Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C011841.2 Cucumis melo HOM05D002001 ORTHO05D004100 2.9e-51 204.9 101 100.0
MELO3C027046.2 Cucumis melo HOM05D002001 ORTHO05D004100 3.8e-51 204.5 100 100.0
ClCG11G013430 Citrullus lanatus HOM05D002001 ORTHO05D004100 8.7e-40 166.8 84 94.0
Sed0012035 Sechium edule HOM05D002001 ORTHO05D004100 1.1e-39 166.4 84 94.0
CsaV3_5G029960 Cucumis sativus L. HOM05D002001 ORTHO05D004100 1.9e-39 165.6 84 94.0
TAR629G1401 Trochodendron aralioides HOM05D002001 ORTHO05D004100 1.5e-36 156.0 84 86.9
CSS0047146 Camellia sinensis var. sinensis HOM05D002001 ORTHO05D004100 4.5e-36 154.5 85 88.2
Ciclev10000468m.g Citrus clementina HOM05D002001 ORTHO05D004100 5.9e-36 154.1 84 85.7
COL.COLO4_11757 Corchorus olitorius HOM05D002001 ORTHO05D004100 1.3e-35 152.9 84 84.5
Ah.02g126190 Amaranthus hybridus HOM05D002001 ORTHO05D004100 1.7e-35 152.5 85 84.7
Duzib052G0396 Durio zibethinus HOM05D002001 ORTHO05D004100 1.7e-35 152.5 84 85.7
TAR629G1852 Trochodendron aralioides HOM05D002001 ORTHO05D004100 2.2e-35 152.1 84 85.7
Actinidia06465 Actinidia chinensis HOM05D002001 ORTHO05D004100 6.5e-35 150.6 85 84.7
Eucgr.G00400 Eucalyptus grandis HOM05D002001 ORTHO05D004100 6.5e-35 150.6 84 84.5
Ah.01g004900 Amaranthus hybridus HOM05D002001 ORTHO05D004100 8.4e-35 150.2 84 84.5
CiPaw.06G144700 Carya illinoinensis HOM05D002001 ORTHO05D004100 8.4e-35 150.2 84 84.5
AUR62011671 Chenopodium quinoa HOM05D002001 ORTHO05D004100 8.4e-35 150.2 85 84.7
AUR62016494 Chenopodium quinoa HOM05D002001 ORTHO05D004100 8.4e-35 150.2 85 84.7
Gohir.D13G034600 Gossypium hirsutum HOM05D002001 ORTHO05D004100 1.1e-34 149.8 84 83.3
Gorai.013G039200 Gossypium raimondii HOM05D002001 ORTHO05D004100 1.1e-34 149.8 84 83.3
Prupe.I006100 Prunus persica HOM05D002001 ORTHO05D004100 1.1e-34 149.8 84 83.3
QL02p098463 Quercus lobata HOM05D002001 ORTHO05D004100 1.1e-34 149.8 84 83.3
MBI04_g30788_MAGBIO Magnolia biondii HOM05D002001 ORTHO05D004100 1.9e-34 149.1 85 83.5
MBI04_g30789_MAGBIO Magnolia biondii HOM05D002001 ORTHO05D004100 1.9e-34 149.1 85 83.5
Eucgr.G00401 Eucalyptus grandis HOM05D002001 ORTHO05D004100 2.5e-34 148.7 84 83.3
Gohir.A13G036300 Gossypium hirsutum HOM05D002001 ORTHO05D004100 2.5e-34 148.7 84 82.1
QL02p099792 Quercus lobata HOM05D002001 ORTHO05D004100 3.2e-34 148.3 84 82.1
GSVIVG01023351001 Vitis vinifera HOM05D002001 ORTHO05D004100 3.2e-34 148.3 84 82.1
EL10Ac9g22038 Beta vulgaris HOM05D002001 ORTHO05D004100 4.2e-34 147.9 86 82.6
CDE01G0324 Ceratophyllum demersum HOM05D002001 ORTHO05D004100 4.2e-34 147.9 84 82.1
CDE12G0623 Ceratophyllum demersum HOM05D002001 ORTHO05D004100 4.2e-34 147.9 84 81.0
Duzib132G0735 Durio zibethinus HOM05D002001 ORTHO05D004100 4.2e-34 147.9 84 83.3
Dinv01850 Davidia involucrata HOM05D002001 ORTHO05D004100 5.5e-34 147.5 85 82.4
Dinv24311 Davidia involucrata HOM05D002001 ORTHO05D004100 5.5e-34 147.5 85 82.4
Manes.10G123600 Manihot esculenta HOM05D002001 ORTHO05D004100 5.5e-34 147.5 84 83.3
ATR0568G050 Amborella trichopoda HOM05D002001 ORTHO05D004100 7.2e-34 147.1 84 82.1
Eucgr.G00404 Eucalyptus grandis HOM05D002001 ORTHO05D004100 7.2e-34 147.1 84 82.1
Actinidia26158 Actinidia chinensis HOM05D002001 ORTHO05D004100 9.3e-34 146.7 85 81.2
Thecc.02G090300 Theobroma cacao HOM05D002001 ORTHO05D004100 1.6e-33 146.0 84 82.1
Ciclev10000467m.g Citrus clementina HOM05D002001 ORTHO05D004100 2.1e-33 145.6 84 79.8
CANSAT11G0528 Cannabis sativa HOM05D002001 ORTHO05D004100 6.1e-33 144.1 83 79.5
Lj5A255T82 Lonicera japonica HOM05D002001 ORTHO05D004100 6.1e-33 144.1 85 81.2
vmacro19878 Vaccinium macrocarpon HOM05D002001 ORTHO05D004100 1.0e-32 143.3 86 81.4
TWI14G0623 Tripterygium wilfordii HOM05D002001 ORTHO05D004100 1.3e-32 142.9 87 81.6
MSTRG.20312 Avicennia marina HOM05D002001 ORTHO05D004100 2.3e-32 142.1 84 78.6
Nn1g09279 Nelumbo nucifera HOM05D002001 ORTHO05D004100 2.3e-32 142.1 84 78.6
Prupe.1G574800 Prunus persica HOM05D002001 ORTHO05D004100 2.3e-32 142.1 84 78.6
vmacro19877 Vaccinium macrocarpon HOM05D002001 ORTHO05D004100 2.3e-32 142.1 84 83.3
Atru.chr10.1556 Acer truncatum HOM05D002001 ORTHO05D004100 3.0e-32 141.7 81 82.7
Cc02_g22840 Coffea canephora HOM05D002001 ORTHO05D004100 3.0e-32 141.7 87 82.8
DCAR_006689 Daucus carota HOM05D002001 ORTHO05D004100 3.0e-32 141.7 85 80.0
MD15G1429300 Malus domestica HOM05D002001 ORTHO05D004100 3.9e-32 141.4 89 76.4
HPP92_015169 Vanilla planifolia HOM05D002001 ORTHO05D004100 3.9e-32 141.4 80 80.0
Potri.017G076000 Populus trichocarpa HOM05D002001 ORTHO05D004100 5.1e-32 141.0 85 80.0
Rhsim10G0102800 Rhododendron simsii HOM05D002001 ORTHO05D004100 6.7e-32 140.6 86 80.2
Sabra17G0068100 Salix brachista HOM05D002001 ORTHO05D004100 6.7e-32 140.6 83 80.7
ATR0568G179 Amborella trichopoda HOM05D002001 ORTHO05D004100 8.7e-32 140.2 84 78.6
Haze_01809 Corylus avellana HOM05D002001 ORTHO05D004100 8.7e-32 140.2 84 79.8
Nitab4.5_0007277g0010 Nicotiana tabacum HOM05D002001 ORTHO05D004100 8.7e-32 140.2 85 80.0
Os03g0852900 Oryza sativa ssp. japonica HOM05D002001 ORTHO05D004100 8.7e-32 140.2 82 82.9
PGR042G3798 Punica granatum HOM05D002001 ORTHO05D004100 1.5e-31 139.4 84 77.4
MD08G1237400 Malus domestica HOM05D002001 ORTHO05D004100 1.9e-31 139.0 88 75.0
Nitab4.5_0000667g0210 Nicotiana tabacum HOM05D002001 ORTHO05D004100 1.9e-31 139.0 85 80.0
GSVIVG01023380001 Vitis vinifera HOM05D002001 ORTHO05D004100 1.9e-31 139.0 84 79.8
Migut.B00809 Erythranthe guttata HOM05D002001 ORTHO05D004100 2.5e-31 138.7 84 76.2
Lj6g0014440 Lotus japonicus HOM05D002001 ORTHO05D004100 2.5e-31 138.7 79 83.5
Oeu034119.1 Olea europaea HOM05D002001 ORTHO05D004100 2.5e-31 138.7 84 79.8
Oeu064618.2 Olea europaea HOM05D002001 ORTHO05D004100 2.5e-31 138.7 84 79.8
Sabra17G0068000 Salix brachista HOM05D002001 ORTHO05D004100 2.5e-31 138.7 85 80.0
Phvul.006G217100 Phaseolus vulgaris HOM05D002001 ORTHO05D004100 3.3e-31 138.3 68 92.6
TPR.G35593 Trifolium pratense HOM05D002001 ORTHO05D004100 4.3e-31 137.9 79 82.3
GSVIVG01023373001 Vitis vinifera HOM05D002001 ORTHO05D004100 5.7e-31 137.5 84 79.8
CARHR052150 Cardamine hirsuta HOM05D002001 ORTHO05D004100 9.7e-31 136.7 76 82.9
Sp2g03500 Schrenkiella parvula HOM05D002001 ORTHO05D004100 1.3e-30 136.3 76 81.6
Atru.chr10.1555 Acer truncatum HOM05D002001 ORTHO05D004100 1.6e-30 136.0 82 81.7
Atru.chr6.693 Acer truncatum HOM05D002001 ORTHO05D004100 1.6e-30 136.0 86 76.7
Psat3g090080 Pisum sativum HOM05D002001 ORTHO05D004100 1.6e-30 136.0 80 83.8
THA.LOC104819173 Tarenaya hassleriana HOM05D002001 ORTHO05D004100 1.6e-30 136.0 76 82.9
arahy.Tifrunner.gnm1.ann1.97GRLX Arachis hypogaea HOM05D002001 ORTHO05D004100 2.2e-30 135.6 87 73.6
arahy.Tifrunner.gnm1.ann1.GST58F Arachis hypogaea HOM05D002001 ORTHO05D004100 2.2e-30 135.6 87 73.6
VMungo0540G2019 Vigna mungo HOM05D002001 ORTHO05D004100 2.2e-30 135.6 77 84.4
Ca_00055_v3 Cicer arietinum L. HOM05D002001 ORTHO05D004100 2.8e-30 135.2 69 88.4
PSO063G5226 Papaver somniferum HOM05D002001 ORTHO05D004100 2.8e-30 135.2 88 78.4
BcaB04g20308 Brassica carinata HOM05D002001 ORTHO05D004100 3.7e-30 134.8 76 81.6
Potri.017G076132 Populus trichocarpa HOM05D002001 ORTHO05D004100 3.7e-30 134.8 85 77.6
Aa31sc291G30 Aethionema arabicum HOM05D002001 ORTHO05D004100 6.3e-30 134.0 76 80.3
SGA_v2.0_scaffold92G28301 Striga asiatica HOM05D002001 ORTHO05D004100 6.3e-30 134.0 95 69.5
Carub.0002s0418 Capsella rubella HOM05D002001 ORTHO05D004100 1.1e-29 133.3 76 80.3
SEGI_21233 Sequoiadendron giganteum HOM05D002001 ORTHO05D004100 1.1e-29 133.3 74 83.8
Lj5C255T12 Lonicera japonica HOM05D002001 ORTHO05D004100 1.8e-29 132.5 65 95.4
GSVIVG01023355001 Vitis vinifera HOM05D002001 ORTHO05D004100 2.4e-29 132.1 84 75.0
AL2G15430 Arabidopsis lyrata HOM05D002001 ORTHO05D004100 3.1e-29 131.7 76 78.9
AT1G61010 Arabidopsis thaliana HOM05D002001 ORTHO05D004100 3.1e-29 131.7 76 78.9
Medtr2g006180 Medicago truncatula HOM05D002001 ORTHO05D004100 3.1e-29 131.7 80 77.5
Zm00001eb064770 Zea mays HOM05D002001 ORTHO05D004100 4.1e-29 131.3 83 74.7
BcaC09g49340 Brassica carinata HOM05D002001 ORTHO05D004100 6.9e-29 130.6 77 80.5
A01p29840 Brassica napus HOM05D002001 ORTHO05D004100 6.9e-29 130.6 77 80.5
C01p37690 Brassica napus HOM05D002001 ORTHO05D004100 6.9e-29 130.6 77 80.5
BolC1t03733H Brassica oleracea HOM05D002001 ORTHO05D004100 6.9e-29 130.6 77 80.5
BraA01t03112Z Brassica rapa HOM05D002001 ORTHO05D004100 6.9e-29 130.6 77 80.5
Lsat_1_v5_gn_7_79181 Lactuca sativa HOM05D002001 ORTHO05D004100 9.0e-29 130.2 76 77.6
Zm00001eb210600 Zea mays HOM05D002001 ORTHO05D004100 9.0e-29 130.2 83 74.7
FAN12G2583 Fragaria x ananassa HOM05D002001 ORTHO05D004100 1.2e-28 129.8 86 72.1
FvH4_4g07000 Fragaria vesca HOM05D002001 ORTHO05D004100 1.5e-28 129.4 78 75.6
FAN07G2305 Fragaria x ananassa HOM05D002001 ORTHO05D004100 1.5e-28 129.4 78 75.6
RcHm_v2.0_Chr7g0220981 Rosa chinensis HOM05D002001 ORTHO05D004100 1.5e-28 129.4 84 75.0
SalBow8G1128 Salvia bowleyana HOM05D005536 ORTHO05D004100 1.5e-28 129.4 76 76.3
FAN22G0816 Fragaria x ananassa HOM05D002001 ORTHO05D004100 2.0e-28 129.0 78 75.6
Sopen07g024830 Solanum pennellii HOM05D002001 ORTHO05D004100 2.0e-28 129.0 85 68.2
FAN03G1556 Fragaria x ananassa HOM05D002001 ORTHO05D004100 2.6e-28 128.6 83 74.7
Solyc07g049480.3 Solanum lycopersicum HOM05D002001 ORTHO05D004100 2.6e-28 128.6 85 68.2
PGSC0003DMG400000682 Solanum tuberosum HOM05D002001 ORTHO05D004100 2.6e-28 128.6 85 68.2
CAN.G529.48 Capsicum annuum HOM05D002001 ORTHO05D004100 3.4e-28 128.3 85 69.4
FAN17G1518 Fragaria x ananassa HOM05D002001 ORTHO05D004100 4.5e-28 127.9 78 74.4
Peaxi162Scf00003g03948 Petunia axillaris HOM05D002001 ORTHO05D004100 4.5e-28 127.9 66 87.9
Aqoxy7G01152 Aquilegia oxysepala HOM05D002001 ORTHO05D004100 7.7e-28 127.1 78 73.1
ECA236G3872 Erigeron canadensis HOM05D002001 ORTHO05D004100 1.0e-27 126.7 76 72.4
Lalb_Chr20g0123631 Lupinus albus HOM05D002001 ORTHO05D004100 1.7e-27 125.9 71 80.3
FAN13G2793 Fragaria x ananassa HOM05D002001 ORTHO05D004100 3.8e-27 124.8 84 71.4
AagrBONN_evm.TU.Sc2ySwM_344.449 Anthoceros agrestis HOM05D002001 ORTHO05D004100 5.0e-27 124.4 74 77.0
Aqoxy7G01153 Aquilegia oxysepala HOM05D002001 ORTHO05D004100 5.0e-27 124.4 77 72.7
FAN04G1414 Fragaria x ananassa HOM05D002001 ORTHO05D004100 5.0e-27 124.4 84 72.6
SHI08868 Sapria himalayana HOM05D002001 ORTHO05D004100 8.5e-27 123.6 84 69.0
CBR_g31441 Chara braunii HOM05D002001 ORTHO05D004100 1.1e-26 123.2 72 80.6
Mapoly0069s0028 Marchantia polymorpha HOM05D002001 ORTHO05D004100 1.1e-26 123.2 74 75.7
Pp3c6_3520 Physcomitrium patens HOM05D002001 ORTHO05D004100 2.5e-26 122.1 67 80.6
Glyma.08G188800 Glycine max HOM05D002001 ORTHO05D004100 3.2e-26 121.7 75 70.7
Pp3c5_23920 Physcomitrium patens HOM05D002001 ORTHO05D004100 5.5e-26 120.9 78 71.8
RcHm_v2.0_Chr4g0399131 Rosa chinensis HOM05D002001 ORTHO05D004100 7.9e-25 117.1 62 85.5
SMO270G0079 Selaginella moellendorffii HOM05D002001 ORTHO05D004100 7.9e-25 117.1 75 66.7
unitig_22.g6110 Utricularia gibba HOM05D002001 ORTHO05D004100 6.7e-24 114.0 73 67.1
SMO306G0001 Selaginella moellendorffii HOM05D002001 ORTHO05D004100 8.8e-24 113.6 74 64.9
HanXRQChr17g0559661 Helianthus annuus HOM05D002001 ORTHO05D004100 2.0e-23 112.5 61 78.7
Hund06801 Selenicereus undatus HOM05D002001 ORTHO05D004100 1.7e-22 109.4 54 90.7
MCO04G421 Micromonas commoda HOM05D002001 ORTHO05D004100 2.0e-20 102.4 67 64.2
AagrBONN_evm.TU.Sc2ySwM_344.452 Anthoceros agrestis HOM05D002001 ORTHO05D004100 3.4e-20 101.7 63 74.6
Oeu023418.1 Olea europaea HOM05D002001 ORTHO05D004100 4.5e-20 101.3 94 59.6
Thhalv10024010m.g Eutrema salsugineum HOM05D002001 ORTHO05D004100 2.9e-19 98.6 76 67.1
Haze_26930 Corylus avellana HOM05D002001 ORTHO05D004100 2.7e-17 92.0 65 58.5
Cfa023216 Carpinus fangiana HOM05D002001 ORTHO05D004100 4.7e-17 91.3 83 49.4
PRCOL_00001441 Prasinoderma coloniale HOM05D002001 ORTHO05D004100 4.7e-17 91.3 70 57.1
Cre12.g498050 Chlamydomonas reinhardtii HOM05D002001 ORTHO05D004100 1.5e-15 86.3 59 62.7
CiPaw.08G110700 Carya illinoinensis HOM05D002001 ORTHO05D004100 2.2e-14 82.4 42 90.5
Prupe.1G574900 Prunus persica HOM05D002001 ORTHO05D004100 2.2e-14 82.4 52 73.1
FvH4_5g28771 Fragaria vesca HOM05D002001 ORTHO05D004100 1.1e-13 80.1 48 77.1
Rhsim10G0102700 Rhododendron simsii HOM05D002001 ORTHO05D004100 3.5e-12 75.1 48 70.8
MBI03_g28527_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.5e-10 69.7 33 90.9
CiPaw.06G144400 Carya illinoinensis HOM05D002001 ORTHO05D004100 1.9e-10 69.3 84 48.8
Ciclev10014563m.g Citrus clementina HOM05D002001 ORTHO05D006833 9.7e-07 57.0 61 44.3
Ca_12538_v3 Cicer arietinum L. HOM05D002001 ORTHO05D006833 3.7e-06 55.1 61 41.0
MBI19_g34072_MAGBIO Magnolia biondii HOM05D002001 ORTHO05D006833 3.7e-06 55.1 49 49.0
TPR.G36871 Trifolium pratense HOM05D002001 ORTHO05D006833 3.7e-06 55.1 61 41.0
FAN07G1867 Fragaria x ananassa HOM05D002001 ORTHO05D006833 4.8e-06 54.7 56 41.1
FAN17G2388 Fragaria x ananassa HOM05D002001 ORTHO05D006833 4.8e-06 54.7 56 41.1
FvH4_4g33520 Fragaria vesca HOM05D002001 ORTHO05D006833 6.3e-06 54.3 56 41.1
Pp3c5_16690 Physcomitrium patens HOM05D002001 ORTHO05D006833 6.3e-06 54.3 62 40.3
FAN18G1953 Fragaria x ananassa HOM05D000315 ORTHO05D004100 8.2e-06 53.9 79 41.8
Manes.17G084001 Manihot esculenta HOM05D002001 ORTHO05D006833 8.2e-06 53.9 61 41.0
Phvul.003G018200 Phaseolus vulgaris HOM05D002001 ORTHO05D006833 8.2e-06 53.9 61 41.0
VMungo0720G0546 Vigna mungo HOM05D002001 ORTHO05D006833 8.2e-06 53.9 61 41.0


User provided reference genes

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