOM05D005639 ORTHO05D007234 7.9e-161 571.2 524 66.4
MD10G1254000 Malus domestica HOM05D005639 ORTHO05D007234 7.9e-161 571.2 519 67.2
Peaxi162Scf00670g00332 Petunia axillaris HOM05D005639 ORTHO05D007234 1.5e-159 567.0 521 67.4
TWI09G1293 Tripterygium wilfordii HOM05D005639 ORTHO05D007234 2.5e-159 566.2 525 66.3
Ciclev10014949m.g Citrus clementina HOM05D005639 ORTHO05D007234 3.3e-159 565.8 526 66.2
unitig_8.g4887 Utricularia gibba HOM05D005639 ORTHO05D007234 9.6e-159 564.3 525 67.0
ClCG08G001610 Citrullus lanatus HOM05D005639 ORTHO05D007234 3.7e-158 562.4 526 65.8
ECA234G3170 Erigeron canadensis HOM05D005639 ORTHO05D007234 4.8e-158 562.0 518 64.1
CsaV3_5G039540 Cucumis sativus L. HOM05D005639 ORTHO05D007234 1.8e-157 560.1 523 65.2
Oeu030450.1 Olea europaea HOM05D005639 ORTHO05D007234 2.0e-156 556.6 497 62.6
Nn5g27628 Nelumbo nucifera HOM05D005639 ORTHO05D007234 3.4e-156 555.8 525 64.4
GSVIVG01021618001 Vitis vinifera HOM05D005639 ORTHO05D007234 1.9e-154 550.1 528 64.8
Sed0027243 Sechium edule HOM05D005639 ORTHO05D007234 4.2e-154 548.9 524 63.2
Cfa016817 Carpinus fangiana HOM05D005639 ORTHO05D007234 7.2e-154 548.1 518 64.3
FvH4_3g09990 Fragaria vesca HOM05D005639 ORTHO05D007234 9.3e-154 547.7 500 67.2
CiPaw.04G138400 Carya illinoinensis HOM05D005639 ORTHO05D007234 3.9e-152 542.3 510 64.3
Hund22392 Selenicereus undatus HOM05D005639 ORTHO05D007234 5.1e-152 542.0 528 64.0
Haze_19855 Corylus avellana HOM05D005639 ORTHO05D007234 3.3e-151 539.3 539 62.7
FAN21G2832 Fragaria x ananassa HOM05D005639 ORTHO05D007234 1.8e-149 533.5 500 65.8
RcHm_v2.0_Chr5g0015871 Rosa chinensis HOM05D005639 ORTHO05D007234 1.8e-149 533.5 443 70.9
FAN25G3670 Fragaria x ananassa HOM05D005639 ORTHO05D007234 5.3e-149 531.9 500 66.6
THA.LOC104806253 Tarenaya hassleriana HOM05D005639 ORTHO05D007234 9.0e-149 531.2 440 68.0
Aqoxy1G01607 Aquilegia oxysepala HOM05D005639 ORTHO05D007234 2.6e-148 529.6 401 71.6
Lalb_Chr18g0057911 Lupinus albus HOM05D005639 ORTHO05D007234 3.4e-148 529.3 514 63.4
MD05G1274300 Malus domestica HOM05D005639 ORTHO05D007234 5.9e-148 528.5 516 63.2
Sc24g0001380 Simmondsia chinensis HOM05D005639 ORTHO05D007234 1.3e-147 527.3 531 63.7
Thecc.06G000900 Theobroma cacao HOM05D005639 ORTHO05D007234 2.2e-147 526.6 525 61.7
Eucgr.D00190 Eucalyptus grandis HOM05D005639 ORTHO05D007234 8.5e-147 524.6 542 61.3
PGR083G2688 Punica granatum HOM05D005639 ORTHO05D007234 1.4e-146 523.9 496 63.9
VMungo0540G0794 Vigna mungo HOM05D005639 ORTHO05D007234 1.9e-146 523.5 501 63.9
Gohir.A02G094000 Gossypium hirsutum HOM05D005639 ORTHO05D007234 2.7e-145 519.6 524 60.7
COL.COLO4_26825 Corchorus olitorius HOM05D005639 ORTHO05D007234 4.6e-145 518.8 525 61.3
QL03p009300 Quercus lobata HOM05D005639 ORTHO05D007234 4.6e-145 518.8 599 52.9
THA.LOC104812393 Tarenaya hassleriana HOM05D005639 ORTHO05D007234 7.9e-145 518.1 530 60.6
Potri.005G061000 Populus trichocarpa HOM05D005639 ORTHO05D007234 1.8e-144 516.9 439 66.1
Gorai.005G118400 Gossypium raimondii HOM05D005639 ORTHO05D007234 5.1e-144 515.4 525 61.0
HPP92_013994 Vanilla planifolia HOM05D005639 ORTHO05D007234 8.8e-144 514.6 512 62.5
Phvul.006G129100 Phaseolus vulgaris HOM05D005639 ORTHO05D007234 1.1e-143 514.2 506 63.4
Ah.14g085710 Amaranthus hybridus HOM05D005639 ORTHO05D007234 1.5e-143 513.8 522 59.0
arahy.Tifrunner.gnm1.ann1.JS3IU7 Arachis hypogaea HOM05D005639 ORTHO05D007234 1.5e-143 513.8 512 62.7
MELO3C022131.2 Cucumis melo HOM05D005639 ORTHO05D007234 3.3e-143 512.7 501 63.1
FAN16G1271 Fragaria x ananassa HOM05D005639 ORTHO05D007234 3.3e-143 512.7 514 58.6
Gohir.D02G104300 Gossypium hirsutum HOM05D005639 ORTHO05D007234 4.3e-143 512.3 523 60.0
Potri.007G107900 Populus trichocarpa HOM05D005639 ORTHO05D007234 1.3e-142 510.8 443 66.1
Sabra05G0051400 Salix brachista HOM05D005639 ORTHO05D007234 1.3e-142 510.8 438 63.9
Lj6g0009484 Lotus japonicus HOM05D005639 ORTHO05D007234 3.7e-142 509.2 507 62.7
Manes.13G081200 Manihot esculenta HOM05D005639 ORTHO05D007234 6.9e-141 505.0 525 61.3
FAN11G3706 Fragaria x ananassa HOM05D005639 ORTHO05D007234 2.0e-140 503.4 507 59.4
TAR626G0701 Trochodendron aralioides HOM05D005639 ORTHO05D007234 1.0e-139 501.1 379 73.1
Sabra07G0088400 Salix brachista HOM05D005639 ORTHO05D007234 5.0e-139 498.8 438 66.2
CiPaw.02G032400 Carya illinoinensis HOM05D005639 ORTHO05D007234 7.2e-138 495.0 522 55.2
PSO675G8746 Papaver somniferum HOM05D005639 ORTHO05D007234 7.2e-138 495.0 521 59.5
arahy.Tifrunner.gnm1.ann1.MSHM5J Arachis hypogaea HOM05D005639 ORTHO05D007234 1.2e-137 494.2 552 58.2
PSO541G1457 Papaver somniferum HOM05D005639 ORTHO05D007234 3.6e-137 492.7 522 59.0
Glyma.09G023100 Glycine max HOM05D005639 ORTHO05D007234 6.1e-137 491.9 494 62.1
Psat1g168120 Pisum sativum HOM05D005639 ORTHO05D007234 1.8e-136 490.3 508 60.4
AT4G21130 Arabidopsis thaliana HOM05D005639 ORTHO05D007234 8.8e-136 488.0 516 53.7
Ca_00807_v3 Cicer arietinum L. HOM05D005639 ORTHO05D007234 6.3e-134 481.9 398 67.6
Thhalv10028589m.g Eutrema salsugineum HOM05D005639 ORTHO05D007234 7.0e-133 478.4 476 60.7
Zm00001eb218720 Zea mays HOM05D005639 ORTHO05D007234 7.0e-133 478.4 477 61.0
CARHR252170 Cardamine hirsuta HOM05D005639 ORTHO05D007234 1.2e-132 477.6 522 58.8
ATR0165G031 Amborella trichopoda HOM05D005639 ORTHO05D007234 1.6e-132 477.2 526 58.9
Aa31LG9G9170 Aethionema arabicum HOM05D005639 ORTHO05D007234 1.0e-131 474.6 453 66.0
Medtr2g029940 Medicago truncatula HOM05D005639 ORTHO05D007234 1.7e-131 473.8 511 59.1
AUR62033065 Chenopodium quinoa HOM05D005639 ORTHO05D007234 7.2e-130 468.4 408 62.0
Zm00001eb050650 Zea mays HOM05D005639 ORTHO05D007234 7.2e-130 468.4 393 66.7
Sp6g03680 Schrenkiella parvula HOM05D005639 ORTHO05D007234 2.0e-127 460.3 527 57.1
Carub.0006s3332 Capsella rubella HOM05D005639 ORTHO05D007234 5.7e-127 458.8 477 55.8
Os03g0625900 Oryza sativa ssp. japonica HOM05D005639 ORTHO05D007234 4.8e-126 455.7 402 63.7
BcaB01g02559 Brassica carinata HOM05D005639 ORTHO05D007234 1.1e-125 454.5 496 60.7
AT4G05410 Arabidopsis thaliana HOM05D005639 ORTHO05D007234 2.4e-125 453.4 475 60.2
AL7G32990 Arabidopsis lyrata HOM05D005639 ORTHO05D007234 5.3e-125 452.2 519 52.4
AL6G49000 Arabidopsis lyrata HOM05D005639 ORTHO05D007234 7.0e-125 451.8 475 58.7
EL10Ac4g08968 Beta vulgaris HOM05D005639 ORTHO05D007234 3.5e-124 449.5 498 60.6
CiPaw.10G033400 Carya illinoinensis HOM05D005639 ORTHO05D007234 4.5e-124 449.1 542 50.2
C09p32350 Brassica napus HOM05D005639 ORTHO05D007234 7.7e-124 448.4 509 57.4
CDE05G0927 Ceratophyllum demersum HOM05D005639 ORTHO05D007234 2.9e-123 446.4 514 54.7
A03p30310 Brassica napus HOM05D005639 ORTHO05D007234 3.8e-123 446.0 497 59.0
BraA09t38117Z Brassica rapa HOM05D005639 ORTHO05D007234 1.9e-122 443.7 501 56.9
BolC9t56080H Brassica oleracea HOM05D005639 ORTHO05D007234 2.5e-122 443.4 502 56.2
C03p36580 Brassica napus HOM05D005639 ORTHO05D007234 9.4e-122 441.4 497 58.4
vmacro03440 Vaccinium macrocarpon HOM05D005639 ORTHO05D007234 5.2e-120 435.6 509 54.8
A09p25350 Brassica napus HOM05D005639 ORTHO05D007234 5.7e-119 432.2 505 55.4
BraA03t12214Z Brassica rapa HOM05D005639 ORTHO05D007234 3.7e-118 429.5 506 56.9
BolC3t15973H Brassica oleracea HOM05D005639 ORTHO05D007234 4.8e-118 429.1 505 56.4
BcaC01g06663 Brassica carinata HOM05D005639 ORTHO05D007234 6.3e-118 428.7 502 56.6
AUR62042204 Chenopodium quinoa HOM05D005639 ORTHO05D007234 4.5e-116 422.5 407 58.7
Mapoly0012s0170 Marchantia polymorpha HOM05D005639 ORTHO05D007234 8.8e-112 408.3 535 50.8
AagrBONN_evm.TU.Sc2ySwM_228.3905 Anthoceros agrestis HOM05D005639 ORTHO05D007234 1.4e-109 401.0 426 57.5
HanXRQChr13g0407861 Helianthus annuus HOM05D005639 ORTHO05D007234 8.9e-104 381.7 353 65.2
Pp3c13_22280 Physcomitrium patens HOM05D005639 ORTHO05D007234 4.7e-97 359.4 532 48.5
Pp3c15_1000 Physcomitrium patens HOM05D005639 ORTHO05D007234 6.2e-97 359.0 540 48.0
SMO146G0033 Selaginella moellendorffii HOM05D005639 ORTHO05D007234 3.5e-84 316.6 429 49.4
CBR_g50978 Chara braunii HOM05D005639 ORTHO05D007234 8.6e-83 312.0 553 43.9
Glyma.15G129100 Glycine max HOM05D005639 ORTHO05D007234 5.2e-80 302.8 260 58.5
Actinidia13477 Actinidia chinensis HOM05D005639 ORTHO05D007234 4.3e-74 283.1 286 59.1
Actinidia13478 Actinidia chinensis HOM05D005639 ORTHO05D007234 9.6e-74 282.0 185 72.4
MCO15G200 Micromonas commoda HOM05D005639 ORTHO05D007234 1.5e-63 248.1 517 34.4
PRCOL_00004480 Prasinoderma coloniale HOM05D005639 ORTHO05D007234 4.9e-62 243.0 471 38.9
Duzib235G0447 Durio zibethinus HOM05D005639 ORTHO05D007234 2.8e-49 200.7 223 49.8
C06p38580 Brassica napus HOM05D005639 ORTHO05D007234 1.4e-48 198.4 278 42.4
Cre06.g278175 Chlamydomonas reinhardtii HOM05D005639 ORTHO05D007234 1.7e-46 191.4 495 31.3
BolC6t38950H Brassica oleracea HOM05D005639 ORTHO05D007234 5.7e-42 176.4 260 41.5
BcaB01g02186 Brassica carinata HOM05D005639 ORTHO05D007234 1.5e-23 115.2 130 48.5
Cfa027057 Carpinus fangiana HOM05D005639 ORTHO05D007234 7.7e-23 112.8 599 25.2
BcaC04g22046 Brassica carinata HOM05D001874 ORTHO05D002166 8.8e-19 99.4 81 60.5
BcaB07g31331 Brassica carinata HOM05D005639 ORTHO05D007234 1.5e-18 98.6 81 60.5
A08p03340 Brassica napus HOM05D005639 ORTHO05D001462 4.8e-17 93.6 107 49.5
Oeu020857.1 Olea europaea HOM05D005639 ORTHO05D290761 5.3e-16 90.1 152 50.7
A01p33050 Brassica napus HOM05D001874 ORTHO05D002166 2.2e-14 84.7 167 35.9
C08p21980 Brassica napus HOM05D005639 ORTHO05D002166 1.1e-13 82.4 166 36.7
BcaB03g11915 Brassica carinata HOM05D005639 ORTHO05D007234 1.4e-11 75.5 130 36.9
Nitab4.5_0002059g0020 Nicotiana tabacum HOM05D000453 ORTHO05D000387 5.9e-07 60.1 118 33.1
Sed0000658 Sechium edule HOM05D000645 ORTHO05D000494 1.0e-06 59.3 299 24.7
Lsat_1_v5_gn_6_115620 Lactuca sativa HOM05D002332 ORTHO05D002509 1.3e-06 58.9 111 28.8
Cpa.g.sc77.59 Carica papaya HOM05D002332 ORTHO05D002509 2.2e-06 58.2 83 37.3
Rhsim12G0161600 Rhododendron simsii HOM05D000453 ORTHO05D000387 2.9e-06 57.8 117 34.2
SalBow3G0209 Salvia bowleyana HOM05D000645 ORTHO05D000494 3.8e-06 57.4 230 23.9
COL.COLO4_29887 Corchorus olitorius HOM05D001610 ORTHO05D001585 6.5e-06 56.6 114 26.3
ATR0021G051 Amborella trichopoda HOM05D002332 ORTHO05D002509 8.5e-06 56.2 111 30.6
SGA_v2.0_scaffold62G21510 Striga asiatica HOM05D002332 ORTHO05D002509 8.5e-06 56.2 117 33.3


User provided reference genes

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