Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD17G1105500 Malus domestica HOM05D006371 ORTHO05D008309 1.4e-16 88.6 46 100.0
FvH4_6g40410 Fragaria vesca HOM05D006371 ORTHO05D008309 5.4e-13 76.6 41 97.6
FAN02G4613 Fragaria x ananassa HOM05D006371 ORTHO05D008309 5.4e-13 76.6 41 97.6
FAN05G5438 Fragaria x ananassa HOM05D006371 ORTHO05D008309 5.4e-13 76.6 41 97.6
FAN09G0519 Fragaria x ananassa HOM05D006371 ORTHO05D008309 5.4e-13 76.6 41 97.6
FAN14G0004 Fragaria x ananassa HOM05D006371 ORTHO05D008309 5.4e-13 76.6 41 97.6
Prupe.3G194900 Prunus persica HOM05D006371 ORTHO05D008309 5.4e-13 76.6 41 97.6
RcHm_v2.0_Chr2g0155641 Rosa chinensis HOM05D006371 ORTHO05D008309 5.4e-13 76.6 41 97.6
MD09G1130200 Malus domestica HOM05D006371 ORTHO05D008309 1.6e-12 75.1 41 95.1
AL3G41970 Arabidopsis lyrata HOM05D006371 ORTHO05D008309 3.5e-12 73.9 41 92.7
AT2G04270 Arabidopsis thaliana HOM05D006371 ORTHO05D008309 3.5e-12 73.9 41 92.7
BcaB06g26772 Brassica carinata HOM05D006371 ORTHO05D008309 3.5e-12 73.9 41 92.7
Carub.0003s2599 Capsella rubella HOM05D006371 ORTHO05D008309 3.5e-12 73.9 41 92.7
Ciclev10014166m.g Citrus clementina HOM05D006371 ORTHO05D008309 3.5e-12 73.9 41 92.7
Eucgr.A01367 Eucalyptus grandis HOM05D006371 ORTHO05D008309 3.5e-12 73.9 41 92.7
THA.LOC104808834 Tarenaya hassleriana HOM05D006371 ORTHO05D008309 3.5e-12 73.9 41 92.7
MELO3C024185.2 Cucumis melo HOM05D006371 ORTHO05D008309 6.0e-12 73.2 41 92.7
Sed0018275 Sechium edule HOM05D006371 ORTHO05D008309 6.0e-12 73.2 41 92.7
BcaC06g35860 Brassica carinata HOM05D006371 ORTHO05D008309 7.8e-12 72.8 41 90.2
A07p06760 Brassica napus HOM05D006371 ORTHO05D008309 7.8e-12 72.8 41 90.2
C07p10340 Brassica napus HOM05D006371 ORTHO05D008309 7.8e-12 72.8 41 90.2
BolC7t41483H Brassica oleracea HOM05D006371 ORTHO05D008309 7.8e-12 72.8 41 90.2
BraA07t28469Z Brassica rapa HOM05D006371 ORTHO05D008309 7.8e-12 72.8 41 90.2
CARHR102110 Cardamine hirsuta HOM05D006371 ORTHO05D008309 7.8e-12 72.8 41 90.2
Cpa.g.sc136.51 Carica papaya HOM05D006371 ORTHO05D008309 7.8e-12 72.8 41 92.7
Thhalv10002385m.g Eutrema salsugineum HOM05D006371 ORTHO05D008309 7.8e-12 72.8 41 90.2
Gohir.A11G148000 Gossypium hirsutum HOM05D006371 ORTHO05D008309 7.8e-12 72.8 41 90.2
Gohir.D11G154800 Gossypium hirsutum HOM05D006371 ORTHO05D008309 7.8e-12 72.8 41 90.2
Gorai.007G165100 Gossypium raimondii HOM05D006371 ORTHO05D008309 7.8e-12 72.8 41 90.2
Lalb_Chr04g0252451 Lupinus albus HOM05D006371 ORTHO05D008309 7.8e-12 72.8 41 92.7
Sp3g23150 Schrenkiella parvula HOM05D006371 ORTHO05D008309 7.8e-12 72.8 41 90.2
CANSAT64G2089 Cannabis sativa HOM05D006371 ORTHO05D008309 1.0e-11 72.4 41 90.2
Cfa014202 Carpinus fangiana HOM05D006371 ORTHO05D008309 1.0e-11 72.4 41 90.2
CiPaw.03G283700 Carya illinoinensis HOM05D006371 ORTHO05D008309 1.0e-11 72.4 41 90.2
Dinv40160 Davidia involucrata HOM05D006371 ORTHO05D008309 1.0e-11 72.4 41 90.2
QL04p067039 Quercus lobata HOM05D006371 ORTHO05D008309 1.0e-11 72.4 41 90.2
TAR627G0565 Trochodendron aralioides HOM05D006371 ORTHO05D008309 1.0e-11 72.4 41 90.2
Ah.02g129050 Amaranthus hybridus HOM05D006371 ORTHO05D008309 1.3e-11 72.0 41 90.2
Migut.D00896 Erythranthe guttata HOM05D006371 ORTHO05D008309 1.3e-11 72.0 41 90.2
Glyma.14G190200 Glycine max HOM05D006371 ORTHO05D008309 1.3e-11 72.0 41 87.8
Nn1g07560 Nelumbo nucifera HOM05D006371 ORTHO05D008309 1.3e-11 72.0 41 90.2
TWI36G0955 Tripterygium wilfordii HOM05D006371 ORTHO05D008309 1.3e-11 72.0 41 90.2
GSVIVG01030124001 Vitis vinifera HOM05D006371 ORTHO05D008309 1.3e-11 72.0 41 90.2
CsaV3_2G010080 Cucumis sativus L. HOM05D006371 ORTHO05D008309 1.7e-11 71.6 41 90.2
arahy.Tifrunner.gnm1.ann1.BM1T67 Arachis hypogaea HOM05D006371 ORTHO05D008309 2.3e-11 71.2 41 87.8
arahy.Tifrunner.gnm1.ann1.YIC3VW Arachis hypogaea HOM05D006371 ORTHO05D008309 2.3e-11 71.2 41 87.8
Duzib211G0069 Durio zibethinus HOM05D006371 ORTHO05D008309 2.3e-11 71.2 41 87.8
Dinv08538 Davidia involucrata HOM05D006371 ORTHO05D008309 3.0e-11 70.9 41 87.8
Sc07g0001260 Simmondsia chinensis HOM05D006371 ORTHO05D008309 3.0e-11 70.9 41 87.8
Thecc.01G199300 Theobroma cacao HOM05D006371 ORTHO05D008309 3.0e-11 70.9 41 87.8
Aa31sc575G10 Aethionema arabicum HOM05D006371 ORTHO05D008309 3.9e-11 70.5 41 87.8
ECA232G0409 Erigeron canadensis HOM05D006371 ORTHO05D008309 3.9e-11 70.5 41 85.4
Glyma.02G223400 Glycine max HOM05D006371 ORTHO05D008309 3.9e-11 70.5 41 85.4
Medtr5g069430 Medicago truncatula HOM05D006371 ORTHO05D008309 3.9e-11 70.5 41 85.4
Lsat_1_v5_gn_4_142580 Lactuca sativa HOM05D006371 ORTHO05D008309 5.1e-11 70.1 41 87.8
CAN.G890.8 Capsicum annuum HOM05D006371 ORTHO05D008309 6.6e-11 69.7 41 87.8
Cc07_g11500 Coffea canephora HOM05D006371 ORTHO05D008309 6.6e-11 69.7 41 87.8
ECA238G3451 Erigeron canadensis HOM05D006371 ORTHO05D008309 6.6e-11 69.7 41 87.8
PSO541G0072 Papaver somniferum HOM05D006371 ORTHO05D008309 6.6e-11 69.7 41 85.4
Peaxi162Scf00300g00515 Petunia axillaris HOM05D006371 ORTHO05D008309 6.6e-11 69.7 41 87.8
Solyc02g083140.3 Solanum lycopersicum HOM05D006371 ORTHO05D008309 6.6e-11 69.7 41 87.8
Sopen02g027900 Solanum pennellii HOM05D006371 ORTHO05D008309 6.6e-11 69.7 41 87.8
PGSC0003DMG400001545 Solanum tuberosum HOM05D006371 ORTHO05D008309 6.6e-11 69.7 41 87.8
AUR62039632 Chenopodium quinoa HOM05D006371 ORTHO05D008309 8.6e-11 69.3 41 85.4
AUR62040011 Chenopodium quinoa HOM05D006371 ORTHO05D008309 8.6e-11 69.3 41 85.4
Lj4C228G6 Lonicera japonica HOM05D006371 ORTHO05D008309 8.6e-11 69.3 41 85.4
LjContig00155g0006571 Lotus japonicus HOM05D006371 ORTHO05D008309 8.6e-11 69.3 41 87.8
Duzib133G1082 Durio zibethinus HOM05D006371 ORTHO05D008309 1.1e-10 68.9 41 82.9
Manes.12G064500 Manihot esculenta HOM05D006371 ORTHO05D008309 1.1e-10 68.9 41 85.4
COL.COLO4_19652 Corchorus olitorius HOM05D006371 ORTHO05D008309 1.5e-10 68.6 41 82.9
PSO675G4792 Papaver somniferum HOM05D006371 ORTHO05D008309 1.5e-10 68.6 41 82.9
CSS0032100 Camellia sinensis var. sinensis HOM05D006371 ORTHO05D008309 2.5e-10 67.8 41 85.4
PGR031G1410 Punica granatum HOM05D006371 ORTHO05D008309 2.5e-10 67.8 41 85.4
EL10Ac6g13348 Beta vulgaris HOM05D006371 ORTHO05D008309 3.3e-10 67.4 41 80.5
Potri.014G170300 Populus trichocarpa HOM05D006371 ORTHO05D008309 3.3e-10 67.4 41 85.4
Sabra14G0129800 Salix brachista HOM05D006371 ORTHO05D008309 3.3e-10 67.4 41 85.4
SalBow7G3887 Salvia bowleyana HOM05D006371 ORTHO05D008309 3.3e-10 67.4 41 85.4
Oeu049652.2 Olea europaea HOM05D006371 ORTHO05D008309 4.3e-10 67.0 41 82.9
Aqoxy3G02224 Aquilegia oxysepala HOM05D006371 ORTHO05D008309 5.6e-10 66.6 41 82.9
Haze_12589 Corylus avellana HOM05D006371 ORTHO05D008309 5.6e-10 66.6 37 91.9
HanXRQChr09g0256951 Helianthus annuus HOM05D006371 ORTHO05D008309 5.6e-10 66.6 41 82.9
HPP92_003032 Vanilla planifolia HOM05D006371 ORTHO05D008309 9.5e-10 65.9 41 80.5
ATR0751G221 Amborella trichopoda HOM05D006371 ORTHO05D008309 1.2e-09 65.5 41 78.0
TPR.G13852 Trifolium pratense HOM05D006371 ORTHO05D008309 1.2e-09 65.5 41 75.6
MSTRG.10896 Avicennia marina HOM05D006371 ORTHO05D008309 1.6e-09 65.1 41 82.9
Ca_05557_v3 Cicer arietinum L. HOM05D006371 ORTHO05D008309 1.6e-09 65.1 41 78.0
unitig_748.g7080 Utricularia gibba HOM05D006371 ORTHO05D005825 4.7e-09 63.5 41 82.9
Nitab4.5_0005413g0050 Nicotiana tabacum HOM05D006371 ORTHO05D008309 6.2e-09 63.2 41 78.0
Actinidia02362 Actinidia chinensis HOM05D006371 ORTHO05D008309 8.1e-09 62.8 41 78.0
AUR62026201 Chenopodium quinoa HOM05D006371 ORTHO05D008309 1.8e-08 61.6 37 83.8
Hund03661 Selenicereus undatus HOM05D006371 ORTHO05D008309 5.2e-08 60.1 41 78.0
Zm00001eb038720 Zea mays HOM05D006371 ORTHO05D008309 6.8e-08 59.7 41 75.6
Hund03659 Selenicereus undatus HOM05D006371 ORTHO05D008309 8.9e-08 59.3 41 75.6
Os08g0323600 Oryza sativa ssp. japonica HOM05D006371 ORTHO05D008309 4.4e-07 57.0 41 73.2
Psat2g060760 Pisum sativum HOM05D006371 ORTHO05D008309 5.8e-07 56.6 40 72.5


User provided reference genes

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