Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G015080 Citrullus lanatus HOM05D005935 ORTHO05D007012 1.2e-91 340.1 203 100.0
MELO3C004198.2 Cucumis melo HOM05D005935 ORTHO05D007012 1.2e-91 340.1 203 100.0
CsaV3_2G006940 Cucumis sativus L. HOM05D005935 ORTHO05D007012 5.7e-91 337.8 203 99.0
Sed0001365 Sechium edule HOM05D005935 ORTHO05D007012 5.0e-87 324.7 203 94.6
Eucgr.H03282 Eucalyptus grandis HOM05D005935 ORTHO05D007012 2.3e-79 299.3 204 89.2
GSVIVG01031220001 Vitis vinifera HOM05D005935 ORTHO05D007012 3.9e-79 298.5 205 87.3
CiPaw.07G028100 Carya illinoinensis HOM05D005935 ORTHO05D007012 1.9e-78 296.2 204 87.7
SGA_v2.0_scaffold81G26126 Striga asiatica HOM05D005935 ORTHO05D007012 1.2e-77 293.5 204 87.7
Manes.09G175700 Manihot esculenta HOM05D005935 ORTHO05D007012 2.1e-77 292.7 201 90.0
Atru.chr2.148 Acer truncatum HOM05D005935 ORTHO05D007012 2.8e-77 292.4 205 85.4
Ah.06g188880 Amaranthus hybridus HOM05D005935 ORTHO05D007012 2.8e-77 292.4 204 85.8
MSTRG.27950 Avicennia marina HOM05D005935 ORTHO05D007012 2.8e-77 292.4 204 87.3
SGA_v2.0_scaffold80G25879 Striga asiatica HOM05D005935 ORTHO05D007012 1.1e-76 290.4 204 85.8
Cc02_g34830 Coffea canephora HOM05D005935 ORTHO05D007012 2.3e-76 289.3 203 84.2
Haze_04079 Corylus avellana HOM05D005935 ORTHO05D007012 1.2e-75 287.0 196 90.3
Phvul.001G225500 Phaseolus vulgaris HOM05D005935 ORTHO05D007012 1.5e-75 286.6 204 86.3
SalBow3G1520 Salvia bowleyana HOM05D005935 ORTHO05D007012 1.5e-75 286.6 203 84.2
Dinv24425 Davidia involucrata HOM05D005935 ORTHO05D007012 3.4e-75 285.4 205 85.9
Glyma.19G228900 Glycine max HOM05D005935 ORTHO05D007012 3.4e-75 285.4 203 85.7
MD04G1195100 Malus domestica HOM05D005935 ORTHO05D007012 3.4e-75 285.4 201 87.6
TAR362G1094 Trochodendron aralioides HOM05D005935 ORTHO05D007012 3.4e-75 285.4 205 85.4
EL10Ac4g09829 Beta vulgaris HOM05D005935 ORTHO05D007012 5.8e-75 284.6 205 85.4
Prupe.6G314900 Prunus persica HOM05D005935 ORTHO05D007012 5.8e-75 284.6 204 86.8
PGR031G1309 Punica granatum HOM05D005935 ORTHO05D007012 7.5e-75 284.3 199 85.4
Os03g0831900 Oryza sativa ssp. japonica HOM05D005935 ORTHO05D007012 2.2e-74 282.7 202 83.7
Cpa.g.sc48.144 Carica papaya HOM05D005935 ORTHO05D007012 6.4e-74 281.2 200 87.0
Lsat_1_v5_gn_5_102820 Lactuca sativa HOM05D005935 ORTHO05D007012 6.4e-74 281.2 203 84.2
Hma1.2p1_0008F-1.1_g005750 Hydrangea macrophylla HOM05D005935 ORTHO05D007012 8.3e-74 280.8 204 85.8
unitig_21.g20172 Utricularia gibba HOM05D005935 ORTHO05D007012 1.1e-73 280.4 204 84.8
arahy.Tifrunner.gnm1.ann1.7UDZ1N Arachis hypogaea HOM05D005935 ORTHO05D007012 1.4e-73 280.0 204 82.4
arahy.Tifrunner.gnm1.ann1.G5WI6L Arachis hypogaea HOM05D005935 ORTHO05D007012 4.1e-73 278.5 204 83.8
arahy.Tifrunner.gnm1.ann1.H1X696 Arachis hypogaea HOM05D005935 ORTHO05D007012 4.1e-73 278.5 204 83.8
Sopen01g043840 Solanum pennellii HOM05D005935 ORTHO05D007012 7.1e-73 277.7 203 81.3
Thecc.05G321000 Theobroma cacao HOM05D005935 ORTHO05D007012 7.1e-73 277.7 201 85.1
COL.COLO4_04140 Corchorus olitorius HOM05D005935 ORTHO05D007012 9.2e-73 277.3 201 84.6
Lj1g0021681 Lotus japonicus HOM05D005935 ORTHO05D007012 9.2e-73 277.3 200 85.5
Sc09g0002670 Simmondsia chinensis HOM05D005935 ORTHO05D007012 9.2e-73 277.3 204 84.8
TAR636G0846 Trochodendron aralioides HOM05D005935 ORTHO05D007012 9.2e-73 277.3 204 84.3
arahy.Tifrunner.gnm1.ann1.I9BDFC Arachis hypogaea HOM05D005935 ORTHO05D007012 1.2e-72 276.9 204 82.8
BraA05t22944Z Brassica rapa HOM05D002110 ORTHO05D007012 1.2e-72 276.9 199 81.4
CAN.G1715.16 Capsicum annuum HOM05D005935 ORTHO05D007012 1.2e-72 276.9 203 82.8
Glyma.03G231900 Glycine max HOM05D005935 ORTHO05D007012 1.2e-72 276.9 203 84.2
Ca_09298_v3 Cicer arietinum L. HOM05D005935 ORTHO05D007012 1.6e-72 276.6 203 83.7
MD12G1207200 Malus domestica HOM05D005935 ORTHO05D007012 1.6e-72 276.6 200 86.0
Solyc01g100330.3 Solanum lycopersicum HOM05D005935 ORTHO05D007012 1.6e-72 276.6 203 80.8
PGSC0003DMG400002806 Solanum tuberosum HOM05D005935 ORTHO05D007012 1.6e-72 276.6 203 80.8
FvH4_6g07240 Fragaria vesca HOM05D005935 ORTHO05D007012 2.7e-72 275.8 200 87.0
BcaC05g30089 Brassica carinata HOM05D005935 ORTHO05D007012 4.6e-72 275.0 199 79.9
Gohir.D08G223300 Gossypium hirsutum HOM05D005935 ORTHO05D007012 4.6e-72 275.0 200 85.5
Gorai.004G237200 Gossypium raimondii HOM05D005935 ORTHO05D007012 4.6e-72 275.0 200 85.5
ATR0767G209 Amborella trichopoda HOM05D005935 ORTHO05D007012 6.0e-72 274.6 204 81.9
Gohir.A08G206600 Gossypium hirsutum HOM05D005935 ORTHO05D007012 6.0e-72 274.6 204 85.3
Migut.N01391 Erythranthe guttata HOM05D005935 ORTHO05D007012 1.0e-71 273.9 205 82.9
BolC5t34806H Brassica oleracea HOM05D002110 ORTHO05D007012 1.3e-71 273.5 197 79.7
CDE11G0767 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 1.3e-71 273.5 204 84.8
CDE05G0147 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 1.7e-71 273.1 204 84.8
RcHm_v2.0_Chr3g0456881 Rosa chinensis HOM05D005935 ORTHO05D007012 1.7e-71 273.1 200 85.0
Nn3g21642 Nelumbo nucifera HOM05D005935 ORTHO05D007012 2.3e-71 272.7 204 83.8
Aqoxy2G00839 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 3.0e-71 272.3 205 84.9
C05p61480 Brassica napus HOM05D002110 ORTHO05D007012 3.0e-71 272.3 200 83.0
Zm00001eb121760 Zea mays HOM05D005935 ORTHO05D007012 3.0e-71 272.3 201 80.1
Actinidia16851 Actinidia chinensis HOM05D005935 ORTHO05D007012 6.6e-71 271.2 195 86.2
Lalb_Chr18g0046051 Lupinus albus HOM05D005935 ORTHO05D007012 8.6e-71 270.8 205 82.0
Sp3g04650 Schrenkiella parvula HOM05D005935 ORTHO05D007012 1.1e-70 270.4 199 79.9
VMungo1383G1193 Vigna mungo HOM05D005935 ORTHO05D007012 1.1e-70 270.4 196 85.2
CARHR080230 Cardamine hirsuta HOM05D005935 ORTHO05D007012 1.5e-70 270.0 200 83.5
SEGI_34613 Sequoiadendron giganteum HOM05D005935 ORTHO05D007012 1.5e-70 270.0 204 79.4
Medtr7g112060 Medicago truncatula HOM05D005935 ORTHO05D007012 1.9e-70 269.6 199 82.9
QL03p018299 Quercus lobata HOM05D005935 ORTHO05D007012 1.9e-70 269.6 203 80.8
THA.LOC104802776 Tarenaya hassleriana HOM05D005935 ORTHO05D007012 1.9e-70 269.6 199 79.9
FAN05G5324 Fragaria x ananassa HOM05D005935 ORTHO05D007012 2.5e-70 269.2 209 82.3
HanXRQChr10g0299201 Helianthus annuus HOM05D005935 ORTHO05D007012 2.5e-70 269.2 199 85.4
FAN14G3557 Fragaria x ananassa HOM05D005935 ORTHO05D007012 3.3e-70 268.9 209 82.3
Peaxi162Scf00673g00126 Petunia axillaris HOM05D005935 ORTHO05D007012 3.3e-70 268.9 201 81.6
FAN02G1619 Fragaria x ananassa HOM05D005935 ORTHO05D007012 7.3e-70 267.7 209 81.8
Lalb_Chr04g0260471 Lupinus albus HOM05D005935 ORTHO05D007012 9.5e-70 267.3 205 75.1
Aqoxy4G02482 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 2.8e-69 265.8 205 82.9
CANSAT54G1507 Cannabis sativa HOM05D005935 ORTHO05D007012 3.6e-69 265.4 206 81.1
Carub.0003s0513 Capsella rubella HOM05D005935 ORTHO05D007012 3.6e-69 265.4 199 78.9
TWI56G1463 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 3.6e-69 265.4 201 84.1
vmacro01555 Vaccinium macrocarpon HOM05D005935 ORTHO05D007012 4.7e-69 265.0 247 70.9
BcaC05g29782 Brassica carinata HOM05D005935 ORTHO05D007012 6.2e-69 264.6 199 78.4
TWI36G1229 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 1.1e-68 263.8 201 83.1
AUR62000683 Chenopodium quinoa HOM05D005935 ORTHO05D007012 2.3e-68 262.7 204 77.9
AT3G05760 Arabidopsis thaliana HOM05D005935 ORTHO05D007012 4.0e-68 261.9 199 78.4
AL3G16500 Arabidopsis lyrata HOM05D005935 ORTHO05D007012 1.2e-67 260.4 199 77.4
Ciclev10002528m.g Citrus clementina HOM05D005935 ORTHO05D007012 1.2e-67 260.4 200 82.5
QL01p019294 Quercus lobata HOM05D005935 ORTHO05D007012 1.2e-67 260.4 199 81.9
ECA234G4853 Erigeron canadensis HOM05D005935 ORTHO05D007012 2.0e-67 259.6 198 80.8
PSO170G3047 Papaver somniferum HOM05D005935 ORTHO05D007012 3.4e-67 258.8 200 83.0
PSO357G0321 Papaver somniferum HOM05D005935 ORTHO05D007012 3.4e-67 258.8 200 83.0
Potri.013G010300 Populus trichocarpa HOM05D005935 ORTHO05D007012 8.4e-66 254.2 199 81.4
Psat3g013040 Pisum sativum HOM05D005935 ORTHO05D007012 3.2e-65 252.3 198 78.3
Nitab4.5_0013342g0020 Nicotiana tabacum HOM05D000001 ORTHO05D004269 5.4e-65 251.5 207 77.3
Nitab4.5_0000155g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 2.7e-64 249.2 203 75.9
HPP92_015241 Vanilla planifolia HOM05D005935 ORTHO05D007012 1.0e-63 247.3 195 82.1
Duzib128G1094 Durio zibethinus HOM05D005935 ORTHO05D007012 1.7e-63 246.5 153 84.3
PSO478G5244 Papaver somniferum HOM05D005935 ORTHO05D007012 3.0e-63 245.7 204 78.4
Pp3c4_20180 Physcomitrium patens HOM05D005935 ORTHO05D007012 8.6e-63 244.2 202 77.2
TPR.G1633 Trifolium pratense HOM05D005935 ORTHO05D007012 1.5e-62 243.4 198 76.8
FAN09G4449 Fragaria x ananassa HOM05D005935 ORTHO05D007012 1.9e-62 243.0 156 84.6
Thhalv10022198m.g Eutrema salsugineum HOM05D005935 ORTHO05D007012 5.6e-62 241.5 275 59.6
Aa31LG5G16170 Aethionema arabicum HOM05D005935 ORTHO05D007012 7.3e-62 241.1 211 64.0
DCAR_005416 Daucus carota HOM05D005935 ORTHO05D007012 2.1e-61 239.6 170 86.5
Mapoly0111s0002 Marchantia polymorpha HOM05D005935 ORTHO05D007012 1.1e-60 237.3 205 71.2
CSS0047945 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 5.2e-60 235.0 160 90.6
AUR62005273 Chenopodium quinoa HOM05D005935 ORTHO05D007012 9.9e-59 230.7 198 74.7
AagrBONN_evm.TU.Sc2ySwM_344.1201 Anthoceros agrestis HOM05D005935 ORTHO05D007012 8.4e-58 227.6 149 75.8
Hund07136 Selenicereus undatus HOM05D005935 ORTHO05D007012 4.2e-57 225.3 295 55.6
AagrBONN_evm.TU.Sc2ySwM_228.1845 Anthoceros agrestis HOM05D005935 ORTHO05D007012 8.7e-55 217.6 144 74.3
AagrBONN_evm.TU.Sc2ySwM_368.1862 Anthoceros agrestis HOM05D005935 ORTHO05D007012 9.6e-54 214.2 141 76.6
Hund21747 Selenicereus undatus HOM05D005935 ORTHO05D007012 1.3e-53 213.8 203 70.4
Nitab4.5_0000368g0260 Nicotiana tabacum HOM05D005935 ORTHO05D007012 1.1e-52 210.7 204 65.7
CSS0009551 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 1.4e-52 210.3 196 75.5
SMO201G0167 Selaginella moellendorffii HOM05D005935 ORTHO05D007012 2.0e-51 206.5 204 65.2
Rhsim11G0094200 Rhododendron simsii HOM05D005935 ORTHO05D007012 2.6e-51 206.1 204 60.3
Lj5A336T44 Lonicera japonica HOM05D005935 ORTHO05D007012 1.2e-48 197.2 110 88.2
Oeu013219.2 Olea europaea HOM05D005935 ORTHO05D007012 2.1e-48 196.4 223 65.0
Pp3c12_7700 Physcomitrium patens HOM05D005935 ORTHO05D007012 8.1e-45 184.5 159 76.7
CSS0024691 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 2.0e-43 179.9 145 71.7
RcHm_v2.0_Chr7g0179971 Rosa chinensis HOM05D005935 ORTHO05D007012 4.2e-41 172.2 144 65.3
CSS0034550 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 3.0e-39 166.0 211 64.0
CSS0031844 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 3.3e-38 162.5 125 73.6
Nitab4.5_0007747g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 3.7e-37 159.1 123 83.7
Sabra13G0008800 Salix brachista HOM05D005935 ORTHO05D007012 3.7e-37 159.1 222 45.9
Actinidia35528 Actinidia chinensis HOM05D005935 ORTHO05D007012 1.4e-36 157.1 284 49.6
CBR_g38440 Chara braunii HOM05D005935 ORTHO05D007012 5.5e-33 145.2 200 46.0
Cre07.g341650 Chlamydomonas reinhardtii HOM05D005935 ORTHO05D007012 2.3e-31 139.8 228 50.4
FAN04G2955 Fragaria x ananassa HOM05D005935 ORTHO05D007012 7.9e-24 114.8 154 48.1
MCO03G264 Micromonas commoda HOM05D005935 ORTHO05D007012 3.0e-23 112.8 213 44.6
Zm00001eb307900 Zea mays HOM05D005935 ORTHO05D007012 3.8e-18 95.9 96 76.0
Zm00001eb114570 Zea mays HOM05D005935 ORTHO05D007012 2.7e-16 89.7 91 76.9
PRCOL_00000245 Prasinoderma coloniale HOM05D005935 ORTHO05D007012 6.1e-16 88.6 211 37.4
Zm00001eb180860 Zea mays HOM05D005935 ORTHO05D007012 6.9e-12 75.1 46 82.6
Cfa024511 Carpinus fangiana HOM05D005935 ORTHO05D007012 2.5e-09 66.6 162 27.2


User provided reference genes

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