Gene: COL.COLO4_04368
General Information
Structural Information
- Species Corchorus olitorius
- Gene Identifier COL.COLO4_04368
- Transcript Identifier COL.rna3199
- Gene Type Coding gene
- Location AWUE01011409.1 : 18246-29591 : negative
Gene Family Information
- ID HOM05D005583
- #Genes/#Species 138/100
- Phylogenetic origin
- ID ORTHO05D006507
- #Genes/#Species 142/100
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid rna3199
- GenBank OMP10663.1
- id gene4340
- gene_name COLO4_04368
- uniprot A0A1R3KU86
Descriptions
- Description Drug/metabolite transporter
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006289 | IEA | GOA Database | nucleotide-excision repair | |
| GO:0006289 | IEA | InterPro | nucleotide-excision repair | |
| GO:0010213 | ISO | PLAZA Integrative Orthology | non-photoreactive DNA repair | AT3G28030 |
| GO:0010224 | ISO | PLAZA Integrative Orthology | response to UV-B | AT3G28030 |
| GO:0009408 | ISO | PLAZA Integrative Orthology | response to heat | AT3G28030 |
| GO:0090305 | IEA | GOA Database | nucleic acid phosphodiester bond hydrolysis | |
| GO:0006974 | IEA | GOA Database | cellular response to DNA damage stimulus | |
| GO:0006281 | IEA | GOA Database | DNA repair |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT3G28030 |
| GO:0004518 | IEA | GOA Database | nuclease activity | |
| GO:0004518 | IEA | InterPro | nuclease activity | |
| GO:0004519 | IEA | GOA Database | endonuclease activity | |
| GO:0004519 | IEA | InterPro | endonuclease activity | |
| GO:0003697 | IEA | GOA Database | single-stranded DNA binding | |
| GO:0003697 | IEA | InterPro | single-stranded DNA binding | |
| GO:0003824 | IEA | GOA Database | catalytic activity | |
| GO:0003824 | IEA | InterPro | catalytic activity | |
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0016788 | IEA | GOA Database | hydrolase activity, acting on ester bonds | |
| GO:0016787 | IEA | GOA Database | hydrolase activity | |
| GO:0046872 | IEA | GOA Database | metal ion binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | IEA | InterPro | nucleus | |
| GO:0016021 | IEA | GOA Database | integral component of membrane | |
| GO:0016021 | IEA | InterPro | integral component of membrane | |
| GO:0016020 | IEA | GOA Database | membrane | |
| GO:0016020 | IEA | InterPro | membrane |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR000620 | EamA domain |
| IPR006084 | XPG/Rad2 endonuclease |
| IPR025527 | HUWE1/Rev1, ubiquitin binding region |
| IPR008918 | Helix-hairpin-helix motif, class 2 |
| IPR001044 | XPG/Rad2 endonuclease, eukaryotes |
| IPR006085 | XPG, N-terminal |
| IPR029060 | PIN-like domain superfamily |
| IPR036279 | 5'-3' exonuclease, C-terminal domain superfamily |
| IPR006086 | XPG-I domain |