Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C026965.2 Cucumis melo HOM05D005238 ORTHO05D006337 4.8e-108 395.6 418 100.0
CsaV3_4G031880 Cucumis sativus L. HOM05D005238 ORTHO05D006337 5.2e-70 269.2 430 85.3
ClCG11G016430 Citrullus lanatus HOM05D005238 ORTHO05D006337 1.2e-55 221.5 206 91.3
TAR627G0595 Trochodendron aralioides HOM05D005238 ORTHO05D006337 4.7e-47 193.0 173 64.2
Cfa002698 Carpinus fangiana HOM05D005238 ORTHO05D006337 2.6e-45 187.2 243 72.0
Dinv42511 Davidia involucrata HOM05D005238 ORTHO05D006337 1.1e-43 181.8 176 57.4
GSVIVG01020424001 Vitis vinifera HOM05D005238 ORTHO05D006337 1.1e-43 181.8 155 69.7
Potri.011G143100 Populus trichocarpa HOM05D005238 ORTHO05D006337 5.4e-43 179.5 156 63.5
CiPaw.12G006900 Carya illinoinensis HOM05D005238 ORTHO05D006337 9.2e-43 178.7 244 65.6
QL04p073782 Quercus lobata HOM05D005238 ORTHO05D006337 9.2e-43 178.7 156 62.8
Nn6g31521 Nelumbo nucifera HOM05D005238 ORTHO05D006337 4.6e-42 176.4 154 63.6
Manes.06G171800 Manihot esculenta HOM05D005238 ORTHO05D006337 6.0e-42 176.0 331 56.8
CANSAT80G2747 Cannabis sativa HOM05D005238 ORTHO05D006337 1.0e-41 175.3 157 65.6
arahy.Tifrunner.gnm1.ann1.7NR7Q4 Arachis hypogaea HOM05D005238 ORTHO05D006337 1.1e-40 171.8 229 71.2
Prupe.4G139800 Prunus persica HOM05D005238 ORTHO05D006337 1.9e-40 171.0 156 63.5
MBI16_g40051_MAGBIO Magnolia biondii HOM05D005238 ORTHO05D006337 4.3e-40 169.9 157 60.5
MD10G1202400 Malus domestica HOM05D005238 ORTHO05D006337 4.3e-40 169.9 160 63.8
Rhsim06G0238800 Rhododendron simsii HOM05D005238 ORTHO05D006337 4.3e-40 169.9 170 56.5
arahy.Tifrunner.gnm1.ann1.K2PXHZ Arachis hypogaea HOM05D005238 ORTHO05D006337 5.6e-40 169.5 229 70.3
Oeu003828.2 Olea europaea HOM05D005238 ORTHO05D006337 1.2e-39 168.3 250 54.0
Cpa.g.sc10.47 Carica papaya HOM05D005238 ORTHO05D006337 2.1e-39 167.5 332 67.5
Lalb_Chr20g0108761 Lupinus albus HOM05D005238 ORTHO05D006337 2.1e-39 167.5 331 68.9
vmacro11663 Vaccinium macrocarpon HOM05D005238 ORTHO05D006337 2.8e-39 167.2 157 58.6
Glyma.08G172000 Glycine max HOM05D005238 ORTHO05D006337 4.7e-39 166.4 165 58.8
Phvul.005G056900 Phaseolus vulgaris HOM05D005238 ORTHO05D006337 4.7e-39 166.4 144 63.2
Gohir.A13G153000 Gossypium hirsutum HOM05D005238 ORTHO05D006337 6.2e-39 166.0 175 53.1
Aa31LG7G1130 Aethionema arabicum HOM05D005238 ORTHO05D006337 1.4e-38 164.9 149 62.4
Glyma.15G255400 Glycine max HOM05D005238 ORTHO05D006337 1.8e-38 164.5 165 58.2
Eucgr.F03179 Eucalyptus grandis HOM05D005238 ORTHO05D006337 2.3e-38 164.1 159 62.3
TPR.G9757 Trifolium pratense HOM05D005238 ORTHO05D006337 4.0e-38 163.3 245 61.6
CSS0024118 Camellia sinensis var. sinensis HOM05D005238 ORTHO05D006337 8.9e-38 162.2 173 57.8
Gohir.D01G026800 Gossypium hirsutum HOM05D005238 ORTHO05D006337 8.9e-38 162.2 157 57.3
VMungo1080G1161 Vigna mungo HOM05D005238 ORTHO05D006337 8.9e-38 162.2 146 61.6
Dinv19619 Davidia involucrata HOM05D005238 ORTHO05D006337 1.2e-37 161.8 157 56.1
Lalb_Chr25g0284971 Lupinus albus HOM05D005238 ORTHO05D006337 1.2e-37 161.8 392 65.1
Oeu052006.1 Olea europaea HOM05D005238 ORTHO05D006337 1.5e-37 161.4 252 51.6
Duzib213G1032 Durio zibethinus HOM05D005238 ORTHO05D006337 2.6e-37 160.6 176 52.3
Haze_24974 Corylus avellana HOM05D005238 ORTHO05D006337 3.4e-37 160.2 146 62.3
TWI39G0564 Tripterygium wilfordii HOM05D005238 ORTHO05D006337 9.8e-37 158.7 176 58.5
BcaC07g38806 Brassica carinata HOM05D005238 ORTHO05D006337 1.3e-36 158.3 177 52.5
Manes.14G016200 Manihot esculenta HOM05D005238 ORTHO05D006337 1.3e-36 158.3 157 61.8
Psat1g011080 Pisum sativum HOM05D005238 ORTHO05D006337 1.3e-36 158.3 229 62.9
Ca_03677_v3 Cicer arietinum L. HOM05D005238 ORTHO05D006337 2.2e-36 157.5 127 66.1
Sabra11G0127900 Salix brachista HOM05D001622 ORTHO05D007320 4.9e-36 156.4 298 56.4
SGA_v2.0_scaffold186G40218 Striga asiatica HOM05D005238 ORTHO05D006337 5.4e-35 152.9 173 53.2
BolC5t30204H Brassica oleracea HOM05D005238 ORTHO05D006337 9.2e-35 152.1 152 57.2
Nitab4.5_0008429g0030 Nicotiana tabacum HOM05D005238 ORTHO05D006337 1.6e-34 151.4 148 53.4
PGR031G1019 Punica granatum HOM05D005238 ORTHO05D006337 1.6e-34 151.4 190 74.2
Cc05_g16060 Coffea canephora HOM05D005238 ORTHO05D006337 2.1e-34 151.0 245 58.8
BcaB03g13039 Brassica carinata HOM05D000001 ORTHO05D000003 2.7e-34 150.6 176 52.8
SalBow8G4928 Salvia bowleyana HOM05D005238 ORTHO05D006337 2.7e-34 150.6 249 49.8
Migut.M01557 Erythranthe guttata HOM05D005238 ORTHO05D006337 3.5e-34 150.2 158 53.2
Medtr2g069490 Medicago truncatula HOM05D005238 ORTHO05D006337 4.6e-34 149.8 229 62.9
THA.LOC104813616 Tarenaya hassleriana HOM05D005238 ORTHO05D006337 4.6e-34 149.8 157 58.0
MSTRG.7059 Avicennia marina HOM05D005238 ORTHO05D006337 6.0e-34 149.4 153 54.9
Duzib187G0607 Durio zibethinus HOM05D005238 ORTHO05D006337 6.0e-34 149.4 146 56.2
BcaC05g25524 Brassica carinata HOM05D005238 ORTHO05D006337 7.8e-34 149.1 151 56.3
BolC8t49374H Brassica oleracea HOM05D005238 ORTHO05D006337 7.8e-34 149.1 177 50.3
AL1G28770 Arabidopsis lyrata HOM05D005238 ORTHO05D006337 1.3e-33 148.3 159 54.7
Ciclev10020284m.g Citrus clementina HOM05D005238 ORTHO05D006337 1.3e-33 148.3 157 56.1
Gohir.D01G026750 Gossypium hirsutum HOM05D005238 ORTHO05D006337 1.3e-33 148.3 139 59.7
A08p31340 Brassica napus HOM05D000001 ORTHO05D000003 1.7e-33 147.9 158 53.8
Solyc10g005590.4 Solanum lycopersicum HOM05D005238 ORTHO05D006337 2.3e-33 147.5 159 56.0
Sopen10g001560 Solanum pennellii HOM05D005238 ORTHO05D006337 2.3e-33 147.5 159 56.0
PGSC0003DMG400011240 Solanum tuberosum HOM05D005238 ORTHO05D006337 5.0e-33 146.4 159 54.7
Lj8A188G51 Lonicera japonica HOM05D005238 ORTHO05D006337 6.6e-33 146.0 144 56.9
CARHR017080 Cardamine hirsuta HOM05D005238 ORTHO05D006337 8.6e-33 145.6 303 52.8
Gorai.002G036200 Gossypium raimondii HOM05D005238 ORTHO05D006337 8.6e-33 145.6 157 53.5
Hma1.2p1_0637F.1_g193540 Hydrangea macrophylla HOM05D005238 ORTHO05D006337 8.6e-33 145.6 331 60.7
Sed0003933 Sechium edule HOM05D005238 ORTHO05D006337 8.6e-33 145.6 331 67.7
C05p14890 Brassica napus HOM05D005238 ORTHO05D006337 1.1e-32 145.2 150 57.3
Hma1.2p1_0334F.1_g128770 Hydrangea macrophylla HOM05D005238 ORTHO05D006337 1.1e-32 145.2 177 52.5
SEGI_37868 Sequoiadendron giganteum HOM05D005238 ORTHO05D006337 1.1e-32 145.2 157 54.8
Sp1g14750 Schrenkiella parvula HOM05D005238 ORTHO05D006337 1.5e-32 144.8 156 52.6
C08p17490 Brassica napus HOM05D005238 ORTHO05D006337 2.5e-32 144.1 177 50.3
BraA08t35057Z Brassica rapa HOM05D000001 ORTHO05D000003 3.3e-32 143.7 139 56.8
Gohir.D13G157300 Gossypium hirsutum HOM05D005238 ORTHO05D006337 3.3e-32 143.7 175 51.4
PSO782G5275 Papaver somniferum HOM05D005238 ORTHO05D006337 3.3e-32 143.7 157 55.4
AT1G16610 Arabidopsis thaliana HOM05D005238 ORTHO05D006337 4.3e-32 143.3 142 56.3
ATR1136G058 Amborella trichopoda HOM05D005238 ORTHO05D006337 5.6e-32 142.9 143 58.0
Gorai.013G178100 Gossypium raimondii HOM05D005238 ORTHO05D006337 7.3e-32 142.5 174 51.1
HanXRQChr03g0071621 Helianthus annuus HOM05D005238 ORTHO05D006337 9.5e-32 142.1 161 54.7
SEGI_03141 Sequoiadendron giganteum HOM05D005238 ORTHO05D006337 9.5e-32 142.1 176 52.8
Lj3g0001441 Lotus japonicus HOM05D005238 ORTHO05D006337 1.2e-31 141.7 231 61.5
C08p44400 Brassica napus HOM05D005238 ORTHO05D006337 3.6e-31 140.2 127 60.6
FvH4_3g15770 Fragaria vesca HOM05D005238 ORTHO05D006337 6.2e-31 139.4 304 51.3
FAN11G0128 Fragaria x ananassa HOM05D006308 ORTHO05D007820 6.2e-31 139.4 304 51.3
TWI38G1616 Tripterygium wilfordii HOM05D005238 ORTHO05D006337 8.1e-31 139.0 331 64.4
FAN16G2086 Fragaria x ananassa HOM05D005238 ORTHO05D006337 3.1e-30 137.1 146 57.5
RcHm_v2.0_Chr5g0026571 Rosa chinensis HOM05D005238 ORTHO05D006337 3.1e-30 137.1 128 63.3
FAN25G0513 Fragaria x ananassa HOM05D006308 ORTHO05D007820 5.2e-30 136.3 153 57.5
Thecc.07G152800 Theobroma cacao HOM05D005238 ORTHO05D006337 5.2e-30 136.3 174 49.4
A06p12590 Brassica napus HOM05D005238 ORTHO05D006337 8.9e-30 135.6 158 53.8
BraA06t24421Z Brassica rapa HOM05D005238 ORTHO05D006337 1.2e-29 135.2 158 54.4
BraA09t41454Z Brassica rapa HOM05D005238 ORTHO05D006337 1.2e-29 135.2 334 57.8
FAN21G1113 Fragaria x ananassa HOM05D005238 ORTHO05D006337 1.5e-29 134.8 128 61.7
Gohir.A01G039100 Gossypium hirsutum HOM05D005238 ORTHO05D006337 1.5e-29 134.8 157 52.2
Atru.chr2.1794 Acer truncatum HOM05D005238 ORTHO05D006337 2.0e-29 134.4 421 63.9
unitig_748.g7636 Utricularia gibba HOM05D005238 ORTHO05D006337 2.0e-29 134.4 175 49.1
PSO170G6647 Papaver somniferum HOM05D005238 ORTHO05D006337 2.6e-29 134.0 154 53.9
PSO017G0328 Papaver somniferum HOM05D005238 ORTHO05D006337 7.5e-29 132.5 176 50.0
CDE01G0718 Ceratophyllum demersum HOM05D005238 ORTHO05D006337 9.9e-29 132.1 188 51.6
Carub.0001s1636 Capsella rubella HOM05D005238 ORTHO05D006337 1.3e-28 131.7 157 51.0
CDE12G0696 Ceratophyllum demersum HOM05D005238 ORTHO05D006337 2.2e-28 131.0 124 61.3
Peaxi162Scf00018g00105 Petunia axillaris HOM05D005238 ORTHO05D006337 3.7e-28 130.2 126 55.6
Actinidia07350 Actinidia chinensis HOM05D005238 ORTHO05D006337 1.1e-27 128.6 139 54.7
Thhalv10007778m.g Eutrema salsugineum HOM05D005238 ORTHO05D006337 1.1e-27 128.6 124 58.9
PSO170G0319 Papaver somniferum HOM05D005238 ORTHO05D006337 1.1e-27 128.6 177 50.3
CSS0017399 Camellia sinensis var. sinensis HOM05D005238 ORTHO05D006337 1.9e-27 127.9 113 61.9
Duzib268G1788 Durio zibethinus HOM05D005238 ORTHO05D006337 1.9e-27 127.9 162 46.9
BcaB07g32526 Brassica carinata HOM05D002708 ORTHO05D006337 1.2e-26 125.2 120 55.8
Aqoxy6G00105 Aquilegia oxysepala HOM05D005238 ORTHO05D006337 1.6e-26 124.8 146 51.4
HPP92_011420 Vanilla planifolia HOM05D005238 ORTHO05D006337 4.6e-26 123.2 131 51.9
A09p60810 Brassica napus HOM05D005238 ORTHO05D006337 6.0e-26 122.9 159 49.1
BolC8t51981H Brassica oleracea HOM05D005238 ORTHO05D006337 6.0e-26 122.9 159 49.1
DCAR_013738 Daucus carota HOM05D005238 ORTHO05D006337 3.0e-25 120.6 171 51.5
Aa31LG4G1900 Aethionema arabicum HOM05D005238 ORTHO05D006337 5.1e-25 119.8 151 48.3
DCAR_016821 Daucus carota HOM05D005238 ORTHO05D006337 6.6e-25 119.4 178 50.0
Os05g0105900 Oryza sativa ssp. japonica HOM05D005238 ORTHO05D006337 1.9e-24 117.9 129 53.5
EL10Ac2g03318 Beta vulgaris HOM05D005238 ORTHO05D006337 3.3e-24 117.1 165 50.9
AUR62043127 Chenopodium quinoa HOM05D005238 ORTHO05D006337 4.3e-24 116.7 128 57.0
Lsat_1_v5_gn_7_65541 Lactuca sativa HOM05D005238 ORTHO05D006337 4.3e-24 116.7 154 51.9
Pp3c8_3970 Physcomitrium patens HOM05D005238 ORTHO05D006337 5.6e-24 116.3 156 46.2
AUR62039165 Chenopodium quinoa HOM05D005238 ORTHO05D006337 3.6e-23 113.6 128 55.5
ECA240G2789 Erigeron canadensis HOM05D005238 ORTHO05D006337 6.2e-23 112.8 331 53.5
Os01g0959000 Oryza sativa ssp. japonica HOM05D005238 ORTHO05D006337 6.2e-23 112.8 122 58.2
Zm00001eb362580 Zea mays HOM05D005238 ORTHO05D006337 8.1e-23 112.5 171 45.6
HPP92_027055 Vanilla planifolia HOM05D005238 ORTHO05D006337 1.1e-22 112.1 152 48.0
Zm00001eb140450 Zea mays HOM05D005238 ORTHO05D006337 1.2e-21 108.6 114 55.3
Pp3c12_22790 Physcomitrium patens HOM05D005238 ORTHO05D006337 2.0e-21 107.8 128 53.9
Nitab4.5_0000611g0070 Nicotiana tabacum HOM05D005238 ORTHO05D006337 8.4e-20 102.4 99 54.5
Mapoly0011s0143 Marchantia polymorpha HOM05D005238 ORTHO05D006337 1.9e-19 101.3 154 43.5
CBR_g46302 Chara braunii HOM05D005238 ORTHO05D006337 4.3e-16 90.1 99 51.5
SMO271G0048 Selaginella moellendorffii HOM05D005238 ORTHO05D006337 4.0e-14 83.6 109 43.1
CAN.G24.9 Capsicum annuum HOM05D005238 ORTHO05D006337 1.1e-11 75.5 73 56.2
Sc06g0001540 Simmondsia chinensis HOM05D005238 ORTHO05D006337 5.4e-11 73.2 114 41.2
Pp3c3_28550 Physcomitrium patens HOM05D005238 ORTHO05D006337 1.2e-10 72.0 90 52.2
SMO364G0823 Selaginella moellendorffii HOM05D005238 ORTHO05D006337 1.7e-09 68.2 85 45.9
PSO063G3689 Papaver somniferum HOM05D005238 ORTHO05D006337 6.6e-09 66.2 82 48.8
SGA_v2.0_scaffold7G03583 Striga asiatica HOM05D005238 ORTHO05D006337 7.3e-08 62.8 57 59.6
COL.COLO4_16853 Corchorus olitorius HOM05D000629 ORTHO05D016154 8.1e-07 59.3 47 57.4
Cre03.g164950 Chlamydomonas reinhardtii HOM05D005238 ORTHO05D006337 9.0e-06 55.8 81 40.7


User provided reference genes

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