Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C000081.2 Cucumis melo HOM05D003148 ORTHO05D003894 1.9e-68 262.3 128 100.0
ClCG10G005550 Citrullus lanatus HOM05D003148 ORTHO05D003894 9.6e-68 260.0 128 98.4
CsaV3_3G005270 Cucumis sativus L. HOM05D003148 ORTHO05D003894 1.3e-67 259.6 128 98.4
Sed0003151 Sechium edule HOM05D003148 ORTHO05D003894 7.6e-65 250.4 128 94.5
BcaB02g11185 Brassica carinata HOM05D003148 ORTHO05D003894 4.9e-64 247.7 128 92.2
A05p19930 Brassica napus HOM05D003148 ORTHO05D003894 4.9e-64 247.7 128 92.2
C05p33280 Brassica napus HOM05D003148 ORTHO05D003894 4.9e-64 247.7 128 92.2
BolC5t32054H Brassica oleracea HOM05D003148 ORTHO05D003894 4.9e-64 247.7 128 92.2
BraA05t20898Z Brassica rapa HOM05D003148 ORTHO05D003894 4.9e-64 247.7 128 92.2
Dinv40737 Davidia involucrata HOM05D003148 ORTHO05D003894 4.9e-64 247.7 128 92.2
Hma1.2p1_0938F.1_g239220 Hydrangea macrophylla HOM05D003148 ORTHO05D003894 1.1e-63 246.5 128 92.2
Sp1g37600 Schrenkiella parvula HOM05D003148 ORTHO05D003894 1.1e-63 246.5 128 91.4
vmacro11740 Vaccinium macrocarpon HOM05D003148 ORTHO05D003894 1.1e-63 246.5 128 91.4
Thhalv10011195m.g Eutrema salsugineum HOM05D003148 ORTHO05D003894 2.4e-63 245.4 128 91.4
Cc05_g13530 Coffea canephora HOM05D003148 ORTHO05D003894 3.2e-63 245.0 128 91.4
MBI02_g28334_MAGBIO Magnolia biondii HOM05D003148 ORTHO05D003894 3.2e-63 245.0 128 93.8
Nn1g07107 Nelumbo nucifera HOM05D003148 ORTHO05D003894 3.2e-63 245.0 128 92.2
Rhsim04G0002300 Rhododendron simsii HOM05D003148 ORTHO05D003894 3.2e-63 245.0 128 92.2
Carub.0001s3979 Capsella rubella HOM05D003148 ORTHO05D003894 4.2e-63 244.6 128 89.8
RhsimUnG0252100 Rhododendron simsii HOM05D003148 ORTHO05D003894 4.2e-63 244.6 128 91.4
THA.LOC104817879 Tarenaya hassleriana HOM05D003148 ORTHO05D003894 4.2e-63 244.6 128 90.6
A05p28320 Brassica napus HOM05D003148 ORTHO05D003894 7.1e-63 243.8 128 91.4
C05p43810 Brassica napus HOM05D003148 ORTHO05D003894 7.1e-63 243.8 128 91.4
BolC5t33096H Brassica oleracea HOM05D003148 ORTHO05D003894 7.1e-63 243.8 128 91.4
BraA05t21714Z Brassica rapa HOM05D003148 ORTHO05D003894 7.1e-63 243.8 128 91.4
Lj1C869T19 Lonicera japonica HOM05D003148 ORTHO05D003894 9.3e-63 243.4 128 91.4
TAR626G0592 Trochodendron aralioides HOM05D003148 ORTHO05D003894 9.3e-63 243.4 128 90.6
BcaC05g27391 Brassica carinata HOM05D003148 ORTHO05D003894 1.2e-62 243.0 129 91.5
FvH4_3g22230 Fragaria vesca HOM05D003148 ORTHO05D003894 1.2e-62 243.0 128 90.6
FAN11G2520 Fragaria x ananassa HOM05D003148 ORTHO05D003894 1.2e-62 243.0 128 90.6
Lj8A168T100 Lonicera japonica HOM05D003148 ORTHO05D003894 1.2e-62 243.0 128 91.4
RcHm_v2.0_Chr5g0038301 Rosa chinensis HOM05D003148 ORTHO05D003894 1.2e-62 243.0 128 90.6
GSVIVG01014163001 Vitis vinifera HOM05D003148 ORTHO05D003894 1.2e-62 243.0 125 93.6
Aa31LG8G7340 Aethionema arabicum HOM05D003148 ORTHO05D003894 1.6e-62 242.7 128 90.6
CSS0045288 Camellia sinensis var. sinensis HOM05D003148 ORTHO05D003894 1.6e-62 242.7 128 90.6
Thhalv10019969m.g Eutrema salsugineum HOM05D003148 ORTHO05D003894 1.6e-62 242.7 128 89.8
Actinidia35330 Actinidia chinensis HOM05D003148 ORTHO05D003894 2.1e-62 242.3 128 90.6
AL3G34360 Arabidopsis lyrata HOM05D003148 ORTHO05D003894 2.1e-62 242.3 128 91.4
CiPaw.12G128200 Carya illinoinensis HOM05D003148 ORTHO05D003894 2.1e-62 242.3 128 89.8
Gohir.A01G078100 Gossypium hirsutum HOM05D003148 ORTHO05D003894 2.1e-62 242.3 128 89.8
Gohir.D01G065200 Gossypium hirsutum HOM05D003148 ORTHO05D003894 2.1e-62 242.3 128 89.8
Gorai.002G086900 Gossypium raimondii HOM05D003148 ORTHO05D003894 2.1e-62 242.3 128 89.8
Lalb_Chr18g0049911 Lupinus albus HOM05D003148 ORTHO05D003894 2.1e-62 242.3 128 92.2
Rhsim06G0215400 Rhododendron simsii HOM05D003148 ORTHO05D003894 2.1e-62 242.3 128 91.4
TAR624G0080 Trochodendron aralioides HOM05D003148 ORTHO05D003894 2.1e-62 242.3 128 90.6
Carub.0003s2050 Capsella rubella HOM05D003148 ORTHO05D003894 2.7e-62 241.9 128 90.6
Actinidia09911 Actinidia chinensis HOM05D003148 ORTHO05D003894 3.5e-62 241.5 128 89.8
CARHR040890 Cardamine hirsuta HOM05D003148 ORTHO05D003894 3.5e-62 241.5 128 88.3
CARHR096300 Cardamine hirsuta HOM05D003148 ORTHO05D003894 3.5e-62 241.5 128 90.6
Ca_06307_v3 Cicer arietinum L. HOM05D003148 ORTHO05D003894 3.5e-62 241.5 128 91.4
Medtr5g092100 Medicago truncatula HOM05D003148 ORTHO05D003894 3.5e-62 241.5 128 91.4
Potri.011G136900 Populus trichocarpa HOM05D003148 ORTHO05D003894 3.5e-62 241.5 127 90.6
AL1G58530 Arabidopsis lyrata HOM05D003148 ORTHO05D003894 4.6e-62 241.1 128 87.5
CAN.G337.107 Capsicum annuum HOM05D003148 ORTHO05D003894 4.6e-62 241.1 128 89.1
Peaxi162Scf00450g00842 Petunia axillaris HOM05D003148 ORTHO05D003894 4.6e-62 241.1 128 88.3
Psat2g015200 Pisum sativum HOM05D003148 ORTHO05D003894 4.6e-62 241.1 128 90.6
Sabra11G0122800 Salix brachista HOM05D003148 ORTHO05D003894 4.6e-62 241.1 127 90.6
TPR.G29117 Trifolium pratense HOM05D003148 ORTHO05D003894 4.6e-62 241.1 128 91.4
Aa31LG10G3300 Aethionema arabicum HOM05D003148 ORTHO05D003894 6.0e-62 240.7 128 89.1
AT3G20540 Arabidopsis thaliana HOM05D003148 ORTHO05D003894 6.0e-62 240.7 128 90.6
Nn1g03580 Nelumbo nucifera HOM05D003148 ORTHO05D003894 6.0e-62 240.7 128 92.2
PGR083G0390 Punica granatum HOM05D003148 ORTHO05D003894 6.0e-62 240.7 128 90.6
Sp3g18540 Schrenkiella parvula HOM05D003148 ORTHO05D003894 6.0e-62 240.7 128 89.8
DCAR_022553 Daucus carota HOM05D003148 ORTHO05D003894 7.9e-62 240.4 128 90.6
Lalb_Chr04g0248571 Lupinus albus HOM05D003148 ORTHO05D003894 7.9e-62 240.4 128 90.6
Potri.001G421300 Populus trichocarpa HOM05D003148 ORTHO05D003894 7.9e-62 240.4 127 91.3
PGSC0003DMG402013919 Solanum tuberosum HOM05D003148 ORTHO05D003894 7.9e-62 240.4 128 89.1
Atru.chr2.3280 Acer truncatum HOM05D003148 ORTHO05D003894 1.0e-61 240.0 128 89.8
Solyc07g064330.3 Solanum lycopersicum HOM05D003148 ORTHO05D003894 1.0e-61 240.0 128 89.1
AT1G50840 Arabidopsis thaliana HOM05D003148 ORTHO05D003894 1.3e-61 239.6 128 85.9
FAN16G3453 Fragaria x ananassa HOM05D003148 ORTHO05D003894 1.3e-61 239.6 128 89.8
FAN21G1173 Fragaria x ananassa HOM05D003148 ORTHO05D003894 1.3e-61 239.6 128 89.8
Glyma.02G289700 Glycine max HOM05D003148 ORTHO05D003894 1.3e-61 239.6 128 91.4
Prupe.4G209500 Prunus persica HOM05D003148 ORTHO05D003894 1.8e-61 239.2 127 90.6
SGA_v2.0_scaffold9G05063 Striga asiatica HOM05D003148 ORTHO05D003894 1.8e-61 239.2 128 88.3
COL.COLO4_09635 Corchorus olitorius HOM05D003148 ORTHO05D003894 2.3e-61 238.8 128 89.1
Phvul.006G039400 Phaseolus vulgaris HOM05D003148 ORTHO05D003894 2.3e-61 238.8 128 89.8
Hund24589 Selenicereus undatus HOM05D003148 ORTHO05D003894 2.3e-61 238.8 128 89.1
CDE01G0619 Ceratophyllum demersum HOM05D003148 ORTHO05D003894 3.0e-61 238.4 128 89.1
Duzib213G0065 Durio zibethinus HOM05D003148 ORTHO05D003894 3.0e-61 238.4 128 89.8
Nitab4.5_0013016g0020 Nicotiana tabacum HOM05D003148 ORTHO05D003894 3.0e-61 238.4 128 88.3
Thecc.07G043600 Theobroma cacao HOM05D003148 ORTHO05D003894 3.0e-61 238.4 128 89.1
Cfa020382 Carpinus fangiana HOM05D003148 ORTHO05D003894 3.9e-61 238.0 128 88.3
Haze_09651 Corylus avellana HOM05D003148 ORTHO05D003894 3.9e-61 238.0 128 88.3
QL08p011843 Quercus lobata HOM05D003148 ORTHO05D003894 3.9e-61 238.0 128 87.5
Glyma.08G313400 Glycine max HOM05D003148 ORTHO05D003894 5.1e-61 237.7 128 89.8
Cpa.g.sc97.33 Carica papaya HOM05D003148 ORTHO05D003894 6.7e-61 237.3 128 87.5
MD11G1221900 Malus domestica HOM05D003148 ORTHO05D003894 6.7e-61 237.3 127 89.8
Manes.14G165664 Manihot esculenta HOM05D003148 ORTHO05D003894 6.7e-61 237.3 128 89.1
Oeu042923.1 Olea europaea HOM05D003148 ORTHO05D003894 8.7e-61 236.9 128 88.3
Sopen07g032480 Solanum pennellii HOM05D003148 ORTHO05D003894 8.7e-61 236.9 128 88.3
arahy.Tifrunner.gnm1.ann1.IVZB0M Arachis hypogaea HOM05D003148 ORTHO05D003894 1.1e-60 236.5 128 88.3
AUR62030324 Chenopodium quinoa HOM05D003148 ORTHO05D003894 1.1e-60 236.5 128 86.7
Glyma.14G025300 Glycine max HOM05D003148 ORTHO05D003894 1.1e-60 236.5 128 90.6
Lj4g0014990 Lotus japonicus HOM05D003148 ORTHO05D003894 1.1e-60 236.5 126 91.3
arahy.Tifrunner.gnm1.ann1.5UV8SN Arachis hypogaea HOM05D003148 ORTHO05D003894 1.5e-60 236.1 128 87.5
Ciclev10007282m.g Citrus clementina HOM05D003148 ORTHO05D003894 1.5e-60 236.1 128 91.4
ECA246G3119 Erigeron canadensis HOM05D003148 ORTHO05D003894 1.5e-60 236.1 128 87.5
CDE05G0870 Ceratophyllum demersum HOM05D003148 ORTHO05D003894 1.9e-60 235.7 128 89.1
Eucgr.F00964 Eucalyptus grandis HOM05D003148 ORTHO05D003894 1.9e-60 235.7 128 87.5
Lsat_1_v5_gn_1_29100 Lactuca sativa HOM05D003148 ORTHO05D003894 1.9e-60 235.7 128 88.3
Phvul.008G265700 Phaseolus vulgaris HOM05D003148 ORTHO05D003894 1.9e-60 235.7 128 89.1
EL10Ac3g07232 Beta vulgaris HOM05D003148 ORTHO05D003894 2.5e-60 235.3 128 85.9
Glyma.19G036300 Glycine max HOM05D003148 ORTHO05D003894 2.5e-60 235.3 128 89.8
Medtr3g050110 Medicago truncatula HOM05D003148 ORTHO05D003894 2.5e-60 235.3 128 88.3
Medtr3g050140 Medicago truncatula HOM05D003148 ORTHO05D003894 2.5e-60 235.3 128 88.3
MSTRG.12966 Avicennia marina HOM05D003148 ORTHO05D003894 3.3e-60 235.0 128 88.3
CiPaw.11G187400 Carya illinoinensis HOM05D003148 ORTHO05D003894 3.3e-60 235.0 128 87.5
Aqoxy3G04136 Aquilegia oxysepala HOM05D003148 ORTHO05D003894 4.3e-60 234.6 127 89.8
AUR62018343 Chenopodium quinoa HOM05D003148 ORTHO05D003894 4.3e-60 234.6 128 85.9
Psat5g183240 Pisum sativum HOM05D003148 ORTHO05D003894 4.3e-60 234.6 128 88.3
TWI38G0810 Tripterygium wilfordii HOM05D003148 ORTHO05D003894 4.3e-60 234.6 128 89.1
HanXRQChr05g0159091 Helianthus annuus HOM05D003148 ORTHO05D003894 5.6e-60 234.2 128 87.5
HanXRQChr05g0159101 Helianthus annuus HOM05D003148 ORTHO05D003894 5.6e-60 234.2 128 87.5
HanXRQChr05g0159391 Helianthus annuus HOM05D003148 ORTHO05D003894 5.6e-60 234.2 128 87.5
Hund19099 Selenicereus undatus HOM05D003148 ORTHO05D003894 5.6e-60 234.2 128 86.7
Ah.13g076880 Amaranthus hybridus HOM05D001433 ORTHO05D005172 9.6e-60 233.4 128 86.7
MSTRG.14430 Avicennia marina HOM05D003148 ORTHO05D003894 9.6e-60 233.4 128 88.3
Sc19g0008220 Simmondsia chinensis HOM05D003148 ORTHO05D003894 9.6e-60 233.4 128 88.3
Ca_14812_v3 Cicer arietinum L. HOM05D003148 ORTHO05D003894 2.1e-59 232.3 128 87.5
Os08g0175300 Oryza sativa ssp. japonica HOM05D003148 ORTHO05D003894 2.8e-59 231.9 128 87.5
Zm00001eb431790 Zea mays HOM05D003148 ORTHO05D003894 2.8e-59 231.9 128 86.7
VMungo0647G1963 Vigna mungo HOM05D003148 ORTHO05D003894 3.7e-59 231.5 128 89.1
Aqoxy1G03292 Aquilegia oxysepala HOM05D003148 ORTHO05D003894 4.8e-59 231.1 125 88.8
Os04g0637400 Oryza sativa ssp. japonica HOM05D003148 ORTHO05D003894 6.2e-59 230.7 128 87.5
SEGI_28554 Sequoiadendron giganteum HOM05D003148 ORTHO05D003894 6.2e-59 230.7 128 85.2
arahy.Tifrunner.gnm1.ann1.FV4ICK Arachis hypogaea HOM05D003148 ORTHO05D003894 8.1e-59 230.3 128 87.5
arahy.Tifrunner.gnm1.ann1.SAW44B Arachis hypogaea HOM05D003148 ORTHO05D003894 8.1e-59 230.3 128 87.5
Atru.chr6.8 Acer truncatum HOM05D003148 ORTHO05D003894 1.8e-58 229.2 128 87.5
ATR0752G224 Amborella trichopoda HOM05D003148 ORTHO05D003894 1.8e-58 229.2 128 86.7
AagrBONN_evm.TU.Sc2ySwM_228.5326 Anthoceros agrestis HOM05D003148 ORTHO05D003894 1.8e-58 229.2 128 83.6
Migut.H01840 Erythranthe guttata HOM05D003148 ORTHO05D003894 1.8e-58 229.2 128 87.5
Sabra16G0286100 Salix brachista HOM05D003148 ORTHO05D003894 6.9e-58 227.3 155 75.5
Mapoly0039s0093 Marchantia polymorpha HOM05D003148 ORTHO05D003894 1.2e-57 226.5 128 83.6
Lj6g0019529 Lotus japonicus HOM05D003148 ORTHO05D003894 2.0e-57 225.7 128 86.7
PSO541G1561 Papaver somniferum HOM05D003148 ORTHO05D003894 2.0e-57 225.7 127 85.8
PSO675G7850 Papaver somniferum HOM05D003148 ORTHO05D003894 4.5e-57 224.6 127 85.0
Duzib170G0998 Durio zibethinus HOM05D003148 ORTHO05D003894 2.9e-56 221.9 128 83.6
Haze_09649 Corylus avellana HOM05D003148 ORTHO05D003894 8.4e-56 220.3 128 82.0
HPP92_009350 Vanilla planifolia HOM05D003148 ORTHO05D003894 1.9e-55 219.2 128 82.8
Cfa020383 Carpinus fangiana HOM05D003148 ORTHO05D003894 7.9e-54 213.8 128 79.7
PSO017G6339 Papaver somniferum HOM05D003148 ORTHO05D003894 4.3e-52 208.0 127 80.3
Pp3c14_14550 Physcomitrium patens HOM05D003148 ORTHO05D003894 2.1e-51 205.7 124 80.6
SEGI_10889 Sequoiadendron giganteum HOM05D003148 ORTHO05D003894 2.1e-51 205.7 121 79.3
Pp3c24_16390 Physcomitrium patens HOM05D003148 ORTHO05D003894 3.7e-51 204.9 124 80.6
SMO356G0432 Selaginella moellendorffii HOM05D003148 ORTHO05D003894 1.1e-50 203.4 136 76.5
Lj6C83G1 Lonicera japonica HOM05D003148 ORTHO05D003894 2.2e-48 195.7 128 71.9
Lju760A7T19 Lonicera japonica HOM05D003148 ORTHO05D003894 9.3e-47 190.3 128 70.3
vmacro09733 Vaccinium macrocarpon HOM05D003148 ORTHO05D003894 1.5e-44 183.0 96 89.6
Zm00001eb414740 Zea mays HOM05D003148 ORTHO05D003894 5.7e-44 181.0 128 71.9
Oeu062599.1 Olea europaea HOM05D003148 ORTHO05D003894 1.3e-43 179.9 130 69.2
MCO10G006 Micromonas commoda HOM05D003148 ORTHO05D003894 1.1e-42 176.8 123 72.4
TAR624G0632 Trochodendron aralioides HOM05D003148 ORTHO05D003894 1.4e-42 176.4 97 87.6
Cfa019820 Carpinus fangiana HOM05D003148 ORTHO05D003894 5.3e-42 174.5 97 83.5
PRCOL_00004766 Prasinoderma coloniale HOM05D003148 ORTHO05D003894 1.9e-39 166.0 121 69.4
Lj6A79G3 Lonicera japonica HOM05D003148 ORTHO05D003894 7.2e-39 164.1 97 76.3
SHI31847 Sapria himalayana HOM05D003148 ORTHO05D003894 1.8e-37 159.5 121 66.1
PRCOL_00004837 Prasinoderma coloniale HOM05D003148 ORTHO05D003894 1.4e-31 139.8 119 61.3
Pp3c8_21620 Physcomitrium patens HOM05D003148 ORTHO05D003894 2.7e-30 135.6 125 58.4
arahy.Tifrunner.gnm1.ann1.CSHU8D Arachis hypogaea HOM05D003148 ORTHO05D003894 2.2e-27 125.9 89 69.7
TPR.G16586 Trifolium pratense HOM05D003148 ORTHO05D003894 4.1e-26 121.7 66 84.8
unitig_52.g17354 Utricularia gibba HOM05D003148 ORTHO05D003894 7.0e-26 120.9 66 84.8
Nitab4.5_0000397g0350 Nicotiana tabacum HOM05D003148 ORTHO05D003894 2.6e-25 119.0 63 88.9
Nitab4.5_0000622g0240 Nicotiana tabacum HOM05D003148 ORTHO05D003894 2.6e-25 119.0 63 88.9
CBR_g50948 Chara braunii HOM05D003148 ORTHO05D003894 4.5e-25 118.2 64 87.5
Cre08.g363837 Chlamydomonas reinhardtii HOM05D003148 ORTHO05D003894 7.7e-25 117.5 73 79.5
Duzib170G0475 Durio zibethinus HOM05D003148 ORTHO05D003894 1.9e-23 112.8 68 73.5
arahy.Tifrunner.gnm1.ann1.QLJ615 Arachis hypogaea HOM05D003148 ORTHO05D003894 3.2e-23 112.1 128 53.1
Glyma.13G112951 Glycine max HOM05D003148 ORTHO05D003894 1.1e-18 97.1 51 84.3
Glyma.14G191601 Glycine max HOM05D003148 ORTHO05D003894 1.1e-18 97.1 51 84.3
LjContig00351g0021948 Lotus japonicus HOM05D003148 ORTHO05D003894 2.4e-18 95.9 51 84.3
arahy.Tifrunner.gnm1.ann1.CVK6CU Arachis hypogaea HOM05D003148 ORTHO05D002594 1.0e-13 80.5 50 76.0
Lsat_1_v5_gn_3_87421 Lactuca sativa HOM05D003148 ORTHO05D003894 1.4e-13 80.1 49 69.4
arahy.Tifrunner.gnm1.ann1.L8USRH Arachis hypogaea HOM05D003148 ORTHO05D003894 2.3e-13 79.3 84 54.8
Lsat_1_v5_gn_3_87460 Lactuca sativa HOM05D003148 ORTHO05D003894 4.0e-13 78.6 49 69.4
SEGI_08935 Sequoiadendron giganteum HOM05D003148 ORTHO05D003894 2.6e-12 75.9 72 58.3
MCO12G059 Micromonas commoda HOM05D003889 ORTHO05D004407 5.9e-09 64.7 87 41.4
Cre17.g736150 Chlamydomonas reinhardtii HOM05D003889 ORTHO05D004407 1.0e-08 63.9 101 35.6
SHI31846 Sapria himalayana HOM05D003148 ORTHO05D030578 2.2e-08 62.8 32 93.8
TPR.G20349 Trifolium pratense HOM05D003148 ORTHO05D030578 2.5e-07 59.3 36 80.6
TPR.G14286 Trifolium pratense HOM05D003148 ORTHO05D030578 1.2e-06 57.0 32 84.4
TPR.G95 Trifolium pratense HOM05D003148 ORTHO05D030578 1.2e-06 57.0 36 77.8


User provided reference genes

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