Gene: Cc07_g02460
General Information
Structural Information
- Species Coffea canephora
- Gene Identifier Cc07_g02460
- Transcript Identifier Cc07_g02460.1
- Gene Type Coding gene
- Location chr7 : 1671137-1679843 : positive
Gene Family Information
- ID HOM05D005583
- #Genes/#Species 138/100
- Phylogenetic origin
- ID ORTHO05D006507
- #Genes/#Species 142/100
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- UniProtKB P28715
- UniProtKB P14629
- UniProtKB Q9ATY5
- UniProtKB F6HV16
- UniProtKB D7LPN6
- UniProtKB F2EKZ8
- id GSCOCG00039441001
Descriptions
- Description Putative DNA repair protein UVH3
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006289 | IEA | InterPro | nucleotide-excision repair | |
| GO:0009408 | ISO | PLAZA Integrative Orthology | response to heat | AT3G28030 |
| GO:0010224 | ISO | PLAZA Integrative Orthology | response to UV-B | AT3G28030 |
| GO:0010213 | ISO | PLAZA Integrative Orthology | non-photoreactive DNA repair | AT3G28030 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003697 | IEA | InterPro | single-stranded DNA binding | |
| GO:0004519 | IEA | InterPro | endonuclease activity | |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0003824 | IEA | InterPro | catalytic activity | |
| GO:0004518 | IEA | InterPro | nuclease activity | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT3G28030 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | InterPro | nucleus |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR001044 | XPG/Rad2 endonuclease, eukaryotes |
| IPR008918 | Helix-hairpin-helix motif, class 2 |
| IPR036279 | 5'-3' exonuclease, C-terminal domain superfamily |
| IPR006086 | XPG-I domain |
| IPR025527 | HUWE1/Rev1, ubiquitin binding region |
| IPR006084 | XPG/Rad2 endonuclease |
| IPR006085 | XPG, N-terminal |
| IPR029060 | PIN-like domain superfamily |
| Mapman id | Description |
|---|---|
| 14.6.5 | DNA damage response.nucleotide excision repair (NER).DNA repair endonuclease (XPG) |