Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C000805.2 Cucumis melo HOM05D003939 ORTHO05D005979 1.3e-39 166.0 88 100.0
CsaV3_4G008740 Cucumis sativus L. HOM05D003939 ORTHO05D005979 8.7e-36 153.3 90 92.2
MELO3C016065.2 Cucumis melo HOM05D003939 ORTHO05D005979 1.9e-35 152.1 90 93.3
ClCG07G007360 Citrullus lanatus HOM05D003939 ORTHO05D005979 4.8e-34 147.5 90 88.9
Sed0008583 Sechium edule HOM05D003939 ORTHO05D005979 1.6e-29 132.5 90 77.8
Sabra17G0081700 Salix brachista HOM05D003939 ORTHO05D005979 3.4e-24 114.8 89 68.5
Lalb_Chr06g0175001 Lupinus albus HOM05D003939 ORTHO05D005979 4.5e-24 114.4 90 67.8
TAR371G0557 Trochodendron aralioides HOM05D003939 ORTHO05D005979 4.5e-24 114.4 90 67.8
Manes.01G097400 Manihot esculenta HOM05D003939 ORTHO05D005979 7.6e-24 113.6 90 66.7
Potri.017G092600 Populus trichocarpa HOM05D003939 ORTHO05D005979 7.6e-24 113.6 90 67.8
CSS0011135 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 1.0e-23 113.2 92 66.3
Gohir.A09G010200 Gossypium hirsutum HOM05D003939 ORTHO05D005979 1.3e-23 112.8 85 63.5
Eucgr.J01370 Eucalyptus grandis HOM05D003939 ORTHO05D005979 1.7e-23 112.5 90 66.7
QL02p067905 Quercus lobata HOM05D003939 ORTHO05D005979 1.7e-23 112.5 90 62.2
DCAR_025422 Daucus carota HOM05D003939 ORTHO05D005979 2.9e-23 111.7 90 64.4
Dinv33821 Davidia involucrata HOM05D003939 ORTHO05D005979 8.4e-23 110.2 92 66.3
vmacro05651 Vaccinium macrocarpon HOM05D003939 ORTHO05D005979 1.1e-22 109.8 92 64.1
Nn3g17411 Nelumbo nucifera HOM05D003939 ORTHO05D005979 2.5e-22 108.6 90 63.3
Cfa007652 Carpinus fangiana HOM05D003939 ORTHO05D005979 3.2e-22 108.2 90 62.2
Haze_14442 Corylus avellana HOM05D003939 ORTHO05D005979 3.2e-22 108.2 90 62.2
PSO013G0104 Papaver somniferum HOM05D003939 ORTHO05D005979 4.2e-22 107.8 90 65.6
PGR083G1596 Punica granatum HOM05D003939 ORTHO05D005979 4.2e-22 107.8 90 63.3
GSVIVG01011514001 Vitis vinifera HOM05D003939 ORTHO05D005979 4.2e-22 107.8 90 62.2
Actinidia01988 Actinidia chinensis HOM05D003939 ORTHO05D005979 7.1e-22 107.1 92 65.2
Duzib264G0523 Durio zibethinus HOM05D003939 ORTHO05D005979 7.1e-22 107.1 90 62.2
Glyma.13G057300 Glycine max HOM05D003939 ORTHO05D005979 7.1e-22 107.1 90 61.1
Gorai.006G011000 Gossypium raimondii HOM05D003939 ORTHO05D005979 9.3e-22 106.7 90 60.0
Gohir.D09G009300 Gossypium hirsutum HOM05D003939 ORTHO05D005979 2.1e-21 105.5 90 58.9
Duzib187G1101 Durio zibethinus HOM05D003939 ORTHO05D005979 2.7e-21 105.1 92 60.9
MD17G1057600 Malus domestica HOM05D003939 ORTHO05D005979 2.7e-21 105.1 90 64.4
Prupe.3G256700 Prunus persica HOM05D003939 ORTHO05D005979 2.7e-21 105.1 90 65.6
Cc07_g03930 Coffea canephora HOM05D003939 ORTHO05D005979 3.5e-21 104.8 90 64.4
Migut.H00638 Erythranthe guttata HOM05D003939 ORTHO05D005979 3.5e-21 104.8 92 60.9
Psat0s5863g0080 Pisum sativum HOM05D003939 ORTHO05D005979 3.5e-21 104.8 90 61.1
SGA_v2.0_scaffold52G19175 Striga asiatica HOM05D003939 ORTHO05D005979 3.5e-21 104.8 92 63.0
CANSAT64G0725 Cannabis sativa HOM05D003939 ORTHO05D005979 4.6e-21 104.4 88 61.4
COL.COLO4_21400 Corchorus olitorius HOM05D003939 ORTHO05D005979 4.6e-21 104.4 90 58.9
MBI19_g03793_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D005979 4.6e-21 104.4 90 61.1
Thecc.04G092900 Theobroma cacao HOM05D003939 ORTHO05D005979 4.6e-21 104.4 90 60.0
Atru.chr8.419 Acer truncatum HOM05D003939 ORTHO05D005979 6.1e-21 104.0 92 59.8
MSTRG.3009 Avicennia marina HOM05D003939 ORTHO05D005979 6.1e-21 104.0 92 60.9
FAN02G0596 Fragaria x ananassa HOM05D003939 ORTHO05D005979 6.1e-21 104.0 90 61.1
FAN05G1397 Fragaria x ananassa HOM05D003939 ORTHO05D005979 6.1e-21 104.0 90 61.1
FAN09G4101 Fragaria x ananassa HOM05D003939 ORTHO05D005979 6.1e-21 104.0 90 61.1
MD09G1064300 Malus domestica HOM05D003939 ORTHO05D005979 6.1e-21 104.0 90 62.2
Phvul.004G035100 Phaseolus vulgaris HOM05D003939 ORTHO05D005979 6.1e-21 104.0 90 63.3
arahy.Tifrunner.gnm1.ann1.U2J8P8 Arachis hypogaea HOM05D003939 ORTHO05D005979 7.9e-21 103.6 90 58.9
Ciclev10010894m.g Citrus clementina HOM05D003939 ORTHO05D005979 7.9e-21 103.6 92 58.7
Lj2g0019419 Lotus japonicus HOM05D003939 ORTHO05D005979 1.0e-20 103.2 90 60.0
Cpa.g.sc14.167 Carica papaya HOM05D003939 ORTHO05D005979 1.3e-20 102.8 91 60.4
FvH4_6g47080 Fragaria vesca HOM05D003939 ORTHO05D005979 1.3e-20 102.8 90 60.0
Sc10g0004620 Simmondsia chinensis HOM05D003939 ORTHO05D005979 1.3e-20 102.8 90 64.4
arahy.Tifrunner.gnm1.ann1.HNPA74 Arachis hypogaea HOM05D003939 ORTHO05D005979 1.8e-20 102.4 90 58.9
Medtr6g015060 Medicago truncatula HOM05D003939 ORTHO05D005979 2.3e-20 102.1 90 61.1
VMungo0464G1977 Vigna mungo HOM05D003939 ORTHO05D005979 3.0e-20 101.7 90 62.2
Lju41A4T71 Lonicera japonica HOM05D003939 ORTHO05D005979 5.1e-20 100.9 92 58.7
PSO063G3321 Papaver somniferum HOM05D003939 ORTHO05D005979 5.1e-20 100.9 90 61.1
Aqoxy3G03594 Aquilegia oxysepala HOM05D003939 ORTHO05D005979 6.7e-20 100.5 90 58.9
Ca_04301_v3 Cicer arietinum L. HOM05D003939 ORTHO05D005979 1.1e-19 99.8 90 57.8
Psat1g067400 Pisum sativum HOM05D003939 ORTHO05D005979 1.1e-19 99.8 93 59.1
Nitab4.5_0001637g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 2.5e-19 98.6 92 64.1
RcHm_v2.0_Chr2g0166131 Rosa chinensis HOM05D003939 ORTHO05D005979 2.5e-19 98.6 90 58.9
TWI60G0125 Tripterygium wilfordii HOM05D003939 ORTHO05D005979 2.5e-19 98.6 90 67.8
Nitab4.5_0002960g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 3.3e-19 98.2 92 64.1
THA.LOC104821002 Tarenaya hassleriana HOM05D003939 ORTHO05D005979 4.3e-19 97.8 90 58.9
Carub.0006s1371 Capsella rubella HOM05D003939 ORTHO05D005979 5.7e-19 97.4 90 54.4
Solyc03g059420.4 Solanum lycopersicum HOM05D003939 ORTHO05D005979 5.7e-19 97.4 91 60.4
Sopen03g014250 Solanum pennellii HOM05D003939 ORTHO05D005979 5.7e-19 97.4 91 60.4
AL6G26400 Arabidopsis lyrata HOM05D003939 ORTHO05D005979 7.4e-19 97.1 90 53.3
AT5G15540 Arabidopsis thaliana HOM05D003939 ORTHO05D005979 7.4e-19 97.1 90 53.3
C02p07770 Brassica napus HOM05D003939 ORTHO05D005979 1.6e-18 95.9 90 52.2
BolC2t06707H Brassica oleracea HOM05D003939 ORTHO05D005979 1.6e-18 95.9 90 52.2
Peaxi162Scf00451g00326 Petunia axillaris HOM05D003939 ORTHO05D005979 2.2e-18 95.5 91 59.3
CAN.G381.1 Capsicum annuum HOM05D003939 ORTHO05D005979 3.7e-18 94.7 91 58.2
Sp6g28560 Schrenkiella parvula HOM05D003939 ORTHO05D005979 4.8e-18 94.4 90 52.2
Hund13156 Selenicereus undatus HOM05D003939 ORTHO05D005979 8.2e-18 93.6 88 62.5
A02p03080 Brassica napus HOM05D003939 ORTHO05D005979 1.4e-17 92.8 90 51.1
BraA02t05278Z Brassica rapa HOM05D003939 ORTHO05D005979 1.4e-17 92.8 90 51.1
Thhalv10012417m.g Eutrema salsugineum HOM05D003939 ORTHO05D005979 1.4e-17 92.8 90 51.1
SHI25772 Sapria himalayana HOM05D003939 ORTHO05D005979 1.4e-17 92.8 91 54.9
Ah.10g032070 Amaranthus hybridus HOM05D003939 ORTHO05D005979 3.1e-17 91.7 90 58.9
A10p23410 Brassica napus HOM05D003939 ORTHO05D005979 3.1e-17 91.7 90 51.1
C09p61660 Brassica napus HOM05D003939 ORTHO05D005979 3.1e-17 91.7 90 51.1
BolC9t59004H Brassica oleracea HOM05D003939 ORTHO05D005979 3.1e-17 91.7 90 51.1
BraA10t44409Z Brassica rapa HOM05D003939 ORTHO05D005979 3.1e-17 91.7 90 51.1
AUR62018173 Chenopodium quinoa HOM05D003939 ORTHO05D005979 3.1e-17 91.7 88 58.0
AUR62042423 Chenopodium quinoa HOM05D003939 ORTHO05D005979 5.3e-17 90.9 88 59.1
HanXRQChr17g0546541 Helianthus annuus HOM05D003939 ORTHO05D005979 5.3e-17 90.9 93 57.0
TPR.G10018 Trifolium pratense HOM05D003939 ORTHO05D005979 6.9e-17 90.5 90 54.4
ECA246G3607 Erigeron canadensis HOM05D003939 ORTHO05D005979 9.0e-17 90.1 92 57.6
Aa31LG11G14050 Aethionema arabicum HOM05D003939 ORTHO05D005979 1.2e-16 89.7 90 51.1
Glyma.01G130950 Glycine max HOM05D003939 ORTHO05D005979 1.5e-16 89.4 88 56.8
EL10Ac2g03123 Beta vulgaris HOM05D003939 ORTHO05D005979 2.0e-16 89.0 116 49.1
Lsat_1_v5_gn_3_98161 Lactuca sativa HOM05D003939 ORTHO05D005979 2.0e-16 89.0 92 54.3
FAN14G2443 Fragaria x ananassa HOM05D003939 ORTHO05D005979 4.5e-16 87.8 85 57.6
Os07g0110400 Oryza sativa ssp. japonica HOM05D003939 ORTHO05D005979 2.2e-15 85.5 91 53.8
SEGI_06328 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 3.8e-15 84.7 86 50.0
ATR0064G076 Amborella trichopoda HOM05D003939 ORTHO05D005979 5.0e-15 84.3 89 52.8
Zm00001eb298600 Zea mays HOM05D003939 ORTHO05D005979 3.2e-14 81.6 91 51.6
SMO116G0168 Selaginella moellendorffii HOM05D003939 ORTHO05D005979 3.6e-13 78.2 86 45.3
HPP92_012299 Vanilla planifolia HOM05D003939 ORTHO05D005979 3.6e-13 78.2 90 46.7
SEGI_32509 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 6.1e-13 77.4 86 47.7
Zm00001eb118180 Zea mays HOM05D003939 ORTHO05D005979 6.1e-13 77.4 91 49.5
Rhsim10G0043700 Rhododendron simsii HOM05D003939 ORTHO05D005979 1.4e-12 76.3 68 57.4
Mapoly0011s0050 Marchantia polymorpha HOM05D003939 ORTHO05D005979 1.1e-11 73.2 86 43.0
Pp3c15_14600 Physcomitrium patens HOM05D003939 ORTHO05D005979 4.8e-10 67.8 86 40.7
arahy.Tifrunner.gnm1.ann1.HI697U Arachis hypogaea HOM05D001278 ORTHO05D005979 1.4e-09 66.2 67 52.2
AagrBONN_evm.TU.Sc2ySwM_344.3096 Anthoceros agrestis HOM05D003939 ORTHO05D005979 3.1e-09 65.1 86 40.7
Glyma.19G029000 Glycine max HOM05D003939 ORTHO05D005979 1.5e-08 62.8 50 64.0
CSS0005126 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 4.2e-06 54.7 35 71.4
arahy.Tifrunner.gnm1.ann1.BV8AZF Arachis hypogaea HOM05D001278 ORTHO05D004786 5.5e-06 54.3 51 52.9


User provided reference genes

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