Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C018438.2 Cucumis melo HOM05D006779 ORTHO05D008491 5.0e-98 361.3 209 100.0
CsaV3_7G008730 Cucumis sativus L. HOM05D006779 ORTHO05D008491 4.7e-96 354.8 209 98.1
Sed0011670 Sechium edule HOM05D006779 ORTHO05D008491 2.3e-87 325.9 209 90.9
ClCG02G005780 Citrullus lanatus HOM05D006779 ORTHO05D008491 8.9e-79 297.4 251 74.1
CiPaw.05G054000 Carya illinoinensis HOM05D006779 ORTHO05D008491 1.9e-60 236.5 207 71.0
Sabra09G0080600 Salix brachista HOM05D006779 ORTHO05D008491 1.2e-59 233.8 206 68.9
FAN15G3147 Fragaria x ananassa HOM05D006779 ORTHO05D008491 2.7e-59 232.6 208 66.8
FAN20G2937 Fragaria x ananassa HOM05D006779 ORTHO05D008491 2.7e-59 232.6 208 66.8
FAN24G0787 Fragaria x ananassa HOM05D006779 ORTHO05D008491 4.6e-59 231.9 208 67.3
FvH4_2g06680 Fragaria vesca HOM05D006779 ORTHO05D008491 1.3e-58 230.3 208 66.8
Potri.009G105500 Populus trichocarpa HOM05D006779 ORTHO05D008491 6.6e-58 228.0 206 68.0
Haze_01903 Corylus avellana HOM05D006779 ORTHO05D008491 8.6e-58 227.6 207 71.0
QL11p037315 Quercus lobata HOM05D006779 ORTHO05D008491 1.1e-57 227.3 207 70.0
RcHm_v2.0_Chr6g0258731 Rosa chinensis HOM05D006779 ORTHO05D008491 7.3e-57 224.6 207 63.8
Prupe.8G119200 Prunus persica HOM05D006779 ORTHO05D008491 4.0e-55 218.8 207 67.1
MD05G1075500 Malus domestica HOM05D006779 ORTHO05D008491 7.5e-54 214.5 207 68.1
GSVIVG01031784001 Vitis vinifera HOM05D006779 ORTHO05D008491 1.9e-52 209.9 208 67.3
Manes.15G142500 Manihot esculenta HOM05D006779 ORTHO05D008491 1.6e-51 206.8 205 66.8
PGR142G0644 Punica granatum HOM05D006779 ORTHO05D008491 1.6e-51 206.8 207 64.7
Eucgr.I01169 Eucalyptus grandis HOM05D006779 ORTHO05D008491 2.7e-51 206.1 205 62.9
Dinv23582 Davidia involucrata HOM05D006779 ORTHO05D008491 4.6e-51 205.3 216 61.6
Glyma.01G146900 Glycine max HOM05D006779 ORTHO05D008491 7.8e-51 204.5 208 63.9
Glyma.10G112900 Glycine max HOM05D006779 ORTHO05D008491 7.8e-51 204.5 208 63.9
Lalb_Chr09g0328181 Lupinus albus HOM05D006779 ORTHO05D008491 7.8e-51 204.5 208 64.4
CSS0011815 Camellia sinensis var. sinensis HOM05D000591 ORTHO05D000579 2.3e-50 203.0 213 58.7
arahy.Tifrunner.gnm1.ann1.8ZG09Z Arachis hypogaea HOM05D006779 ORTHO05D008491 2.5e-49 199.5 210 61.9
CANSAT25G0176 Cannabis sativa HOM05D006779 ORTHO05D008491 2.5e-49 199.5 206 65.0
Phvul.007G247000 Phaseolus vulgaris HOM05D006779 ORTHO05D008491 5.6e-49 198.4 208 58.7
Atru.chr5.2773 Acer truncatum HOM05D006779 ORTHO05D008491 4.7e-48 195.3 211 65.4
Glyma.02G159500 Glycine max HOM05D006779 ORTHO05D008491 8.1e-48 194.5 209 62.7
Actinidia00459 Actinidia chinensis HOM05D006779 ORTHO05D008491 3.1e-47 192.6 212 54.7
Dinv42131 Davidia involucrata HOM05D006779 ORTHO05D008491 3.1e-47 192.6 215 60.0
arahy.Tifrunner.gnm1.ann1.T066AP Arachis hypogaea HOM05D006779 ORTHO05D008491 5.2e-47 191.8 216 60.2
Thecc.02G097400 Theobroma cacao HOM05D006779 ORTHO05D008491 8.9e-47 191.0 207 66.7
Oeu064516.1 Olea europaea HOM05D006779 ORTHO05D008491 5.8e-46 188.3 216 54.6
Nn5g30192 Nelumbo nucifera HOM05D006779 ORTHO05D008491 7.6e-46 188.0 215 61.9
Nitab4.5_0004334g0110 Nicotiana tabacum HOM05D006779 ORTHO05D008491 9.9e-46 187.6 215 56.7
MBI02_g21199_MAGBIO Magnolia biondii HOM05D006779 ORTHO05D008491 1.3e-45 187.2 229 60.3
arahy.Tifrunner.gnm1.ann1.QJKD6Y Arachis hypogaea HOM05D006779 ORTHO05D008491 2.2e-45 186.4 214 60.3
TWI31G0027 Tripterygium wilfordii HOM05D006779 ORTHO05D008491 2.2e-45 186.4 208 63.0
Ciclev10029963m.g Citrus clementina HOM05D006779 ORTHO05D008491 2.9e-45 186.0 210 62.4
SalBow6G0615 Salvia bowleyana HOM05D006779 ORTHO05D008491 2.9e-45 186.0 213 60.1
TWI79G0004 Tripterygium wilfordii HOM05D006779 ORTHO05D008491 3.8e-45 185.7 208 62.0
Migut.B00314 Erythranthe guttata HOM05D006779 ORTHO05D008491 4.9e-45 185.3 216 57.9
PGSC0003DMG400025811 Solanum tuberosum HOM05D006779 ORTHO05D008491 8.4e-45 184.5 215 54.4
Sopen01g050660 Solanum pennellii HOM05D006779 ORTHO05D008491 1.9e-44 183.3 215 54.0
Cc02_g18560 Coffea canephora HOM05D006779 ORTHO05D008491 3.2e-44 182.6 214 57.9
Sc18g0004890 Simmondsia chinensis HOM05D006779 ORTHO05D008491 3.2e-44 182.6 205 62.0
Solyc01g108430.3 Solanum lycopersicum HOM05D006779 ORTHO05D008491 3.2e-44 182.6 215 54.4
MSTRG.16763 Avicennia marina HOM05D006779 ORTHO05D008491 1.6e-43 180.3 207 59.4
Psat7g121840 Pisum sativum HOM05D006779 ORTHO05D008491 4.6e-43 178.7 212 59.4
Nitab4.5_0005583g0020 Nicotiana tabacum HOM05D006779 ORTHO05D008491 1.0e-42 177.6 215 55.8
Ca_18655_v3 Cicer arietinum L. HOM05D006779 ORTHO05D008491 2.3e-42 176.4 208 59.6
Gorai.005G240600 Gossypium raimondii HOM05D006779 ORTHO05D008491 2.3e-42 176.4 207 61.8
Gohir.D02G212600 Gossypium hirsutum HOM05D006779 ORTHO05D008491 3.0e-42 176.0 207 61.8
Gohir.A03G191700 Gossypium hirsutum HOM05D006779 ORTHO05D008491 5.1e-42 175.3 207 61.8
CAN.G322.16 Capsicum annuum HOM05D006779 ORTHO05D008491 1.9e-41 173.3 206 57.8
vmacro02181 Vaccinium macrocarpon HOM05D006779 ORTHO05D008491 1.6e-40 170.2 250 45.6
Sp1g36470 Schrenkiella parvula HOM05D006779 ORTHO05D008491 2.8e-40 169.5 214 54.2
Rhsim11G0168500 Rhododendron simsii HOM05D006779 ORTHO05D008491 6.2e-40 168.3 245 45.3
SGA_v2.0_scaffold90G27693 Striga asiatica HOM05D006779 ORTHO05D008491 1.1e-39 167.5 215 50.2
FAN20G1913 Fragaria x ananassa HOM05D006779 ORTHO05D008491 1.8e-39 166.8 151 67.5
Aa31LG10G4420 Aethionema arabicum HOM05D006779 ORTHO05D008491 2.4e-39 166.4 208 54.8
Lj5C207T4 Lonicera japonica HOM05D006779 ORTHO05D008491 3.1e-39 166.0 218 56.0
Aqoxy6G01411 Aquilegia oxysepala HOM05D006779 ORTHO05D008491 4.0e-39 165.6 218 54.6
Peaxi162Scf00016g01637 Petunia axillaris HOM05D006779 ORTHO05D008491 9.0e-39 164.5 202 55.9
SGA_v2.0_scaffold90G27688 Striga asiatica HOM05D006779 ORTHO05D008491 1.2e-38 164.1 215 49.8
COL.COLO4_32686 Corchorus olitorius HOM05D006779 ORTHO05D008491 1.5e-38 163.7 206 61.2
Thhalv10011741m.g Eutrema salsugineum HOM05D006779 ORTHO05D008491 2.6e-38 162.9 214 54.2
unitig_60.g25783 Utricularia gibba HOM05D006779 ORTHO05D008491 7.6e-38 161.4 209 56.0
HPP92_004257 Vanilla planifolia HOM05D006779 ORTHO05D008491 9.9e-38 161.0 215 57.7
BraA06t23562Z Brassica rapa HOM05D006779 ORTHO05D008491 2.2e-37 159.8 216 52.8
A06p03540 Brassica napus HOM05D006779 ORTHO05D008491 2.9e-37 159.5 215 53.0
AT1G49590 Arabidopsis thaliana HOM05D006779 ORTHO05D008491 3.8e-37 159.1 211 55.9
C06p04620 Brassica napus HOM05D006779 ORTHO05D008491 4.9e-37 158.7 215 52.6
BolC6t35591H Brassica oleracea HOM05D006779 ORTHO05D008491 6.4e-37 158.3 215 52.1
Lj4g0006122 Lotus japonicus HOM05D006779 ORTHO05D008491 8.4e-37 157.9 208 55.8
AUR62034187 Chenopodium quinoa HOM05D006779 ORTHO05D008491 7.1e-36 154.8 205 59.5
DCAR_029018 Daucus carota HOM05D000144 ORTHO05D003364 7.1e-36 154.8 216 56.9
EL10Ac3g06870 Beta vulgaris HOM05D006779 ORTHO05D008491 1.2e-35 154.1 205 56.6
HPP92_004235 Vanilla planifolia HOM05D006779 ORTHO05D008491 4.6e-35 152.1 215 57.2
PSO541G4058 Papaver somniferum HOM05D006779 ORTHO05D008491 1.3e-34 150.6 217 54.8
Ah.04g152710 Amaranthus hybridus HOM05D006779 ORTHO05D008491 3.0e-34 149.4 205 50.7
Carub.0001s3879 Capsella rubella HOM05D006779 ORTHO05D008491 3.9e-34 149.1 213 53.1
ECA234G4762 Erigeron canadensis HOM05D006779 ORTHO05D008491 4.3e-33 145.6 207 52.2
Medtr4g086640 Medicago truncatula HOM05D006779 ORTHO05D008491 3.6e-32 142.5 209 52.6
Hund00325 Selenicereus undatus HOM05D006779 ORTHO05D008491 2.4e-31 139.8 205 53.7
BcaNung06359 Brassica carinata HOM05D006779 ORTHO05D008491 3.1e-31 139.4 211 48.8
PSO675G5018 Papaver somniferum HOM05D006779 ORTHO05D008491 4.0e-31 139.0 217 52.5
AUR62022456 Chenopodium quinoa HOM05D006779 ORTHO05D008491 1.5e-30 137.1 245 50.2
AL1G56960 Arabidopsis lyrata HOM05D006779 ORTHO05D008491 3.4e-30 136.0 226 49.1
HanXRQChr10g0303251 Helianthus annuus HOM05D006779 ORTHO05D008491 3.4e-30 136.0 212 50.5
CSS0024784 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 2.2e-29 133.3 188 46.3
SHI05379 Sapria himalayana HOM05D006779 ORTHO05D008491 1.9e-28 130.2 209 49.8
CSS0021002 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 9.3e-28 127.9 188 45.2
TPR.G23531 Trifolium pratense HOM05D006779 ORTHO05D008491 1.0e-26 124.4 155 56.8
Lsat_1_v5_gn_5_113321 Lactuca sativa HOM05D006779 ORTHO05D008491 3.0e-26 122.9 214 40.7
CARHR039640 Cardamine hirsuta HOM05D006779 ORTHO05D008491 1.1e-25 120.9 155 57.4
CDE06G1966 Ceratophyllum demersum HOM05D006779 ORTHO05D008491 4.8e-24 115.5 206 42.2
ATR0097G032 Amborella trichopoda HOM05D006779 ORTHO05D008491 1.0e-21 107.8 203 42.4
AUR62042088 Chenopodium quinoa HOM05D006779 ORTHO05D008491 3.2e-20 102.8 203 47.8
CDE03G0027 Ceratophyllum demersum HOM05D006779 ORTHO05D008491 2.7e-19 99.8 197 39.1
Zm00001eb373090 Zea mays HOM05D006779 ORTHO05D008491 2.3e-18 96.7 208 42.8
CSS0022737 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 5.7e-17 92.0 185 38.9
Mapoly0157s0003 Marchantia polymorpha HOM05D006779 ORTHO05D008491 3.7e-16 89.4 252 38.1
TAR628G1516 Trochodendron aralioides HOM05D006779 ORTHO05D008491 2.6e-14 83.2 120 51.7
CSS0005405 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 2.5e-12 76.6 83 56.6
CSS0011003 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 2.5e-12 76.6 83 56.6
CSS0034996 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 2.5e-12 76.6 188 34.6
TAR628G0388 Trochodendron aralioides HOM05D006779 ORTHO05D008491 3.5e-11 72.8 65 63.1
MD10G1090400 Malus domestica HOM05D006779 ORTHO05D008491 7.9e-11 71.6 84 58.3
AagrBONN_evm.TU.Sc2ySwM_344.4302 Anthoceros agrestis HOM05D006779 ORTHO05D008491 1.3e-10 70.9 242 35.5
Pp3c14_26080 Physcomitrium patens HOM05D006779 ORTHO05D008491 2.3e-10 70.1 246 37.0
Ah.08g219340 Amaranthus hybridus HOM05D006779 ORTHO05D008491 5.1e-10 68.9 93 49.5
CBR_g17671 Chara braunii HOM05D006779 ORTHO05D008491 8.2e-08 61.6 292 32.5
SMO367G0139 Selaginella moellendorffii HOM05D006779 ORTHO05D008491 1.1e-07 61.2 239 32.6
Cpa.g.sc62.36 Carica papaya HOM05D006779 ORTHO05D008491 3.4e-06 56.2 54 59.3


User provided reference genes

Program Settings