Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C016065.2 Cucumis melo HOM05D003939 ORTHO05D005979 0.0e+00 3394.0 1764 100.0
CsaV3_4G008740 Cucumis sativus L. HOM05D003939 ORTHO05D005979 0.0e+00 2829.3 1699 89.2
Sed0008583 Sechium edule HOM05D003939 ORTHO05D005979 0.0e+00 2728.0 1828 80.1
ClCG07G007360 Citrullus lanatus HOM05D003939 ORTHO05D005979 0.0e+00 2417.9 1503 85.9
QL02p067905 Quercus lobata HOM05D003939 ORTHO05D005979 0.0e+00 2265.3 1808 67.4
Cfa007652 Carpinus fangiana HOM05D003939 ORTHO05D005979 0.0e+00 2208.7 1826 66.6
Manes.01G097400 Manihot esculenta HOM05D003939 ORTHO05D005979 0.0e+00 2161.3 1822 65.8
MD17G1057600 Malus domestica HOM05D003939 ORTHO05D005979 0.0e+00 2152.9 1819 65.1
Prupe.3G256700 Prunus persica HOM05D003939 ORTHO05D005979 0.0e+00 2152.9 1824 65.3
Thecc.04G092900 Theobroma cacao HOM05D003939 ORTHO05D005979 0.0e+00 2128.6 1812 64.5
Potri.017G092600 Populus trichocarpa HOM05D003939 ORTHO05D005979 0.0e+00 2128.2 1828 65.0
GSVIVG01011514001 Vitis vinifera HOM05D003939 ORTHO05D005979 0.0e+00 2118.2 1801 65.8
Duzib264G0523 Durio zibethinus HOM05D003939 ORTHO05D005979 0.0e+00 2112.0 1816 64.5
MD09G1064300 Malus domestica HOM05D003939 ORTHO05D005979 0.0e+00 2109.0 1823 64.2
Ciclev10010894m.g Citrus clementina HOM05D003939 ORTHO05D005979 0.0e+00 2101.6 1830 63.2
CSS0011135 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 0.0e+00 2099.7 1818 64.9
TWI60G0125 Tripterygium wilfordii HOM05D003939 ORTHO05D005979 0.0e+00 2097.4 1824 64.6
Sabra17G0081700 Salix brachista HOM05D003939 ORTHO05D005979 0.0e+00 2093.2 1886 62.8
COL.COLO4_21400 Corchorus olitorius HOM05D003939 ORTHO05D005979 0.0e+00 2080.4 1833 62.3
PGR083G1596 Punica granatum HOM05D003939 ORTHO05D005979 0.0e+00 2077.4 1809 63.2
Lalb_Chr06g0175001 Lupinus albus HOM05D003939 ORTHO05D005979 0.0e+00 2075.4 1833 63.7
CANSAT64G0725 Cannabis sativa HOM05D003939 ORTHO05D005979 0.0e+00 2073.5 1772 63.7
Gohir.A09G010200 Gossypium hirsutum HOM05D003939 ORTHO05D005979 0.0e+00 2073.1 1811 63.2
Gorai.006G011000 Gossypium raimondii HOM05D003939 ORTHO05D005979 0.0e+00 2072.7 1813 62.7
Dinv33821 Davidia involucrata HOM05D003939 ORTHO05D005979 0.0e+00 2072.0 1746 65.3
RcHm_v2.0_Chr2g0166131 Rosa chinensis HOM05D003939 ORTHO05D005979 0.0e+00 2068.1 1825 63.3
Eucgr.J01370 Eucalyptus grandis HOM05D003939 ORTHO05D005979 0.0e+00 2065.4 1808 64.4
Glyma.13G057300 Glycine max HOM05D003939 ORTHO05D005979 0.0e+00 2041.2 1824 62.1
Atru.chr8.419 Acer truncatum HOM05D003939 ORTHO05D005979 0.0e+00 2033.8 1707 65.3
Nn3g17411 Nelumbo nucifera HOM05D003939 ORTHO05D005979 0.0e+00 2033.8 1812 62.7
FAN05G1397 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 2029.2 1830 62.6
FAN09G4101 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 2026.5 1830 62.6
Lj2g0019419 Lotus japonicus HOM05D003939 ORTHO05D005979 0.0e+00 2023.8 1838 60.9
FvH4_6g47080 Fragaria vesca HOM05D003939 ORTHO05D005979 0.0e+00 2022.3 1830 62.2
arahy.Tifrunner.gnm1.ann1.U2J8P8 Arachis hypogaea HOM05D003939 ORTHO05D005979 0.0e+00 2018.8 1800 62.1
FAN02G0596 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 2016.9 1831 62.4
arahy.Tifrunner.gnm1.ann1.HNPA74 Arachis hypogaea HOM05D003939 ORTHO05D005979 0.0e+00 1999.2 1835 60.8
Phvul.004G035100 Phaseolus vulgaris HOM05D003939 ORTHO05D005979 0.0e+00 1997.2 1826 61.2
VMungo0464G1977 Vigna mungo HOM05D003939 ORTHO05D005979 0.0e+00 1996.9 1881 60.2
Medtr6g015060 Medicago truncatula HOM05D003939 ORTHO05D005979 0.0e+00 1992.2 1834 60.4
FAN14G2443 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 1970.3 1830 61.4
Rhsim10G0043700 Rhododendron simsii HOM05D003939 ORTHO05D005979 0.0e+00 1958.0 1894 58.8
vmacro05651 Vaccinium macrocarpon HOM05D003939 ORTHO05D005979 0.0e+00 1956.8 1776 61.7
Ca_04301_v3 Cicer arietinum L. HOM05D003939 ORTHO05D005979 0.0e+00 1942.2 1701 62.1
THA.LOC104821002 Tarenaya hassleriana HOM05D003939 ORTHO05D005979 0.0e+00 1942.2 1869 58.4
DCAR_025422 Daucus carota HOM05D003939 ORTHO05D005979 0.0e+00 1936.4 1792 59.1
Cc07_g03930 Coffea canephora HOM05D003939 ORTHO05D005979 0.0e+00 1928.3 1837 59.7
Duzib187G1101 Durio zibethinus HOM05D003939 ORTHO05D005979 0.0e+00 1927.9 1815 59.5
AUR62018173 Chenopodium quinoa HOM05D003939 ORTHO05D005979 0.0e+00 1915.2 1813 59.5
AT5G15540 Arabidopsis thaliana HOM05D003939 ORTHO05D005979 0.0e+00 1912.5 1832 57.6
AL6G26400 Arabidopsis lyrata HOM05D003939 ORTHO05D005979 0.0e+00 1909.4 1834 57.9
MSTRG.3009 Avicennia marina HOM05D003939 ORTHO05D005979 0.0e+00 1907.9 1812 58.7
Migut.H00638 Erythranthe guttata HOM05D003939 ORTHO05D005979 0.0e+00 1906.7 1769 59.5
TPR.G10018 Trifolium pratense HOM05D003939 ORTHO05D005979 0.0e+00 1902.5 1760 60.3
Thhalv10012417m.g Eutrema salsugineum HOM05D003939 ORTHO05D005979 0.0e+00 1897.9 1871 57.0
AUR62042423 Chenopodium quinoa HOM05D003939 ORTHO05D005979 0.0e+00 1897.5 1779 59.8
Sp6g28560 Schrenkiella parvula HOM05D003939 ORTHO05D005979 0.0e+00 1897.5 1832 57.4
PSO013G0104 Papaver somniferum HOM05D003939 ORTHO05D005979 0.0e+00 1893.2 1854 58.3
C09p61660 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1891.3 1877 56.5
BolC9t59004H Brassica oleracea HOM05D003939 ORTHO05D005979 0.0e+00 1891.3 1877 56.5
Sopen03g014250 Solanum pennellii HOM05D003939 ORTHO05D005979 0.0e+00 1887.5 1823 58.6
A10p23410 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1886.3 1877 56.6
BraA10t44409Z Brassica rapa HOM05D003939 ORTHO05D005979 0.0e+00 1886.3 1877 56.6
C02p07770 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1885.9 1885 56.9
BolC2t06707H Brassica oleracea HOM05D003939 ORTHO05D005979 0.0e+00 1882.8 1838 57.3
Carub.0006s1371 Capsella rubella HOM05D003939 ORTHO05D005979 0.0e+00 1875.5 1826 57.4
Aa31LG11G14050 Aethionema arabicum HOM05D003939 ORTHO05D005979 0.0e+00 1872.4 1824 56.8
A02p03080 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1871.3 1832 57.3
BraA02t05278Z Brassica rapa HOM05D003939 ORTHO05D005979 0.0e+00 1869.7 1841 57.0
CAN.G381.1 Capsicum annuum HOM05D003939 ORTHO05D005979 0.0e+00 1867.4 1823 58.3
Aqoxy3G03594 Aquilegia oxysepala HOM05D003939 ORTHO05D005979 0.0e+00 1863.2 1779 58.9
SGA_v2.0_scaffold52G19175 Striga asiatica HOM05D003939 ORTHO05D005979 0.0e+00 1857.4 1830 57.7
ECA246G3607 Erigeron canadensis HOM05D003939 ORTHO05D005979 0.0e+00 1854.3 1832 57.7
Lsat_1_v5_gn_3_98161 Lactuca sativa HOM05D003939 ORTHO05D005979 0.0e+00 1833.9 1853 56.7
Actinidia01988 Actinidia chinensis HOM05D003939 ORTHO05D005979 0.0e+00 1831.6 1542 65.7
Haze_14442 Corylus avellana HOM05D003939 ORTHO05D005979 0.0e+00 1830.5 1466 68.3
Sc10g0004620 Simmondsia chinensis HOM05D003939 ORTHO05D005979 0.0e+00 1827.8 1672 61.0
Hund13156 Selenicereus undatus HOM05D003939 ORTHO05D005979 0.0e+00 1817.7 1885 56.4
Solyc03g059420.4 Solanum lycopersicum HOM05D003939 ORTHO05D005979 0.0e+00 1805.0 1743 58.3
EL10Ac2g03123 Beta vulgaris HOM05D003939 ORTHO05D005979 0.0e+00 1789.6 1815 56.8
MBI19_g03793_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D005979 0.0e+00 1776.9 1561 62.9
HanXRQChr17g0546541 Helianthus annuus HOM05D003939 ORTHO05D005979 0.0e+00 1775.8 1836 56.4
Psat1g067400 Pisum sativum HOM05D003939 ORTHO05D005979 0.0e+00 1772.3 1860 55.1
Nitab4.5_0002960g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 0.0e+00 1758.0 1747 58.1
Peaxi162Scf00451g00326 Petunia axillaris HOM05D003939 ORTHO05D005979 0.0e+00 1752.6 1633 60.2
Ah.10g032070 Amaranthus hybridus HOM05D003939 ORTHO05D005979 0.0e+00 1718.7 1883 54.4
SHI25772 Sapria himalayana HOM05D003939 ORTHO05D005979 0.0e+00 1658.7 1716 56.3
Lju41A4T71 Lonicera japonica HOM05D003939 ORTHO05D005979 0.0e+00 1653.3 1547 60.2
Nitab4.5_0001637g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 0.0e+00 1623.2 1681 56.4
Gohir.D09G009300 Gossypium hirsutum HOM05D003939 ORTHO05D005979 0.0e+00 1580.8 1356 63.3
ATR0064G076 Amborella trichopoda HOM05D003939 ORTHO05D005979 0.0e+00 1511.5 1501 56.9
Zm00001eb298600 Zea mays HOM05D003939 ORTHO05D005979 0.0e+00 1461.4 1781 49.3
Zm00001eb118180 Zea mays HOM05D003939 ORTHO05D005979 0.0e+00 1442.6 1616 52.2
PSO063G3321 Papaver somniferum HOM05D003939 ORTHO05D005979 0.0e+00 1357.4 1488 54.5
Mapoly0011s0050 Marchantia polymorpha HOM05D003939 ORTHO05D005979 0.0e+00 1310.0 1814 44.9
TAR371G0557 Trochodendron aralioides HOM05D003939 ORTHO05D005979 0.0e+00 1281.5 1011 69.6
Pp3c15_14600 Physcomitrium patens HOM05D003939 ORTHO05D005979 0.0e+00 1276.2 1786 44.0
SMO116G0168 Selaginella moellendorffii HOM05D003939 ORTHO05D005979 0.0e+00 1240.3 1758 43.7
AagrBONN_evm.TU.Sc2ySwM_344.3096 Anthoceros agrestis HOM05D003939 ORTHO05D005979 0.0e+00 1181.4 1786 41.6
Oeu007060.1 Olea europaea HOM05D003939 ORTHO05D005979 0.0e+00 1124.0 1211 54.7
Glyma.19G029100 Glycine max HOM05D003939 ORTHO05D005979 0.0e+00 1086.2 1013 60.6
HPP92_012299 Vanilla planifolia HOM05D003939 ORTHO05D005979 2.3e-305 1053.1 1012 58.9
Os07g0110400 Oryza sativa ssp. japonica HOM05D003939 ORTHO05D005979 2.4e-278 963.4 935 57.6
SEGI_00927 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 3.5e-277 959.5 1094 50.0
CBR_g19320 Chara braunii HOM05D003939 ORTHO05D005979 4.4e-256 889.4 1537 37.3
CiPaw.03G089600 Carya illinoinensis HOM05D003939 ORTHO05D005979 2.0e-232 810.8 667 67.0
CARHR197770 Cardamine hirsuta HOM05D003939 ORTHO05D005979 1.1e-219 768.5 646 63.5
TAR371G1006 Trochodendron aralioides HOM05D003939 ORTHO05D005979 2.2e-207 727.6 786 55.3
Psat0s5863g0080 Pisum sativum HOM05D003939 ORTHO05D005979 2.2e-178 631.3 507 65.9
HPP92_012253 Vanilla planifolia HOM05D003939 ORTHO05D005979 1.0e-172 612.5 866 44.7
Glyma.19G029000 Glycine max HOM05D003939 ORTHO05D005979 1.6e-165 588.6 566 57.1
HPP92_012298 Vanilla planifolia HOM05D003939 ORTHO05D005979 1.2e-144 519.2 646 48.1
CSS0005126 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 2.7e-136 491.5 511 55.2
PGSC0003DMG400012376 Solanum tuberosum HOM05D003939 ORTHO05D005979 3.5e-136 491.1 499 54.3
SEGI_06328 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 1.4e-132 479.2 523 51.2
DCAR_026524 Daucus carota HOM05D003939 ORTHO05D005979 9.3e-129 466.5 563 49.4
ClCG07G007370 Citrullus lanatus HOM05D003939 ORTHO05D005979 4.8e-125 454.1 290 84.8
Gohir.1Z049344 Gossypium hirsutum HOM05D003939 ORTHO05D005979 2.9e-122 444.9 421 59.1
CDE04G2810 Ceratophyllum demersum HOM05D003939 ORTHO05D005979 2.5e-118 431.8 511 51.3
CSS0039149 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 3.2e-113 414.8 483 51.6
Cpa.g.sc2744.1 Carica papaya HOM05D003939 ORTHO05D005979 1.0e-106 393.3 331 65.9
Hma1.2p1_0481F.1_g162010 Hydrangea macrophylla HOM05D003939 ORTHO05D005979 8.2e-101 373.6 396 56.6
HPP92_012254 Vanilla planifolia HOM05D003939 ORTHO05D005979 1.1e-97 363.2 329 59.9
Cpa.g.sc14.167 Carica papaya HOM05D003939 ORTHO05D005979 7.2e-97 360.5 291 66.0
SEGI_04445 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 1.6e-96 359.4 288 63.5
Prupe.2G279500 Prunus persica HOM05D003939 ORTHO05D005979 1.0e-95 356.7 417 53.0
SEGI_32509 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 4.8e-93 347.8 349 53.0
Psat0s5863g0040 Pisum sativum HOM05D003939 ORTHO05D005979 9.4e-81 307.0 369 52.8
Cre06.g278269 Chlamydomonas reinhardtii HOM05D003939 ORTHO05D005979 4.7e-64 251.5 1425 23.6
Psat0s9359g0040 Pisum sativum HOM05D003939 ORTHO05D005979 1.1e-44 187.2 188 54.8
CiPaw.03G089700 Carya illinoinensis HOM05D003939 ORTHO05D005979 3.5e-43 182.2 171 64.9
BolC9t58997H Brassica oleracea HOM05D003939 ORTHO05D005979 3.9e-42 178.7 125 72.8
MCO01G540 Micromonas commoda HOM05D003939 ORTHO05D005979 8.1e-40 171.0 394 30.7
Hma1.2p1_0481F.1_g162030 Hydrangea macrophylla HOM05D003939 ORTHO05D005979 2.4e-39 169.5 224 46.4
Lju41A4T72 Lonicera japonica HOM05D003939 ORTHO05D005979 2.6e-38 166.0 166 55.4
MELO3C001621.2 Cucumis melo HOM05D003939 ORTHO05D005979 2.1e-35 156.4 78 97.4
MELO3C000805.2 Cucumis melo HOM05D003939 ORTHO05D005979 3.0e-34 152.5 90 93.3
Psat5g278520 Pisum sativum HOM05D003939 ORTHO05D030477 7.3e-33 147.9 165 53.3
HPP92_012255 Vanilla planifolia HOM05D003939 ORTHO05D005979 6.2e-32 144.8 435 30.8
CSS0004390 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 2.0e-30 139.8 270 40.4
Cpa.g.c43937 Carica papaya HOM05D003939 ORTHO05D005979 6.4e-29 134.8 70 92.9
Psat3g154360 Pisum sativum HOM05D003939 ORTHO05D030477 5.1e-26 125.2 94 70.2
MBI06_g03947_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D013368 6.6e-26 124.8 127 56.7
MELO3C001721.2 Cucumis melo HOM05D003939 ORTHO05D005979 1.1e-25 124.0 61 100.0
Psat3g154320 Pisum sativum HOM05D003939 ORTHO05D030477 3.3e-25 122.5 95 68.4
Glyma.01G130950 Glycine max HOM05D003939 ORTHO05D005979 2.4e-23 116.3 99 60.6
C09p61570 Brassica napus HOM05D003939 ORTHO05D005979 1.4e-20 107.1 84 65.5
arahy.Tifrunner.gnm1.ann1.HI697U Arachis hypogaea HOM05D001278 ORTHO05D005979 7.1e-20 104.8 88 59.1
TPR.G3973 Trifolium pratense HOM05D003939 ORTHO05D005979 3.0e-18 99.4 197 34.5
Hma1.2p1_0481F.1_g162040 Hydrangea macrophylla HOM05D003939 ORTHO05D013368 1.3e-16 94.0 71 67.6
arahy.Tifrunner.gnm1.ann1.BV8AZF Arachis hypogaea HOM05D001278 ORTHO05D004786 2.8e-16 92.8 72 61.1
MBI19_g03794_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D013368 2.8e-16 92.8 200 38.5
TAR376G0271 Trochodendron aralioides HOM05D003939 ORTHO05D009412 2.4e-15 89.7 48 87.5
Solyc03g059400.1 Solanum lycopersicum HOM05D003939 ORTHO05D013368 5.3e-15 88.6 81 58.0
TAR376G0356 Trochodendron aralioides HOM05D003939 ORTHO05D009412 6.9e-15 88.2 48 85.4
TAR629G0495 Trochodendron aralioides HOM05D003939 ORTHO05D005979 9.0e-15 87.8 59 72.9
CAN.G61.23 Capsicum annuum HOM05D003939 ORTHO05D005979 1.5e-14 87.0 70 65.7
C09p61560 Brassica napus HOM05D003939 ORTHO05D013368 3.4e-14 85.9 127 42.5
Atru.chr8.420 Acer truncatum HOM05D003939 ORTHO05D013368 2.2e-13 83.2 91 56.0
Nitab4.5_0002960g0020 Nicotiana tabacum HOM05D003939 ORTHO05D013368 6.4e-13 81.6 79 57.0
Nitab4.5_0001637g0020 Nicotiana tabacum HOM05D003939 ORTHO05D013368 4.2e-12 79.0 79 55.7
SEGI_31617 Sequoiadendron giganteum HOM05D003939 ORTHO05D050928 1.0e-10 74.3 259 27.8
TAR629G2192 Trochodendron aralioides HOM05D003939 ORTHO05D013368 2.3e-10 73.2 90 47.8
Psat5g164760 Pisum sativum HOM05D003939 ORTHO05D005979 5.1e-10 72.0 53 64.2
PSO063G0192 Papaver somniferum HOM05D001862 ORTHO05D005979 1.1e-09 70.9 100 46.0
SEGI_38119 Sequoiadendron giganteum HOM05D003939 ORTHO05D050928 1.4e-07 63.9 151 27.2
EL10Ac2g03124 Beta vulgaris HOM05D005544 ORTHO05D007303 5.3e-07 62.0 139 31.7
ATR0035G002 Amborella trichopoda HOM05D003939 ORTHO05D013368 9.0e-07 61.2 72 47.2
ATR1045G001 Amborella trichopoda HOM05D003939 ORTHO05D013368 9.0e-07 61.2 72 47.2
PSO013G0049 Papaver somniferum HOM05D003939 ORTHO05D013368 9.0e-07 61.2 75 42.7
ATR0064G012 Amborella trichopoda HOM05D003939 ORTHO05D013368 3.4e-06 59.3 72 45.8
BolC9t58995H Brassica oleracea HOM05D003939 ORTHO05D013368 4.5e-06 58.9 94 42.6


User provided reference genes

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