Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C033568.2 Cucumis melo HOM05D000964 ORTHO05D004047 2.3e-72 275.4 132 100.0
MELO3C000951.2 Cucumis melo HOM05D000964 ORTHO05D004047 6.9e-61 237.3 131 87.0
MELO3C027953.2 Cucumis melo HOM05D000964 ORTHO05D004047 6.9e-61 237.3 131 87.0
RcHm_v2.0_CPg0501901 Rosa chinensis HOM05D000964 ORTHO05D004047 1.0e-56 223.4 131 79.4
ClCG11G017180 Citrullus lanatus HOM05D000964 ORTHO05D004047 1.1e-55 219.9 131 80.9
arahy.Tifrunner.gnm1.ann1.918II3 Arachis hypogaea HOM05D000964 ORTHO05D004047 5.6e-55 217.6 130 78.5
PGR111G0002 Punica granatum HOM05D000964 ORTHO05D004047 1.3e-54 216.5 131 78.6
PGSC0003DMG400002472 Solanum tuberosum HOM05D000964 ORTHO05D004047 2.8e-54 215.3 131 77.9
PGSC0003DMG400014075 Solanum tuberosum HOM05D000964 ORTHO05D004047 3.7e-54 214.9 131 77.9
CAN.G1595.4 Capsicum annuum HOM05D000964 ORTHO05D004047 6.2e-54 214.2 131 77.9
Medtr4g051380 Medicago truncatula HOM05D000964 ORTHO05D004047 8.1e-54 213.8 131 77.1
arahy.Tifrunner.gnm1.ann1.YUC9G4 Arachis hypogaea HOM05D000964 ORTHO05D004047 3.1e-53 211.8 131 76.3
Lalb_Chr25g0283351 Lupinus albus HOM05D000964 ORTHO05D004047 3.1e-53 211.8 131 78.6
Peaxi162Scf00705g00612 Petunia axillaris HOM05D000964 ORTHO05D004047 4.0e-53 211.5 132 78.0
Oeu012810.1 Olea europaea HOM05D000964 ORTHO05D004047 1.5e-52 209.5 129 76.0
Hma1.2p1_0818F.1_g223330 Hydrangea macrophylla HOM05D000964 ORTHO05D004047 5.8e-52 207.6 131 74.8
Oeu058362.1 Olea europaea HOM05D000964 ORTHO05D004047 7.6e-52 207.2 129 76.7
CAN.G327.18 Capsicum annuum HOM05D000964 ORTHO05D004047 9.9e-52 206.8 131 76.3
ATCG00740 Arabidopsis thaliana HOM05D000964 ORTHO05D004047 1.7e-51 206.1 131 72.5
Cpa.g.c42072 Carica papaya HOM05D000964 ORTHO05D004047 1.7e-51 206.1 131 75.6
Gohir.1Z050334 Gossypium hirsutum HOM05D000964 ORTHO05D004047 1.7e-51 206.1 131 74.8
Gohir.A12G025100 Gossypium hirsutum HOM05D000964 ORTHO05D004047 1.7e-51 206.1 131 74.8
CAN.G1478.7 Capsicum annuum HOM05D000964 ORTHO05D004047 2.2e-51 205.7 131 75.6
Nn002s41359 Nelumbo nucifera HOM05D000964 ORTHO05D004047 2.2e-51 205.7 131 74.8
Nn070s42369 Nelumbo nucifera HOM05D000964 ORTHO05D004047 2.2e-51 205.7 131 74.8
BraA06t25382Z Brassica rapa HOM05D000964 ORTHO05D004047 2.9e-51 205.3 131 72.5
BraSC143t45635Z Brassica rapa HOM05D000964 ORTHO05D004047 2.9e-51 205.3 131 72.5
LjContig00318g0022290 Lotus japonicus HOM05D000964 ORTHO05D004047 3.8e-51 204.9 131 74.8
LjContig00319g0012184 Lotus japonicus HOM05D000964 ORTHO05D004047 3.8e-51 204.9 131 74.8
LjContig00319g0026138 Lotus japonicus HOM05D000964 ORTHO05D004047 3.8e-51 204.9 131 74.8
PSO548G0113 Papaver somniferum HOM05D000964 ORTHO05D004047 3.8e-51 204.9 131 74.8
BolSC29t60485H Brassica oleracea HOM05D000964 ORTHO05D004047 6.4e-51 204.1 131 71.8
BolSC29t60607H Brassica oleracea HOM05D000964 ORTHO05D004047 6.4e-51 204.1 131 71.8
BolSC46t61018H Brassica oleracea HOM05D000964 ORTHO05D004047 6.4e-51 204.1 131 71.8
BolSC49t61165H Brassica oleracea HOM05D000964 ORTHO05D004047 6.4e-51 204.1 131 71.8
Nn5g30296 Nelumbo nucifera HOM05D000964 ORTHO05D004047 6.4e-51 204.1 131 74.0
AL2G20580 Arabidopsis lyrata HOM05D000964 ORTHO05D004047 8.4e-51 203.8 131 72.5
AL2G21700 Arabidopsis lyrata HOM05D000964 ORTHO05D004047 8.4e-51 203.8 131 72.5
Gohir.D01G102099 Gossypium hirsutum HOM05D000964 ORTHO05D004047 1.1e-50 203.4 131 74.0
Nn049s41916 Nelumbo nucifera HOM05D000964 ORTHO05D004047 1.1e-50 203.4 131 74.0
DCAR_032517 Daucus carota HOM05D000964 ORTHO05D004047 1.9e-50 202.6 132 74.2
Lj2C1239T2 Lonicera japonica HOM05D000964 ORTHO05D004047 1.9e-50 202.6 131 74.0
Lj2P1237T122 Lonicera japonica HOM05D000964 ORTHO05D004047 1.9e-50 202.6 131 74.0
Lju5009P0T55 Lonicera japonica HOM05D000964 ORTHO05D004047 1.9e-50 202.6 131 74.0
PSO478G2461 Papaver somniferum HOM05D000964 ORTHO05D004047 1.9e-50 202.6 131 73.3
Migut.D01434 Erythranthe guttata HOM05D000964 ORTHO05D004047 2.4e-50 202.2 131 74.8
MSTRG.11748 Avicennia marina HOM05D000964 ORTHO05D004047 7.1e-50 200.7 131 74.0
Gorai.010G120000 Gossypium raimondii HOM05D000964 ORTHO05D004047 1.2e-49 199.9 131 71.8
Gohir.A09G245632 Gossypium hirsutum HOM05D000964 ORTHO05D004047 2.7e-49 198.7 131 72.5
CARHR282230 Cardamine hirsuta HOM05D000964 ORTHO05D004047 3.5e-49 198.4 131 70.2
Psat4g041120 Pisum sativum HOM05D000964 ORTHO05D004047 3.5e-49 198.4 131 69.5
EL10Ac4g07915 Beta vulgaris HOM05D000890 ORTHO05D000697 4.6e-49 198.0 131 73.3
arahy.Tifrunner.gnm1.ann1.93R6SD Arachis hypogaea HOM05D000964 ORTHO05D004047 6.0e-49 197.6 131 74.0
PGSC0003DMG400003335 Solanum tuberosum HOM05D000964 ORTHO05D004047 6.0e-49 197.6 131 71.8
Gohir.A05G326924 Gossypium hirsutum HOM05D000964 ORTHO05D004047 3.9e-48 194.9 131 71.8
Hund29571 Selenicereus undatus HOM05D000964 ORTHO05D004047 1.1e-47 193.4 125 74.4
Medtr0002s0760 Medicago truncatula HOM05D000964 ORTHO05D004047 1.9e-47 192.6 131 70.2
Nitab4.5_0001564g0040 Nicotiana tabacum HOM05D000964 ORTHO05D004047 1.9e-47 192.6 131 71.0
Gorai.004G205100 Gossypium raimondii HOM05D000964 ORTHO05D004047 5.6e-47 191.0 131 67.9
HanXRQChr00c0394g0574561 Helianthus annuus HOM05D000964 ORTHO05D004047 5.6e-47 191.0 131 71.0
HanXRQChr00c0593g0576341 Helianthus annuus HOM05D000964 ORTHO05D004047 5.6e-47 191.0 131 71.0
HanXRQChr01g0020241 Helianthus annuus HOM05D000964 ORTHO05D004047 5.6e-47 191.0 131 71.0
HanXRQChr04g0127511 Helianthus annuus HOM05D000964 ORTHO05D004047 5.6e-47 191.0 131 71.0
HanXRQChr10g0284361 Helianthus annuus HOM05D000964 ORTHO05D004047 5.6e-47 191.0 131 71.0
HanXRQChr10g0318081 Helianthus annuus HOM05D000964 ORTHO05D004047 5.6e-47 191.0 131 71.0
HanXRQChr11g0326941 Helianthus annuus HOM05D000964 ORTHO05D004047 5.6e-47 191.0 131 71.0
HanXRQChr12g0369841 Helianthus annuus HOM05D000964 ORTHO05D004047 5.6e-47 191.0 131 71.0
HanXRQCPg0580161 Helianthus annuus HOM05D000964 ORTHO05D004047 5.6e-47 191.0 131 71.0
Lalb_Chr03g0039311 Lupinus albus HOM05D000964 ORTHO05D004047 5.6e-47 191.0 119 77.3
Lsat_1_v5_gn_0_41600 Lactuca sativa HOM05D000964 ORTHO05D004047 6.2e-46 187.6 131 69.5
Lsat_1_v5_gn_6_69061 Lactuca sativa HOM05D000964 ORTHO05D004047 6.2e-46 187.6 131 69.5
Lsat_1_v5_gn_7_96560 Lactuca sativa HOM05D000964 ORTHO05D004047 6.2e-46 187.6 131 69.5
HanXRQChr11g0345261 Helianthus annuus HOM05D000964 ORTHO05D004047 1.1e-45 186.8 131 70.2
Nitab4.5_0004376g0120 Nicotiana tabacum HOM05D000964 ORTHO05D004047 1.1e-45 186.8 131 69.5
Gohir.D08G194628 Gossypium hirsutum HOM05D000964 ORTHO05D004047 3.1e-45 185.3 127 67.7
Hund30094 Selenicereus undatus HOM05D000964 ORTHO05D004047 1.5e-44 183.0 119 73.9
Solyc00g500157.1 Solanum lycopersicum HOM05D000964 ORTHO05D004047 1.0e-43 180.3 131 68.7
Solyc09g050062.1 Solanum lycopersicum HOM05D000964 ORTHO05D004047 1.0e-43 180.3 131 68.7
Lsat_1_v5_gn_5_50401 Lactuca sativa HOM05D000964 ORTHO05D004047 1.3e-43 179.9 131 66.4
C02p60150 Brassica napus HOM05D000964 ORTHO05D004047 3.8e-43 178.3 131 64.9
Gorai.013G106800 Gossypium raimondii HOM05D000964 ORTHO05D004047 1.9e-42 176.0 131 66.4
Hund08596 Selenicereus undatus HOM05D000964 ORTHO05D004047 7.1e-42 174.1 131 67.9
HanXRQChr00c0392g0574491 Helianthus annuus HOM05D000964 ORTHO05D004047 3.5e-41 171.8 120 70.0
HPP92_028393 Vanilla planifolia HOM05D000964 ORTHO05D004047 3.0e-40 168.7 131 61.8
HPP92_028402 Vanilla planifolia HOM05D000964 ORTHO05D004047 3.0e-40 168.7 131 61.8
HPP92_028410 Vanilla planifolia HOM05D000964 ORTHO05D004047 3.0e-40 168.7 131 61.8
Gohir.D02G179050 Gossypium hirsutum HOM05D000964 ORTHO05D004047 1.1e-39 166.8 108 73.1
BNapus_Darmor_BZH_scaffold_253p00330 Brassica napus HOM05D000964 ORTHO05D004047 1.9e-39 166.0 108 70.4
Sed0010415 Sechium edule HOM05D000964 ORTHO05D003870 3.3e-39 165.2 96 82.3
Sed0021757 Sechium edule HOM05D000964 ORTHO05D003870 3.3e-39 165.2 96 82.3
Sed0026352 Sechium edule HOM05D000964 ORTHO05D004047 3.3e-39 165.2 96 82.3
Sed0000903 Sechium edule HOM05D000964 ORTHO05D004047 7.4e-39 164.1 128 68.0
TWI75G0222 Tripterygium wilfordii HOM05D000964 ORTHO05D004047 2.4e-37 159.1 104 71.2
Peaxi162Scf00527g00039 Petunia axillaris HOM05D000964 ORTHO05D004047 3.1e-37 158.7 123 65.0
Psat5g068400 Pisum sativum HOM05D000964 ORTHO05D004047 4.1e-37 158.3 104 69.2
EL10Ac5g11667 Beta vulgaris HOM05D000964 ORTHO05D004047 5.3e-37 157.9 107 69.2
Hma1.2p1_0818F.1_g223310 Hydrangea macrophylla HOM05D000631 ORTHO05D004047 5.3e-37 157.9 103 71.8
Oeu012812.1 Olea europaea HOM05D000964 ORTHO05D004047 3.4e-36 155.2 103 68.9
HanXRQChr10g0303891 Helianthus annuus HOM05D000964 ORTHO05D004047 2.2e-35 152.5 115 66.1
SEGI_22757 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 5.0e-35 151.4 133 56.4
Lsat_1_v5_gn_2_92080 Lactuca sativa HOM05D000964 ORTHO05D004047 8.5e-35 150.6 103 69.9
HanXRQChr05g0152581 Helianthus annuus HOM05D000964 ORTHO05D004047 1.4e-34 149.8 101 70.3
SEGI_04931 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 2.5e-34 149.1 133 55.6
SEGI_17120 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 2.5e-34 149.1 133 55.6
SEGI_21589 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 2.5e-34 149.1 133 55.6
SEGI_31867 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 2.5e-34 149.1 133 55.6
SEGI_32358 Sequoiadendron giganteum HOM05D000216 ORTHO05D001131 2.5e-34 149.1 133 55.6
SEGI_36889 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 2.5e-34 149.1 133 55.6
Nitab4.5_0020737g0020 Nicotiana tabacum HOM05D000964 ORTHO05D004047 7.2e-34 147.5 89 76.4
Oeu064090.1 Olea europaea HOM05D000964 ORTHO05D004047 9.3e-34 147.1 113 63.7
Gohir.D03G062001 Gossypium hirsutum HOM05D000964 ORTHO05D004047 1.6e-33 146.4 129 59.7
Psat7g045240 Pisum sativum HOM05D000964 ORTHO05D004047 1.6e-33 146.4 97 70.1
HanXRQChr15g0486541 Helianthus annuus HOM05D000964 ORTHO05D004047 2.1e-33 146.0 131 57.3
SEGI_33647 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 6.1e-33 144.4 133 54.1
SEGI_02369 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 1.8e-32 142.9 133 54.1
Hund08803 Selenicereus undatus HOM05D000964 ORTHO05D004047 3.0e-32 142.1 98 67.3
Hund29611 Selenicereus undatus HOM05D000964 ORTHO05D004047 3.0e-32 142.1 98 67.3
Hund30271 Selenicereus undatus HOM05D000964 ORTHO05D004047 3.9e-32 141.7 93 71.0
Hund31408 Selenicereus undatus HOM05D000964 ORTHO05D004047 3.9e-32 141.7 93 71.0
BraSC58t46439Z Brassica rapa HOM05D000964 ORTHO05D004047 4.3e-31 138.3 94 66.0
EL10As12g24034 Beta vulgaris HOM05D000964 ORTHO05D004047 5.7e-31 137.9 93 69.9
Hund07962 Selenicereus undatus HOM05D000964 ORTHO05D004047 6.3e-30 134.4 107 62.6
Duzib165G0005 Durio zibethinus HOM05D000964 ORTHO05D004047 6.9e-29 131.0 105 61.9
CSS0021839 Camellia sinensis var. sinensis HOM05D000964 ORTHO05D004047 1.5e-28 129.8 118 57.6
EL10As15g24109 Beta vulgaris HOM05D000964 ORTHO05D004047 2.6e-28 129.0 126 54.0
Gohir.A01G137773 Gossypium hirsutum HOM05D000964 ORTHO05D004047 4.5e-28 128.3 127 52.8
Solyc01g017440.1 Solanum lycopersicum HOM05D000964 ORTHO05D004047 5.9e-28 127.9 128 51.6
CsaV3_3G019080 Cucumis sativus L. HOM05D000964 ORTHO05D004047 1.3e-27 126.7 74 82.4
Atru.chr12.312 Acer truncatum HOM05D000964 ORTHO05D004047 1.1e-26 123.6 86 69.8
Gohir.A08G063300 Gossypium hirsutum HOM05D000964 ORTHO05D004047 2.7e-25 119.0 79 72.2
HanXRQChr11g0321081 Helianthus annuus HOM05D000964 ORTHO05D004047 6.1e-25 117.9 84 65.5
Pp3c5_15590 Physcomitrium patens HOM05D000964 ORTHO05D004047 1.0e-24 117.1 132 45.5
Gorai.007G252200 Gossypium raimondii HOM05D000964 ORTHO05D004047 2.3e-24 115.9 131 48.1
TPR.G38392 Trifolium pratense HOM05D000964 ORTHO05D004047 5.1e-24 114.8 83 69.9
BraSC58t46500Z Brassica rapa HOM05D000964 ORTHO05D004047 5.7e-23 111.3 75 68.0
EL10Ac4g08559 Beta vulgaris HOM05D000964 ORTHO05D004047 7.4e-23 110.9 131 50.4
Zm00001eb255890 Zea mays HOM05D000964 ORTHO05D004047 2.8e-22 109.0 65 78.5
Zm00001eb434880 Zea mays HOM05D000964 ORTHO05D004047 2.8e-22 109.0 65 78.5
Zm00001eb435090 Zea mays HOM05D000964 ORTHO05D004047 2.8e-22 109.0 65 78.5
Zm00001eb435140 Zea mays HOM05D000964 ORTHO05D004047 2.8e-22 109.0 65 78.5
Zm00001eb435360 Zea mays HOM05D000964 ORTHO05D004047 2.8e-22 109.0 65 78.5
SMO086G0025 Selaginella moellendorffii HOM05D000964 ORTHO05D004047 1.4e-21 106.7 135 44.4
Psat5g206600 Pisum sativum HOM05D000964 ORTHO05D004047 4.1e-21 105.1 60 80.0
HanXRQChr02g0052621 Helianthus annuus HOM05D000964 ORTHO05D003870 6.9e-21 104.4 68 73.5
HanXRQChr03g0068101 Helianthus annuus HOM05D000964 ORTHO05D004047 2.9e-19 99.0 64 75.0
Nitab4.5_0000014g0500 Nicotiana tabacum HOM05D000964 ORTHO05D004047 2.9e-19 99.0 68 67.6
Atru.chr12.2306 Acer truncatum HOM05D000964 ORTHO05D004047 5.0e-19 98.2 71 67.6
arahy.Tifrunner.gnm1.ann1.P04IPH Arachis hypogaea HOM05D000580 ORTHO05D001362 6.5e-19 97.8 54 79.6
Lalb_Chr20g0115411 Lupinus albus HOM05D000964 ORTHO05D004047 6.5e-19 97.8 71 64.8
arahy.Tifrunner.gnm1.ann1.Z4WADK Arachis hypogaea HOM05D000964 ORTHO05D004047 8.5e-19 97.4 59 76.3
BNapus_Darmor_BZH_scaffold_287p00260 Brassica napus HOM05D000964 ORTHO05D004047 1.1e-18 97.1 62 71.0
Gorai.005G117200 Gossypium raimondii HOM05D000964 ORTHO05D004047 1.4e-18 96.7 69 65.2
Gohir.A12G228525 Gossypium hirsutum HOM05D000964 ORTHO05D004047 3.2e-18 95.5 108 48.1
Psat6g111000 Pisum sativum HOM05D000964 ORTHO05D004047 5.5e-18 94.7 56 76.8
Pp3c11_16940 Physcomitrium patens HOM05D000964 ORTHO05D004047 1.2e-17 93.6 131 35.1
Gohir.D02G103150 Gossypium hirsutum HOM05D000964 ORTHO05D004047 2.1e-17 92.8 77 58.4
Solyc12g035890.3 Solanum lycopersicum HOM05D000964 ORTHO05D004047 6.1e-17 91.3 91 50.5
RcHm_v2.0_Chr5g0083591 Rosa chinensis HOM05D000964 ORTHO05D004047 3.0e-16 89.0 51 86.3
HanXRQChr08g0207991 Helianthus annuus HOM05D000964 ORTHO05D003870 5.2e-16 88.2 49 85.7
Gohir.D08G145550 Gossypium hirsutum HOM05D000964 ORTHO05D003870 2.0e-15 86.3 108 43.5
Gorai.004G150700 Gossypium raimondii HOM05D000964 ORTHO05D003870 1.7e-14 83.2 60 63.3
BolSC35t60667H Brassica oleracea HOM05D000964 ORTHO05D004047 2.8e-14 82.4 49 75.5
Medtr1g070860 Medicago truncatula HOM05D000964 ORTHO05D004047 6.3e-14 81.3 86 48.8
CAN.G413.1 Capsicum annuum HOM05D000964 ORTHO05D003870 1.2e-12 77.0 43 86.0
BraSC59t46573Z Brassica rapa HOM05D000964 ORTHO05D004047 2.2e-11 72.8 48 66.7
Manes.09G008550 Manihot esculenta HOM05D000964 ORTHO05D004047 2.2e-11 72.8 45 75.6
Lsat_1_v5_gn_8_146180 Lactuca sativa HOM05D000964 ORTHO05D003870 9.4e-10 67.4 37 83.8
Medtr4g059920 Medicago truncatula HOM05D000964 ORTHO05D004047 1.6e-09 66.6 59 55.9
SEGI_27150 Sequoiadendron giganteum HOM05D001133 ORTHO05D000941 2.1e-09 66.2 47 66.0
Mapoly0026s0099 Marchantia polymorpha HOM05D000964 ORTHO05D004047 9.7e-07 57.4 93 36.6
MELO3C031060.2 Cucumis melo HOM05D000964 ORTHO05D004047 8.2e-06 54.3 32 75.0


User provided reference genes

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