Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C028469.2 Cucumis melo HOM05D005583 ORTHO05D044829 5.0e-44 180.6 87 100.0
MELO3C009939.2 Cucumis melo HOM05D005583 ORTHO05D006507 2.8e-10 68.6 32 90.6
ClCG10G014410 Citrullus lanatus HOM05D005583 ORTHO05D006507 6.2e-10 67.4 32 87.5
CsaV3_3G042180 Cucumis sativus L. HOM05D005583 ORTHO05D006507 1.1e-09 66.6 32 87.5
Nn4g22860 Nelumbo nucifera HOM05D005583 ORTHO05D006507 1.8e-09 65.9 32 84.4
MELO3C029988.2 Cucumis melo HOM05D007013 ORTHO05D029173 2.4e-09 65.5 30 93.3
EL10Ac1g00599 Beta vulgaris HOM05D005583 ORTHO05D006507 4.0e-09 64.7 32 84.4
Sed0016811 Sechium edule HOM05D005583 ORTHO05D006507 4.0e-09 64.7 32 84.4
Sc06g0001630 Simmondsia chinensis HOM05D005583 ORTHO05D006507 4.0e-09 64.7 50 62.0
Actinidia36072 Actinidia chinensis HOM05D005583 ORTHO05D006507 5.3e-09 64.3 50 62.0
arahy.Tifrunner.gnm1.ann1.8IP107 Arachis hypogaea HOM05D005583 ORTHO05D006507 5.3e-09 64.3 50 62.0
arahy.Tifrunner.gnm1.ann1.YT8U7M Arachis hypogaea HOM05D005583 ORTHO05D006507 5.3e-09 64.3 50 62.0
Lj1g0019005 Lotus japonicus HOM05D005583 ORTHO05D006507 5.3e-09 64.3 50 62.0
MSTRG.3182 Avicennia marina HOM05D005583 ORTHO05D006507 6.9e-09 63.9 50 62.0
Lalb_Chr10g0093441 Lupinus albus HOM05D005583 ORTHO05D006507 6.9e-09 63.9 50 62.0
PGSC0003DMG400006911 Solanum tuberosum HOM05D005583 ORTHO05D006507 9.0e-09 63.5 71 43.7
Dinv35039 Davidia involucrata HOM05D005583 ORTHO05D006507 1.2e-08 63.2 32 81.2
Hma1.2p1_0697F.1_g204850 Hydrangea macrophylla HOM05D005583 ORTHO05D006507 1.2e-08 63.2 32 81.2
Hma1.2p1_0697F.1_g204860 Hydrangea macrophylla HOM05D005583 ORTHO05D006507 1.2e-08 63.2 32 81.2
Potri.017G070500 Populus trichocarpa HOM05D005583 ORTHO05D006507 1.2e-08 63.2 50 62.0
Solyc02g067670.4 Solanum lycopersicum HOM05D005583 ORTHO05D006507 1.2e-08 63.2 55 54.5
Sopen02g016780 Solanum pennellii HOM05D005583 ORTHO05D006507 1.2e-08 63.2 55 54.5
Lj7A589G58 Lonicera japonica HOM05D005583 ORTHO05D006507 1.5e-08 62.8 42 69.0
Medtr7g034405 Medicago truncatula HOM05D005583 ORTHO05D006507 1.5e-08 62.8 50 58.0
RcHm_v2.0_Chr2g0170851 Rosa chinensis HOM05D005583 ORTHO05D006507 1.5e-08 62.8 32 78.1
Zm00001eb007570 Zea mays HOM05D005583 ORTHO05D006507 1.5e-08 62.8 50 60.0
Aqoxy3G03052 Aquilegia oxysepala HOM05D005583 ORTHO05D006507 2.0e-08 62.4 32 75.0
Nitab4.5_0001727g0030 Nicotiana tabacum HOM05D005583 ORTHO05D006507 2.0e-08 62.4 37 67.6
Peaxi162Scf00368g00115 Petunia axillaris HOM05D005583 ORTHO05D006507 2.0e-08 62.4 37 67.6
Rhsim10G0025300 Rhododendron simsii HOM05D005583 ORTHO05D006507 2.0e-08 62.4 60 55.0
Hund12473 Selenicereus undatus HOM05D005583 ORTHO05D006507 2.0e-08 62.4 32 78.1
CiPaw.04G023600 Carya illinoinensis HOM05D005583 ORTHO05D006507 2.6e-08 62.0 32 78.1
Migut.H00145 Erythranthe guttata HOM05D005583 ORTHO05D006507 2.6e-08 62.0 32 81.2
PGR142G3038 Punica granatum HOM05D005583 ORTHO05D006507 2.6e-08 62.0 32 78.1
Eucgr.I01829 Eucalyptus grandis HOM05D005583 ORTHO05D006507 3.4e-08 61.6 71 46.5
MBI15_g24176_MAGBIO Magnolia biondii HOM05D005583 ORTHO05D006507 3.4e-08 61.6 32 75.0
Manes.15G181100 Manihot esculenta HOM05D005583 ORTHO05D006507 3.4e-08 61.6 32 81.2
Os03g0205400 Oryza sativa ssp. japonica HOM05D005583 ORTHO05D006507 3.4e-08 61.6 50 56.0
CAN.G983.2 Capsicum annuum HOM05D005583 ORTHO05D006507 4.4e-08 61.2 55 52.7
MELO3C033311.2 Cucumis melo HOM05D005583 ORTHO05D044829 4.4e-08 61.2 28 89.3
PSO063G3250 Papaver somniferum HOM05D005583 ORTHO05D006507 4.4e-08 61.2 32 75.0
PSO832G0708 Papaver somniferum HOM05D005583 ORTHO05D006507 4.4e-08 61.2 32 75.0
TWI56G1339 Tripterygium wilfordii HOM05D005583 ORTHO05D006507 4.4e-08 61.2 50 56.0
Cfa007452 Carpinus fangiana HOM05D005583 ORTHO05D006507 5.8e-08 60.8 32 75.0
Ca_14482_v3 Cicer arietinum L. HOM05D005583 ORTHO05D006507 5.8e-08 60.8 50 58.0
Haze_14649 Corylus avellana HOM05D005583 ORTHO05D006507 5.8e-08 60.8 32 75.0
Sabra17G0050500 Salix brachista HOM05D005583 ORTHO05D006507 5.8e-08 60.8 50 60.0
Cc07_g02460 Coffea canephora HOM05D005583 ORTHO05D006507 7.6e-08 60.5 32 78.1
Psat3g171760 Pisum sativum HOM05D005583 ORTHO05D006507 7.6e-08 60.5 50 56.0
AUR62035940 Chenopodium quinoa HOM05D005583 ORTHO05D006507 9.9e-08 60.1 31 80.6
GSVIVG01032508001 Vitis vinifera HOM05D005583 ORTHO05D006507 9.9e-08 60.1 32 81.2
CDE10G1103 Ceratophyllum demersum HOM05D005583 ORTHO05D006507 1.3e-07 59.7 50 56.0
TPR.G30816 Trifolium pratense HOM05D005583 ORTHO05D006507 1.3e-07 59.7 50 56.0
TAR629G0978 Trochodendron aralioides HOM05D005583 ORTHO05D006507 1.3e-07 59.7 32 78.1
Glyma.01G077200 Glycine max HOM05D005583 ORTHO05D006507 1.7e-07 59.3 32 75.0
Nitab4.5_0001709g0090 Nicotiana tabacum HOM05D005583 ORTHO05D006507 1.7e-07 59.3 37 64.9
SGA_v2.0_scaffold135G34849 Striga asiatica HOM05D005583 ORTHO05D006507 1.7e-07 59.3 32 78.1
VMungo1383G3393 Vigna mungo HOM05D005583 ORTHO05D006507 1.7e-07 59.3 50 58.0
FvH4_6g50430 Fragaria vesca HOM05D005583 ORTHO05D006507 2.2e-07 58.9 32 75.0
FAN09G0355 Fragaria x ananassa HOM05D005583 ORTHO05D006507 2.2e-07 58.9 32 75.0
ATR0629G036 Amborella trichopoda HOM05D005583 ORTHO05D006507 3.8e-07 58.2 35 71.4
CSS0006408 Camellia sinensis var. sinensis HOM05D005583 ORTHO05D006507 3.8e-07 58.2 32 75.0
CSS0039879 Camellia sinensis var. sinensis HOM05D005583 ORTHO05D006507 3.8e-07 58.2 32 75.0
SalBow1G3935 Salvia bowleyana HOM05D005583 ORTHO05D006507 3.8e-07 58.2 32 81.2
HanXRQChr14g0450181 Helianthus annuus HOM05D005583 ORTHO05D006507 4.9e-07 57.8 32 75.0
THA.LOC104825294 Tarenaya hassleriana HOM05D005583 ORTHO05D006507 4.9e-07 57.8 55 50.9
CANSAT64G0115 Cannabis sativa HOM05D005583 ORTHO05D006507 6.4e-07 57.4 32 71.9
Thhalv10003517m.g Eutrema salsugineum HOM05D005583 ORTHO05D006507 6.4e-07 57.4 55 50.9
BcaC06g30938 Brassica carinata HOM05D005583 ORTHO05D006507 8.4e-07 57.0 50 56.0
Carub.0005s0655 Capsella rubella HOM05D005583 ORTHO05D006507 8.4e-07 57.0 55 50.9
Prupe.3G281300 Prunus persica HOM05D005583 ORTHO05D006507 8.4e-07 57.0 32 71.9
Sp2g17030 Schrenkiella parvula HOM05D005583 ORTHO05D006507 8.4e-07 57.0 50 54.0
SEGI_39705 Sequoiadendron giganteum HOM05D005583 ORTHO05D006507 8.4e-07 57.0 50 54.0
BcaC06g33760 Brassica carinata HOM05D005583 ORTHO05D006507 1.1e-06 56.6 50 54.0
A06p40700 Brassica napus HOM05D005583 ORTHO05D006507 1.1e-06 56.6 50 54.0
C07p37240 Brassica napus HOM05D005583 ORTHO05D006507 1.1e-06 56.6 50 54.0
C07p37280 Brassica napus HOM05D005583 ORTHO05D006507 1.1e-06 56.6 50 54.0
BolC7t44234H Brassica oleracea HOM05D005583 ORTHO05D006507 1.1e-06 56.6 50 54.0
FAN14G4719 Fragaria x ananassa HOM05D005583 ORTHO05D006507 1.1e-06 56.6 32 71.9
Lsat_1_v5_gn_2_92580 Lactuca sativa HOM05D005583 ORTHO05D006507 1.1e-06 56.6 32 75.0
QL02p077165 Quercus lobata HOM05D005583 ORTHO05D006507 1.1e-06 56.6 32 68.8
Aa31LG2G4780 Aethionema arabicum HOM05D005583 ORTHO05D006507 1.4e-06 56.2 50 52.0
BraA06t26991Z Brassica rapa HOM05D005583 ORTHO05D006507 1.4e-06 56.2 50 54.0
AT3G28030 Arabidopsis thaliana HOM05D005583 ORTHO05D006507 1.9e-06 55.8 51 52.9
Cpa.g.sc140.34 Carica papaya HOM05D005583 ORTHO05D006507 1.9e-06 55.8 50 54.0
COL.COLO4_04368 Corchorus olitorius HOM05D005583 ORTHO05D006507 2.4e-06 55.5 32 68.8
Duzib147G0322 Durio zibethinus HOM05D005583 ORTHO05D006507 2.4e-06 55.5 32 68.8
Gohir.A07G218700 Gossypium hirsutum HOM05D005583 ORTHO05D006507 2.4e-06 55.5 50 52.0
Gohir.D07G225712 Gossypium hirsutum HOM05D005583 ORTHO05D006507 2.4e-06 55.5 50 52.0
AL5G17540 Arabidopsis lyrata HOM05D005583 ORTHO05D006507 3.2e-06 55.1 55 49.1
ECA238G4583 Erigeron canadensis HOM05D005583 ORTHO05D006507 3.2e-06 55.1 32 75.0
unitig_21.g20499 Utricularia gibba HOM05D005583 ORTHO05D006507 3.2e-06 55.1 31 77.4
MELO3C019305.2 Cucumis melo HOM05D000142 ORTHO05D000124 4.2e-06 54.7 36 80.6
CsaV3_2G034630 Cucumis sativus L. HOM05D000142 ORTHO05D000124 4.2e-06 54.7 36 80.6
ClCG02G010060 Citrullus lanatus HOM05D000142 ORTHO05D000124 5.4e-06 54.3 36 77.8


User provided reference genes

Program Settings