Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.10542 Avicennia marina HOM05D006688 ORTHO05D008550 1.0e-215 753.1 369 100.0
Migut.L01521 Erythranthe guttata HOM05D006688 ORTHO05D008550 2.5e-185 652.1 370 84.9
SGA_v2.0_scaffold23G10037 Striga asiatica HOM05D006688 ORTHO05D008550 8.6e-178 627.1 402 77.1
SalBow1G2294 Salvia bowleyana HOM05D006688 ORTHO05D008550 1.1e-177 626.7 401 77.8
unitig_578.g16412 Utricularia gibba HOM05D006688 ORTHO05D008550 1.6e-160 569.7 364 73.4
Oeu000312.2 Olea europaea HOM05D006688 ORTHO05D008550 2.8e-160 568.9 414 68.1
Cc06_g11640 Coffea canephora HOM05D006688 ORTHO05D008550 1.6e-155 553.1 374 71.1
CSS0016517 Camellia sinensis var. sinensis HOM05D006688 ORTHO05D008550 4.6e-155 551.6 371 71.4
Lj7C679G14 Lonicera japonica HOM05D006688 ORTHO05D008550 3.9e-154 548.5 369 72.1
Dinv42341 Davidia involucrata HOM05D006688 ORTHO05D008550 1.5e-153 546.6 367 72.8
Sopen07g019540 Solanum pennellii HOM05D006688 ORTHO05D008550 1.1e-151 540.4 366 69.7
Nitab4.5_0001519g0100 Nicotiana tabacum HOM05D006688 ORTHO05D008550 6.9e-151 537.7 368 70.1
TAR636G2732 Trochodendron aralioides HOM05D006688 ORTHO05D008550 5.8e-150 534.6 375 69.6
CiPaw.03G212300 Carya illinoinensis HOM05D006688 ORTHO05D008550 7.9e-147 524.2 369 67.5
GSVIVG01015172001 Vitis vinifera HOM05D006688 ORTHO05D008550 2.3e-146 522.7 371 68.7
Thecc.09G085200 Theobroma cacao HOM05D006688 ORTHO05D008550 1.5e-145 520.0 365 69.0
Haze_25940 Corylus avellana HOM05D006688 ORTHO05D008550 1.9e-145 519.6 368 67.7
vmacro06303 Vaccinium macrocarpon HOM05D006688 ORTHO05D008550 3.3e-145 518.8 365 70.4
Peaxi162Scf00494g00088 Petunia axillaris HOM05D006688 ORTHO05D008550 9.6e-145 517.3 364 66.5
Rhsim03G0231200 Rhododendron simsii HOM05D006688 ORTHO05D008550 1.6e-144 516.5 365 69.6
QL02p062093 Quercus lobata HOM05D006688 ORTHO05D008550 3.7e-144 515.4 392 64.3
Hma1.2p1_0672F.1_g201000 Hydrangea macrophylla HOM05D006688 ORTHO05D008550 4.8e-144 515.0 370 68.6
Atru.chr7.1629 Acer truncatum HOM05D006688 ORTHO05D008550 6.2e-144 514.6 372 65.9
Nitab4.5_0003606g0020 Nicotiana tabacum HOM05D006688 ORTHO05D008550 8.1e-144 514.2 357 69.5
Gohir.D06G072500 Gossypium hirsutum HOM05D006688 ORTHO05D008550 4.0e-143 511.9 366 67.8
Gorai.010G084500 Gossypium raimondii HOM05D006688 ORTHO05D008550 4.0e-143 511.9 366 67.8
Gohir.A06G073600 Gossypium hirsutum HOM05D006688 ORTHO05D008550 7.6e-142 507.7 366 67.8
RcHm_v2.0_Chr2g0093801 Rosa chinensis HOM05D006688 ORTHO05D008550 7.6e-142 507.7 369 66.4
FvH4_1g07921 Fragaria vesca HOM05D006688 ORTHO05D008550 2.9e-141 505.8 370 65.7
COL.COLO4_18173 Corchorus olitorius HOM05D006688 ORTHO05D008550 8.4e-141 504.2 366 66.9
PGR004G0903 Punica granatum HOM05D006688 ORTHO05D008550 3.2e-140 502.3 367 66.2
MD02G1082800 Malus domestica HOM05D006688 ORTHO05D008550 3.5e-139 498.8 371 65.5
FAN26G0248 Fragaria x ananassa HOM05D006688 ORTHO05D008550 6.0e-139 498.0 370 64.9
FAN19G1103 Fragaria x ananassa HOM05D006688 ORTHO05D008550 7.9e-139 497.7 366 65.8
MELO3C015492.2 Cucumis melo HOM05D006688 ORTHO05D008550 1.0e-138 497.3 368 64.1
Aqoxy7G01159 Aquilegia oxysepala HOM05D006688 ORTHO05D008550 1.8e-138 496.5 373 64.6
Sc08g0008600 Simmondsia chinensis HOM05D006688 ORTHO05D008550 3.9e-138 495.4 368 65.8
PSO063G5109 Papaver somniferum HOM05D006688 ORTHO05D008550 5.1e-138 495.0 372 64.2
PSO782G0729 Papaver somniferum HOM05D006688 ORTHO05D008550 1.1e-137 493.8 372 63.2
FAN28G0979 Fragaria x ananassa HOM05D006688 ORTHO05D008550 1.5e-137 493.4 370 64.1
CsaV3_1G040620 Cucumis sativus L. HOM05D006688 ORTHO05D008550 5.6e-137 491.5 368 63.9
arahy.Tifrunner.gnm1.ann1.UP5FVB Arachis hypogaea HOM05D006688 ORTHO05D008550 1.6e-136 490.0 370 63.8
ECA232G4161 Erigeron canadensis HOM05D006688 ORTHO05D008550 1.6e-136 490.0 368 63.3
DCAR_010507 Daucus carota HOM05D006688 ORTHO05D008550 3.7e-136 488.8 370 63.2
Glyma.13G106300 Glycine max HOM05D006688 ORTHO05D008550 1.1e-135 487.3 371 63.6
arahy.Tifrunner.gnm1.ann1.XSA7KG Arachis hypogaea HOM05D006688 ORTHO05D008550 1.4e-135 486.9 374 63.6
EL10Ac8g19177 Beta vulgaris HOM05D006688 ORTHO05D008550 1.8e-135 486.5 374 64.7
Lj4g0022709 Lotus japonicus HOM05D006688 ORTHO05D008550 2.4e-135 486.1 367 64.6
Manes.03G036200 Manihot esculenta HOM05D006688 ORTHO05D008550 5.3e-135 485.0 368 64.7
Glyma.17G053100 Glycine max HOM05D006688 ORTHO05D008550 1.5e-134 483.4 372 62.9
Potri.007G001500 Populus trichocarpa HOM05D006688 ORTHO05D008550 5.8e-134 481.5 366 62.6
Sed0022183 Sechium edule HOM05D006688 ORTHO05D008550 2.9e-133 479.2 366 62.6
arahy.Tifrunner.gnm1.ann1.LNAK8N Arachis hypogaea HOM05D006688 ORTHO05D008550 3.8e-133 478.8 362 64.6
Phvul.003G134700 Phaseolus vulgaris HOM05D006688 ORTHO05D008550 2.5e-132 476.1 371 63.1
VMungo1215G1360 Vigna mungo HOM05D006688 ORTHO05D008550 4.2e-132 475.3 371 63.1
Hund06662 Selenicereus undatus HOM05D006688 ORTHO05D008550 7.1e-132 474.6 370 63.5
Ah.09g228060 Amaranthus hybridus HOM05D006688 ORTHO05D008550 2.7e-131 472.6 378 63.5
TPR.G9451 Trifolium pratense HOM05D006688 ORTHO05D008550 1.3e-130 470.3 379 61.5
Medtr4g125950 Medicago truncatula HOM05D006688 ORTHO05D008550 1.8e-130 469.9 378 61.1
Cfa003056 Carpinus fangiana HOM05D006688 ORTHO05D000625 2.3e-130 469.5 342 65.8
AUR62029033 Chenopodium quinoa HOM05D006688 ORTHO05D008550 1.9e-129 466.5 373 62.7
Duzib150G1545 Durio zibethinus HOM05D006688 ORTHO05D000625 9.7e-129 464.2 340 66.5
BcaC06g36575 Brassica carinata HOM05D006688 ORTHO05D008550 6.3e-128 461.5 369 61.0
C07p02720 Brassica napus HOM05D006688 ORTHO05D008550 1.8e-127 459.9 369 60.7
BolC7t40672H Brassica oleracea HOM05D006688 ORTHO05D008550 1.8e-127 459.9 369 60.7
Sabra07G0001100 Salix brachista HOM05D006688 ORTHO05D008550 3.1e-127 459.1 407 57.0
Thhalv10022744m.g Eutrema salsugineum HOM05D006688 ORTHO05D008550 4.1e-127 458.8 370 61.1
Eucgr.C03417 Eucalyptus grandis HOM05D006688 ORTHO05D008550 9.0e-127 457.6 365 63.8
Lalb_Chr20g0118781 Lupinus albus HOM05D006688 ORTHO05D008550 1.5e-126 456.8 366 61.2
MBI04_g35655_MAGBIO Magnolia biondii HOM05D006688 ORTHO05D008550 2.0e-126 456.4 376 62.2
BraA07t27924Z Brassica rapa HOM05D006688 ORTHO05D008550 2.6e-126 456.1 363 60.3
ClCG03G015420 Citrullus lanatus HOM05D006688 ORTHO05D008550 2.6e-126 456.1 349 62.5
CARHR109870 Cardamine hirsuta HOM05D006688 ORTHO05D008550 5.9e-126 454.9 368 60.6
AT2G19430 Arabidopsis thaliana HOM05D006688 ORTHO05D008550 7.7e-126 454.5 370 60.0
Carub.0003s3371 Capsella rubella HOM05D006688 ORTHO05D008550 7.7e-126 454.5 365 60.3
AL3G48850 Arabidopsis lyrata HOM05D006688 ORTHO05D008550 1.7e-125 453.4 370 60.0
A07p01330 Brassica napus HOM05D006688 ORTHO05D008550 1.9e-124 449.9 363 60.3
Prupe.7G205900 Prunus persica HOM05D006688 ORTHO05D008550 1.9e-124 449.9 291 70.8
BcaB03g16729 Brassica carinata HOM05D006688 ORTHO05D008550 4.6e-123 445.3 368 59.5
Lsat_1_v5_gn_5_143161 Lactuca sativa HOM05D006688 ORTHO05D008550 1.5e-121 440.3 372 58.1
FAN26G2887 Fragaria x ananassa HOM05D006688 ORTHO05D008550 7.4e-121 438.0 291 69.8
Ca_21292_v3 Cicer arietinum L. HOM05D006688 ORTHO05D008550 2.8e-120 436.0 372 57.8
Aa31LG8G16440 Aethionema arabicum HOM05D006688 ORTHO05D008550 4.8e-120 435.3 365 58.9
TWI32G0460 Tripterygium wilfordii HOM05D006688 ORTHO05D008550 8.2e-120 434.5 379 59.4
MBI04_g12191_MAGBIO Magnolia biondii HOM05D006688 ORTHO05D008550 1.2e-118 430.6 351 63.0
Sp3g32810 Schrenkiella parvula HOM05D006688 ORTHO05D008550 3.8e-117 425.6 370 57.6
Nn8g38791 Nelumbo nucifera HOM05D006688 ORTHO05D008550 1.4e-114 417.2 382 55.5
FAN23G3127 Fragaria x ananassa HOM05D006688 ORTHO05D008550 1.1e-111 407.5 370 56.8
Actinidia38457 Actinidia chinensis HOM05D006688 ORTHO05D008550 4.1e-111 405.6 363 59.8
THA.LOC104814631 Tarenaya hassleriana HOM05D006688 ORTHO05D008550 7.0e-111 404.8 367 56.7
AUR62033933 Chenopodium quinoa HOM05D006688 ORTHO05D008550 7.7e-110 401.4 394 54.1
HanXRQChr10g0319491 Helianthus annuus HOM05D006688 ORTHO05D008550 2.2e-109 399.8 372 55.9
CDE04G2495 Ceratophyllum demersum HOM05D006688 ORTHO05D008550 8.0e-107 391.3 346 57.2
MD15G1210900 Malus domestica HOM05D006688 ORTHO05D008550 2.2e-104 383.3 387 52.7
HPP92_007651 Vanilla planifolia HOM05D006688 ORTHO05D008550 7.0e-103 378.3 292 62.7
Zm00001eb310980 Zea mays HOM05D006688 ORTHO05D008550 1.0e-101 374.4 369 49.6
ATR0789G107 Amborella trichopoda HOM05D006688 ORTHO05D008550 2.2e-101 373.2 353 56.1
Psat7g043880 Pisum sativum HOM05D006688 ORTHO05D008550 1.1e-100 370.9 311 59.5
Mapoly0100s0025 Marchantia polymorpha HOM05D006688 ORTHO05D008550 1.6e-83 313.9 376 46.8
Ciclev10009613m.g Citrus clementina HOM05D006688 ORTHO05D008550 7.3e-76 288.5 188 71.3
CANSAT56G4018 Cannabis sativa HOM05D006688 ORTHO05D008550 5.2e-66 255.8 215 59.5
Lj7A540G53 Lonicera japonica HOM05D006688 ORTHO05D008550 2.8e-59 233.4 174 66.1
Os09g0363600 Oryza sativa ssp. japonica HOM05D006688 ORTHO05D008550 1.4e-58 231.1 269 48.0
MCO14G146 Micromonas commoda HOM05D006688 ORTHO05D008550 9.3e-47 191.8 369 33.1
Cpa.g.sc28.145 Carica papaya HOM05D006688 ORTHO05D008550 1.9e-44 184.1 127 67.7
Cpa.g.sc28.142 Carica papaya HOM05D006688 ORTHO05D008550 6.6e-37 159.1 153 53.6
Ciclev10009794m.g Citrus clementina HOM05D006688 ORTHO05D008550 9.6e-36 155.2 149 56.4
Solyc07g040780.4 Solanum lycopersicum HOM05D006688 ORTHO05D008550 3.6e-35 153.3 142 55.6
SEGI_08677 Sequoiadendron giganteum HOM05D006688 ORTHO05D008550 2.4e-26 124.0 130 51.5
Cre03.g180200 Chlamydomonas reinhardtii HOM05D006688 ORTHO05D008550 1.3e-24 118.2 430 27.0
arahy.Tifrunner.gnm1.ann1.B17F7K Arachis hypogaea HOM05D006688 ORTHO05D008550 2.3e-21 107.5 68 66.2
Duzib168G0254 Durio zibethinus HOM05D006688 ORTHO05D008550 2.3e-21 107.5 65 76.9
arahy.Tifrunner.gnm1.ann1.LK4K8I Arachis hypogaea HOM05D006688 ORTHO05D008550 3.0e-21 107.1 69 65.2
Thhalv10023917m.g Eutrema salsugineum HOM05D006688 ORTHO05D008550 7.4e-20 102.4 142 41.5
SEGI_12408 Sequoiadendron giganteum HOM05D006688 ORTHO05D008550 1.2e-17 95.1 96 50.0
COL.COLO4_27080 Corchorus olitorius HOM05D006688 ORTHO05D008550 3.1e-10 70.5 68 55.9
VMungo0720G2087 Vigna mungo HOM05D000836 ORTHO05D000709 4.5e-09 66.6 217 24.4
CBR_g13009 Chara braunii HOM05D006688 ORTHO05D008550 5.9e-09 66.2 51 56.9
Ciclev10004358m.g Citrus clementina HOM05D000836 ORTHO05D000709 1.4e-07 61.6 210 22.4
BcaB07g31609 Brassica carinata HOM05D006688 ORTHO05D008550 2.5e-07 60.8 114 38.6
Zm00001eb160220 Zea mays HOM05D003769 ORTHO05D004521 3.2e-07 60.5 222 21.6
DCAR_000644 Daucus carota HOM05D003913 ORTHO05D004803 4.2e-07 60.1 183 25.1
FAN10G1082 Fragaria x ananassa HOM05D001335 ORTHO05D001184 5.5e-07 59.7 169 25.4
Nitab4.5_0002890g0010 Nicotiana tabacum HOM05D003913 ORTHO05D004803 9.4e-07 58.9 176 26.7
SHI00252 Sapria himalayana HOM05D003769 ORTHO05D014021 9.4e-07 58.9 100 30.0
Psat6g188560 Pisum sativum HOM05D000168 ORTHO05D004803 1.2e-06 58.5 227 25.6
Psat6g019720 Pisum sativum HOM05D003913 ORTHO05D004803 1.6e-06 58.2 232 25.4
BolC3t12720H Brassica oleracea HOM05D023048 ORTHO05D024144 2.1e-06 57.8 49 51.0
C09p59210 Brassica napus HOM05D023048 ORTHO05D024144 2.7e-06 57.4 44 52.3
Os01g0575500 Oryza sativa ssp. japonica HOM05D003769 ORTHO05D004521 2.7e-06 57.4 222 21.6
BcaC05g24809 Brassica carinata HOM05D023048 ORTHO05D024144 6.1e-06 56.2 44 52.3
C05p08270 Brassica napus HOM05D023048 ORTHO05D024144 6.1e-06 56.2 44 52.3
Pp3c26_9700 Physcomitrium patens HOM05D003769 ORTHO05D004521 6.1e-06 56.2 149 26.2
RcHm_v2.0_Chr1g0376561 Rosa chinensis HOM05D001335 ORTHO05D001184 7.9e-06 55.8 113 30.1


User provided reference genes

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