Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C025972.2 Cucumis melo HOM05D005707 ORTHO05D007276 0.0e+00 1927.9 959 100.0
CsaV3_6G009510 Cucumis sativus L. HOM05D005707 ORTHO05D007276 0.0e+00 1879.4 959 97.7
ClCG02G009340 Citrullus lanatus HOM05D005707 ORTHO05D007276 0.0e+00 1871.7 959 97.0
Sed0013138 Sechium edule HOM05D005707 ORTHO05D007276 0.0e+00 1798.9 959 94.0
Sed0020801 Sechium edule HOM05D005707 ORTHO05D007276 0.0e+00 1754.2 959 90.8
Potri.014G165400 Populus trichocarpa HOM05D005707 ORTHO05D007276 0.0e+00 1639.0 963 84.4
Cfa007084 Carpinus fangiana HOM05D005707 ORTHO05D007276 0.0e+00 1636.7 962 84.6
Sabra14G0126000 Salix brachista HOM05D005707 ORTHO05D007276 0.0e+00 1635.5 962 83.8
PGR142G3494 Punica granatum HOM05D005707 ORTHO05D007276 0.0e+00 1634.4 961 83.8
Gorai.007G166700 Gossypium raimondii HOM05D005707 ORTHO05D007276 0.0e+00 1632.5 962 83.9
Gohir.D11G156360 Gossypium hirsutum HOM05D005707 ORTHO05D007276 0.0e+00 1631.3 962 83.8
Haze_03608 Corylus avellana HOM05D005707 ORTHO05D007276 0.0e+00 1630.9 964 84.0
Manes.13G062700 Manihot esculenta HOM05D005707 ORTHO05D007276 0.0e+00 1629.0 962 83.9
Gohir.A11G149550 Gossypium hirsutum HOM05D005707 ORTHO05D007276 0.0e+00 1626.7 962 83.5
TAR626G1120 Trochodendron aralioides HOM05D005707 ORTHO05D007276 0.0e+00 1625.9 963 82.9
Dinv07863 Davidia involucrata HOM05D005707 ORTHO05D007276 0.0e+00 1625.5 964 83.4
Prupe.3G200600 Prunus persica HOM05D005707 ORTHO05D007276 0.0e+00 1625.1 947 85.0
MD17G1113900 Malus domestica HOM05D005707 ORTHO05D007276 0.0e+00 1622.1 954 84.4
RcHm_v2.0_Chr2g0156491 Rosa chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1617.4 952 84.3
Ciclev10018207m.g Citrus clementina HOM05D005707 ORTHO05D007276 0.0e+00 1615.5 960 83.9
Duzib138G1526 Durio zibethinus HOM05D005707 ORTHO05D007276 0.0e+00 1610.9 962 83.1
MD09G1123500 Malus domestica HOM05D005707 ORTHO05D007276 0.0e+00 1610.9 954 84.0
CiPaw.07G002400 Carya illinoinensis HOM05D005707 ORTHO05D007276 0.0e+00 1608.2 963 83.6
Manes.12G065301 Manihot esculenta HOM05D005707 ORTHO05D007276 0.0e+00 1607.8 956 83.4
TWI75G1501 Tripterygium wilfordii HOM05D005707 ORTHO05D007276 0.0e+00 1606.3 953 83.6
FvH4_6g40910 Fragaria vesca HOM05D005707 ORTHO05D007276 0.0e+00 1605.5 950 84.0
FAN14G2372 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1604.3 950 83.9
FAN05G2777 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1598.9 951 83.7
CANSAT64G1567 Cannabis sativa HOM05D005707 ORTHO05D007276 0.0e+00 1596.6 962 82.7
TWI18G1214 Tripterygium wilfordii HOM05D005707 ORTHO05D007276 0.0e+00 1596.6 952 82.9
FAN02G0692 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1592.0 951 83.3
GSVIVG01030049001 Vitis vinifera HOM05D005707 ORTHO05D007276 0.0e+00 1591.6 962 83.1
Nn1g03422 Nelumbo nucifera HOM05D005707 ORTHO05D007276 0.0e+00 1587.8 962 81.0
FAN09G4573 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1585.1 951 82.9
Eucgr.A01050 Eucalyptus grandis HOM05D005707 ORTHO05D007276 0.0e+00 1584.7 949 82.5
VMungo0331G1616 Vigna mungo HOM05D005707 ORTHO05D007276 0.0e+00 1580.1 972 81.4
Aqoxy2G03044 Aquilegia oxysepala HOM05D005707 ORTHO05D007276 0.0e+00 1579.7 963 81.1
arahy.Tifrunner.gnm1.ann1.T3MKLR Arachis hypogaea HOM05D005707 ORTHO05D007276 0.0e+00 1578.9 966 81.0
Hma1.2p1_1267F.1_g271460 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 0.0e+00 1578.9 944 82.8
Atru.BG.42.p Acer truncatum HOM05D005707 ORTHO05D007276 0.0e+00 1576.6 941 83.1
Lj1g0027558 Lotus japonicus HOM05D005707 ORTHO05D007276 0.0e+00 1575.5 970 80.7
Glyma.03G104400 Glycine max HOM05D005707 ORTHO05D007276 0.0e+00 1575.1 969 80.7
Ca_27368_v3 Cicer arietinum L. HOM05D005707 ORTHO05D007276 0.0e+00 1574.7 972 80.7
CSS0003308 Camellia sinensis var. sinensis HOM05D005707 ORTHO05D007276 0.0e+00 1573.9 963 81.3
CSS0049316 Camellia sinensis var. sinensis HOM05D005707 ORTHO05D007276 0.0e+00 1573.9 963 81.3
Glyma.07G119500 Glycine max HOM05D005707 ORTHO05D007276 0.0e+00 1573.5 970 80.6
Phvul.010G042100 Phaseolus vulgaris HOM05D005707 ORTHO05D007276 0.0e+00 1570.8 971 80.6
Actinidia09778 Actinidia chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1569.3 960 81.1
Lj6g0020016 Lotus japonicus HOM05D005707 ORTHO05D007276 0.0e+00 1567.0 971 80.3
Nn1g03246 Nelumbo nucifera HOM05D005707 ORTHO05D007276 0.0e+00 1563.9 949 80.2
MBI16_g36319_MAGBIO Magnolia biondii HOM05D005707 ORTHO05D007276 0.0e+00 1563.5 963 80.9
Rhsim06G0174400 Rhododendron simsii HOM05D005707 ORTHO05D007276 0.0e+00 1562.7 969 80.3
QL06p053011 Quercus lobata HOM05D005707 ORTHO05D007276 0.0e+00 1562.0 971 80.5
arahy.Tifrunner.gnm1.ann1.DQM4AF Arachis hypogaea HOM05D005707 ORTHO05D007276 0.0e+00 1556.6 1000 78.2
Lj8A134G73 Lonicera japonica HOM05D005707 ORTHO05D007276 0.0e+00 1543.5 963 80.1
Lj1C792T2 Lonicera japonica HOM05D005707 ORTHO05D007276 0.0e+00 1541.9 961 79.2
Lalb_Chr19g0124221 Lupinus albus HOM05D005707 ORTHO05D007276 0.0e+00 1540.4 973 78.6
PSO732G0538 Papaver somniferum HOM05D005707 ORTHO05D007276 0.0e+00 1537.7 962 77.5
TPR.G3804 Trifolium pratense HOM05D005707 ORTHO05D007276 0.0e+00 1534.2 969 78.6
CAN.G308.64 Capsicum annuum HOM05D005707 ORTHO05D007276 0.0e+00 1533.1 965 78.8
Medtr1g019500 Medicago truncatula HOM05D005707 ORTHO05D007276 0.0e+00 1533.1 972 78.4
Oeu040469.1 Olea europaea HOM05D005707 ORTHO05D007276 0.0e+00 1531.9 952 79.8
PGSC0003DMG400026068 Solanum tuberosum HOM05D005707 ORTHO05D007276 0.0e+00 1530.8 963 78.6
Sopen06g023670 Solanum pennellii HOM05D005707 ORTHO05D007276 0.0e+00 1529.6 963 78.7
Solyc06g065170.4 Solanum lycopersicum HOM05D005707 ORTHO05D007276 0.0e+00 1529.2 963 78.5
PSO675G5925 Papaver somniferum HOM05D005707 ORTHO05D007276 0.0e+00 1528.8 963 77.3
Nitab4.5_0001082g0050 Nicotiana tabacum HOM05D005707 ORTHO05D007276 0.0e+00 1526.9 965 78.5
Sp3g23690 Schrenkiella parvula HOM05D005707 ORTHO05D007276 0.0e+00 1524.6 943 79.9
SpUn0142_0010 Schrenkiella parvula HOM05D005707 ORTHO05D007276 0.0e+00 1524.6 943 79.9
THA.LOC104808851 Tarenaya hassleriana HOM05D005707 ORTHO05D007276 0.0e+00 1520.4 960 79.3
Thhalv10002393m.g Eutrema salsugineum HOM05D005707 ORTHO05D007276 0.0e+00 1518.1 943 79.4
HanXRQChr03g0075251 Helianthus annuus HOM05D005707 ORTHO05D007276 0.0e+00 1517.7 961 78.7
A07p06540 Brassica napus HOM05D005707 ORTHO05D007276 0.0e+00 1517.3 943 79.3
Nitab4.5_0000303g0290 Nicotiana tabacum HOM05D005707 ORTHO05D007276 0.0e+00 1515.0 965 78.0
BraA07t28449Z Brassica rapa HOM05D005707 ORTHO05D007276 0.0e+00 1512.7 943 79.1
BcaB06g26833 Brassica carinata HOM05D005707 ORTHO05D007276 0.0e+00 1511.1 943 79.5
BcaC06g35905 Brassica carinata HOM05D005707 ORTHO05D007276 0.0e+00 1511.1 943 78.9
BolC7t41423H Brassica oleracea HOM05D005707 ORTHO05D007276 0.0e+00 1511.1 943 78.9
MSTRG.14925 Avicennia marina HOM05D005707 ORTHO05D007276 0.0e+00 1510.4 957 79.0
AL3G42770 Arabidopsis lyrata HOM05D005707 ORTHO05D007276 0.0e+00 1508.4 945 79.2
Carub.0003s2668 Capsella rubella HOM05D005707 ORTHO05D007276 0.0e+00 1508.0 945 78.9
ECA240G2058 Erigeron canadensis HOM05D005707 ORTHO05D007276 0.0e+00 1507.7 944 79.0
C07p09820 Brassica napus HOM05D005707 ORTHO05D007276 0.0e+00 1507.3 943 78.8
Peaxi162Scf00268g00614 Petunia axillaris HOM05D005707 ORTHO05D007276 0.0e+00 1505.0 958 78.4
Lsat_1_v5_gn_0_5460 Lactuca sativa HOM05D005707 ORTHO05D007276 0.0e+00 1501.5 964 78.1
AUR62025658 Chenopodium quinoa HOM05D005707 ORTHO05D007276 0.0e+00 1499.6 964 77.9
Migut.M00030 Erythranthe guttata HOM05D005707 ORTHO05D007276 0.0e+00 1499.6 966 78.2
AT2G05170 Arabidopsis thaliana HOM05D005707 ORTHO05D007276 0.0e+00 1495.7 944 78.3
Cc07_g12010 Coffea canephora HOM05D005707 ORTHO05D007276 0.0e+00 1495.7 951 78.3
EL10Ac7g18165 Beta vulgaris HOM05D005707 ORTHO05D007276 0.0e+00 1494.9 965 77.7
Hund18608 Selenicereus undatus HOM05D005707 ORTHO05D007276 0.0e+00 1493.8 981 76.5
Aa31LG9G17700 Aethionema arabicum HOM05D005707 ORTHO05D007276 0.0e+00 1492.2 959 77.1
DCAR_012906 Daucus carota HOM05D005707 ORTHO05D007276 0.0e+00 1491.9 950 77.9
CARHR103040 Cardamine hirsuta HOM05D005707 ORTHO05D007276 0.0e+00 1491.1 945 78.6
AUR62001346 Chenopodium quinoa HOM05D005707 ORTHO05D007276 0.0e+00 1491.1 964 77.4
Ah.15g094340 Amaranthus hybridus HOM05D005707 ORTHO05D007276 0.0e+00 1490.7 964 78.0
Lsat_1_v5_gn_9_90020 Lactuca sativa HOM05D005707 ORTHO05D007276 0.0e+00 1489.9 956 77.9
vmacro12103 Vaccinium macrocarpon HOM05D005707 ORTHO05D007276 0.0e+00 1488.8 965 77.3
COL.COLO4_09234 Corchorus olitorius HOM05D005707 ORTHO05D007276 0.0e+00 1476.1 969 77.4
ATR0626G192 Amborella trichopoda HOM05D005707 ORTHO05D007276 0.0e+00 1472.2 944 77.2
SGA_v2.0_scaffold73G24514 Striga asiatica HOM05D005707 ORTHO05D007276 0.0e+00 1429.1 963 74.5
Thecc.01G191800 Theobroma cacao HOM05D005707 ORTHO05D007276 0.0e+00 1425.2 833 84.8
Os04g0382700 Oryza sativa ssp. japonica HOM05D005707 ORTHO05D007276 0.0e+00 1420.2 955 72.1
Zm00001eb420950 Zea mays HOM05D005707 ORTHO05D007276 0.0e+00 1419.4 953 72.1
unitig_37.g12597 Utricularia gibba HOM05D005707 ORTHO05D007276 0.0e+00 1353.6 943 72.3
SEGI_38374 Sequoiadendron giganteum HOM05D005707 ORTHO05D007276 0.0e+00 1347.0 968 69.4
Psat6g013160 Pisum sativum HOM05D005707 ORTHO05D007276 0.0e+00 1330.5 846 78.4
Oeu012343.5 Olea europaea HOM05D005707 ORTHO05D007276 0.0e+00 1319.7 949 71.8
DCAR_028089 Daucus carota HOM05D005707 ORTHO05D007276 0.0e+00 1315.1 855 76.1
Cpa.g.sc211.13 Carica papaya HOM05D005707 ORTHO05D007276 0.0e+00 1261.9 960 67.4
Lalb_Chr01g0023301 Lupinus albus HOM05D005707 ORTHO05D007276 0.0e+00 1239.9 736 82.5
Mapoly0022s0120 Marchantia polymorpha HOM05D005707 ORTHO05D007276 0.0e+00 1208.0 999 61.2
AagrBONN_evm.TU.Sc2ySwM_344.1573 Anthoceros agrestis HOM05D005707 ORTHO05D007276 0.0e+00 1201.4 962 61.7
Sc15g0001000 Simmondsia chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1149.8 706 80.7
Pp3c25_5560 Physcomitrium patens HOM05D005707 ORTHO05D007276 0.0e+00 1115.1 1007 56.0
SMO329G0026 Selaginella moellendorffii HOM05D005707 ORTHO05D007276 0.0e+00 1094.7 943 59.6
Hma1.2p1_2056F.1_g312820 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 0.0e+00 1086.6 670 80.6
Hma1.2p1_1267F.1_g271470 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 6.6e-312 1073.5 654 81.3
CDE12G0215 Ceratophyllum demersum HOM05D005707 ORTHO05D007276 1.7e-278 963.0 719 65.6
CBR_g20017 Chara braunii HOM05D005707 ORTHO05D007276 1.9e-221 773.5 760 51.6
Lsat_1_v5_gn_9_104540 Lactuca sativa HOM05D005707 ORTHO05D007276 1.0e-214 751.1 465 78.7
HPP92_028369 Vanilla planifolia HOM05D005707 ORTHO05D007276 1.9e-184 650.6 443 72.5
HPP92_028368 Vanilla planifolia HOM05D005707 ORTHO05D007276 1.7e-132 478.0 304 73.4
Cre02.g095074 Chlamydomonas reinhardtii HOM05D005707 ORTHO05D007276 5.3e-110 403.3 1094 27.0
PRCOL_00006472 Prasinoderma coloniale HOM05D005707 ORTHO05D007276 7.9e-106 389.4 637 38.5
Lalb_Chr01g0023291 Lupinus albus HOM05D005707 ORTHO05D007276 3.0e-81 307.8 202 74.3
Nn6g32392 Nelumbo nucifera HOM05D005707 ORTHO05D007276 1.3e-71 275.8 207 69.1
HPP92_014038 Vanilla planifolia HOM05D005707 ORTHO05D007276 1.9e-59 235.3 181 68.0
SEGI_06176 Sequoiadendron giganteum HOM05D005707 ORTHO05D007276 1.8e-57 228.8 299 45.5
Nn6g32391 Nelumbo nucifera HOM05D005707 ORTHO05D007276 8.8e-49 199.9 125 79.2
Peaxi162Scf00585g00082 Petunia axillaris HOM05D000636 ORTHO05D002338 2.0e-45 188.7 134 72.4
HPP92_014036 Vanilla planifolia HOM05D005707 ORTHO05D007276 2.6e-40 171.8 200 45.0
HPP92_014037 Vanilla planifolia HOM05D005707 ORTHO05D048631 3.5e-37 161.4 139 60.4
Nn2g13354 Nelumbo nucifera HOM05D005707 ORTHO05D007276 2.3e-28 132.1 64 92.2
VMungo0331G0660 Vigna mungo HOM05D000100 ORTHO05D000052 1.3e-15 89.7 80 62.5
MD09G1123100 Malus domestica HOM05D005707 ORTHO05D048631 9.9e-08 63.5 45 68.9
Actinidia07884 Actinidia chinensis HOM05D005707 ORTHO05D057301 2.2e-07 62.4 101 38.6


User provided reference genes

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