Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD15G1297400 Malus domestica HOM05D002725 ORTHO05D003279 4.5e-71 271.2 139 100.0
Prupe.5G061600 Prunus persica HOM05D002725 ORTHO05D003279 1.1e-53 213.4 140 82.1
Prupe.6G220500 Prunus persica HOM05D002725 ORTHO05D003279 1.1e-53 213.4 140 82.1
MD02G1186000 Malus domestica HOM05D002725 ORTHO05D003279 3.3e-53 211.8 140 82.1
Glyma.19G082500 Glycine max HOM05D002725 ORTHO05D003279 1.0e-51 206.8 138 79.7
VMungo0464G0614 Vigna mungo HOM05D002725 ORTHO05D003279 1.4e-51 206.5 135 80.7
Duzib106G0624 Durio zibethinus HOM05D002725 ORTHO05D003279 1.8e-51 206.1 138 79.0
Duzib268G0345 Durio zibethinus HOM05D002725 ORTHO05D003279 1.8e-51 206.1 138 79.0
Glyma.16G063000 Glycine max HOM05D002725 ORTHO05D003279 2.3e-51 205.7 138 79.0
Gohir.A03G140600 Gossypium hirsutum HOM05D002725 ORTHO05D003279 2.3e-51 205.7 138 79.0
Gohir.D02G163400 Gossypium hirsutum HOM05D002725 ORTHO05D003279 2.3e-51 205.7 138 79.0
Gorai.005G183400 Gossypium raimondii HOM05D002725 ORTHO05D003279 2.3e-51 205.7 138 79.0
Phvul.003G041300 Phaseolus vulgaris HOM05D002725 ORTHO05D003279 2.3e-51 205.7 138 79.0
CiPaw.05G149700 Carya illinoinensis HOM05D002725 ORTHO05D003279 3.0e-51 205.3 138 79.0
CiPaw.14G100600 Carya illinoinensis HOM05D002725 ORTHO05D003279 3.0e-51 205.3 138 79.0
Lalb_Chr22g0360531 Lupinus albus HOM05D002725 ORTHO05D003279 3.0e-51 205.3 138 79.7
Psat3g161280 Pisum sativum HOM05D002725 ORTHO05D003279 3.0e-51 205.3 138 79.7
Ca_06608_v3 Cicer arietinum L. HOM05D002725 ORTHO05D003279 4.0e-51 204.9 138 78.3
Ciclev10031363m.g Citrus clementina HOM05D002725 ORTHO05D003279 4.0e-51 204.9 135 79.3
Ca_25613_v3 Cicer arietinum L. HOM05D002725 ORTHO05D003279 1.2e-50 203.4 138 78.3
Manes.12G030200 Manihot esculenta HOM05D002725 ORTHO05D003279 1.2e-50 203.4 138 77.5
Haze_12164 Corylus avellana HOM05D002725 ORTHO05D003279 2.0e-50 202.6 138 77.5
Potri.002G176000 Populus trichocarpa HOM05D002725 ORTHO05D003279 2.0e-50 202.6 138 77.5
AUR62005361 Chenopodium quinoa HOM05D002725 ORTHO05D003279 2.6e-50 202.2 135 78.5
Dinv24871 Davidia involucrata HOM05D002725 ORTHO05D003279 2.6e-50 202.2 138 78.3
Eucgr.H02616 Eucalyptus grandis HOM05D002725 ORTHO05D003279 2.6e-50 202.2 140 77.9
QL03p061701 Quercus lobata HOM05D002725 ORTHO05D003279 2.6e-50 202.2 138 77.5
Ah.02g129870 Amaranthus hybridus HOM05D002725 ORTHO05D003279 3.4e-50 201.8 135 77.8
PGR119G1015 Punica granatum HOM05D002725 ORTHO05D003279 5.7e-50 201.1 140 77.1
TPR.G9070 Trifolium pratense HOM05D002725 ORTHO05D003279 5.7e-50 201.1 138 77.5
GSVIVG01020223001 Vitis vinifera HOM05D002725 ORTHO05D003279 5.7e-50 201.1 138 77.5
arahy.Tifrunner.gnm1.ann1.JXF13M Arachis hypogaea HOM05D002725 ORTHO05D003279 1.3e-49 199.9 138 76.1
arahy.Tifrunner.gnm1.ann1.LYET28 Arachis hypogaea HOM05D002725 ORTHO05D003279 1.3e-49 199.9 138 76.1
FAN23G0685 Fragaria x ananassa HOM05D002725 ORTHO05D003279 1.3e-49 199.9 141 78.0
Sabra02G0137700 Salix brachista HOM05D002725 ORTHO05D003279 1.3e-49 199.9 138 76.8
CDE11G0115 Ceratophyllum demersum HOM05D002725 ORTHO05D003279 1.7e-49 199.5 120 85.8
FvH4_1g17710 Fragaria vesca HOM05D002725 ORTHO05D003279 1.7e-49 199.5 141 78.0
FAN26G2216 Fragaria x ananassa HOM05D002725 ORTHO05D003279 1.7e-49 199.5 141 78.0
Rhsim12G0121500 Rhododendron simsii HOM05D002725 ORTHO05D003279 2.9e-49 198.7 138 76.1
Aqoxy3G02968 Aquilegia oxysepala HOM05D002725 ORTHO05D003279 4.9e-49 198.0 138 75.4
arahy.Tifrunner.gnm1.ann1.D69TB6 Arachis hypogaea HOM05D002725 ORTHO05D003279 6.4e-49 197.6 138 75.4
arahy.Tifrunner.gnm1.ann1.JTBU3D Arachis hypogaea HOM05D002725 ORTHO05D003279 6.4e-49 197.6 138 75.4
Mapoly0042s0037 Marchantia polymorpha HOM05D002725 ORTHO05D003279 1.1e-48 196.8 122 84.4
Hma1.2p1_0867F.1_g230300 Hydrangea macrophylla HOM05D002725 ORTHO05D003279 1.4e-48 196.4 138 76.8
Nn3g16917 Nelumbo nucifera HOM05D002725 ORTHO05D003279 1.4e-48 196.4 120 83.3
Cpa.g.sc824.3 Carica papaya HOM05D002725 ORTHO05D003279 4.1e-48 194.9 138 75.4
ClCG05G025230 Citrullus lanatus HOM05D002725 ORTHO05D003279 7.0e-48 194.1 135 76.3
MELO3C012005.2 Cucumis melo HOM05D002725 ORTHO05D003279 7.0e-48 194.1 135 76.3
CsaV3_5G031650 Cucumis sativus L. HOM05D002725 ORTHO05D003279 7.0e-48 194.1 135 76.3
Pp3c5_26190 Physcomitrium patens HOM05D002725 ORTHO05D003279 7.0e-48 194.1 122 83.6
Sed0004453 Sechium edule HOM05D002725 ORTHO05D003279 7.0e-48 194.1 135 77.0
ATR0680G011 Amborella trichopoda HOM05D002725 ORTHO05D003279 1.2e-47 193.4 138 75.4
Cc11_g14540 Coffea canephora HOM05D002725 ORTHO05D003279 1.2e-47 193.4 138 75.4
AagrBONN_evm.TU.Sc2ySwM_344.2036 Anthoceros agrestis HOM05D002725 ORTHO05D003279 3.5e-47 191.8 140 73.6
CANSAT56G0776 Cannabis sativa HOM05D002725 ORTHO05D003279 3.5e-47 191.8 138 75.4
AagrBONN_evm.TU.Sc2ySwM_368.3392 Anthoceros agrestis HOM05D002725 ORTHO05D003279 5.9e-47 191.0 122 81.1
Actinidia01708 Actinidia chinensis HOM05D002725 ORTHO05D003279 7.8e-47 190.7 138 76.1
DCAR_031095 Daucus carota HOM05D002725 ORTHO05D003279 7.8e-47 190.7 138 75.4
SalBow2G2496 Salvia bowleyana HOM05D002725 ORTHO05D003279 2.3e-46 189.1 138 76.1
Migut.K01129 Erythranthe guttata HOM05D002725 ORTHO05D003279 3.0e-46 188.7 138 75.4
Phvul.008G149300 Phaseolus vulgaris HOM05D002725 ORTHO05D003279 3.0e-46 188.7 138 73.2
HanXRQChr08g0234721 Helianthus annuus HOM05D002725 ORTHO05D003279 5.0e-46 188.0 138 72.5
TPR.G10571 Trifolium pratense HOM05D002725 ORTHO05D003279 6.6e-46 187.6 133 73.7
MSTRG.7887 Avicennia marina HOM05D002725 ORTHO05D003279 8.6e-46 187.2 138 74.6
Lsat_1_v5_gn_1_10560 Lactuca sativa HOM05D002725 ORTHO05D003279 8.6e-46 187.2 140 72.1
TPR.G37028 Trifolium pratense HOM05D002725 ORTHO05D003279 8.6e-46 187.2 117 83.8
COL.COLO4_36975 Corchorus olitorius HOM05D002725 ORTHO05D003279 1.1e-45 186.8 138 72.5
ECA233G4284 Erigeron canadensis HOM05D002725 ORTHO05D003279 1.9e-45 186.0 140 72.1
Lsat_1_v5_gn_8_158161 Lactuca sativa HOM05D002725 ORTHO05D003279 5.6e-45 184.5 138 71.7
Medtr7g037560 Medicago truncatula HOM05D002725 ORTHO05D003279 5.6e-45 184.5 135 74.1
FAN28G0598 Fragaria x ananassa HOM05D002725 ORTHO05D003279 1.2e-44 183.3 141 73.0
Manes.13G031300 Manihot esculenta HOM05D002725 ORTHO05D003279 1.2e-44 183.3 138 71.0
RcHm_v2.0_Chr2g0108041 Rosa chinensis HOM05D002725 ORTHO05D003279 1.2e-44 183.3 141 73.0
Potri.014G102800 Populus trichocarpa HOM05D002725 ORTHO05D003279 6.2e-44 181.0 139 71.2
Peaxi162Scf00301g00128 Petunia axillaris HOM05D002725 ORTHO05D003279 8.0e-44 180.6 138 71.7
unitig_22.g6933 Utricularia gibba HOM05D002725 ORTHO05D003279 8.0e-44 180.6 140 70.7
Nitab4.5_0001381g0050 Nicotiana tabacum HOM05D002725 ORTHO05D003279 4.0e-43 178.3 138 71.0
Nitab4.5_0002289g0110 Nicotiana tabacum HOM05D002725 ORTHO05D003279 4.0e-43 178.3 138 71.0
CAN.G1178.23 Capsicum annuum HOM05D002725 ORTHO05D003279 6.8e-43 177.6 138 71.0
PSO063G5148 Papaver somniferum HOM05D002725 ORTHO05D003279 6.8e-43 177.6 141 70.9
PSO832G2366 Papaver somniferum HOM05D002725 ORTHO05D003279 6.8e-43 177.6 141 70.9
Solyc08g078430.4 Solanum lycopersicum HOM05D002725 ORTHO05D003279 6.8e-43 177.6 138 71.0
Sopen08g026920 Solanum pennellii HOM05D002725 ORTHO05D003279 6.8e-43 177.6 138 71.0
PGSC0003DMG400004771 Solanum tuberosum HOM05D002725 ORTHO05D003279 6.8e-43 177.6 138 71.0
THA.LOC104812782 Tarenaya hassleriana HOM05D002725 ORTHO05D003279 6.8e-43 177.6 140 70.7
THA.LOC104816751 Tarenaya hassleriana HOM05D002725 ORTHO05D003279 6.8e-43 177.6 140 70.7
MBI10_g36211_MAGBIO Magnolia biondii HOM05D002725 ORTHO05D003279 8.9e-43 177.2 138 71.7
SMO139G0072 Selaginella moellendorffii HOM05D002725 ORTHO05D003279 1.2e-42 176.8 121 77.7
DCAR_025614 Daucus carota HOM05D002725 ORTHO05D003279 2.0e-42 176.0 138 68.8
MBI18_g25085_MAGBIO Magnolia biondii HOM05D002725 ORTHO05D003279 2.6e-42 175.6 138 71.0
AUR62014016 Chenopodium quinoa HOM05D002725 ORTHO05D003279 5.8e-42 174.5 119 77.3
Hund25340 Selenicereus undatus HOM05D002725 ORTHO05D003279 2.2e-41 172.6 138 68.1
Lj1g0003905 Lotus japonicus HOM05D002725 ORTHO05D003279 4.9e-41 171.4 138 68.8
Zm00001eb074440 Zea mays HOM05D002725 ORTHO05D003279 8.3e-41 170.6 138 68.8
PSO832G3550 Papaver somniferum HOM05D002725 ORTHO05D003279 1.2e-39 166.8 117 75.2
CBR_g50945 Chara braunii HOM05D002725 ORTHO05D003279 1.6e-39 166.4 134 69.4
Thecc.02G244300 Theobroma cacao HOM05D002725 ORTHO05D003279 3.5e-39 165.2 138 65.9
Peaxi162Scf01086g00013 Petunia axillaris HOM05D002725 ORTHO05D003279 2.3e-38 162.5 123 73.2
TWI75G1526 Tripterygium wilfordii HOM05D002725 ORTHO05D003279 2.3e-38 162.5 138 65.2
HPP92_018031 Vanilla planifolia HOM05D002725 ORTHO05D003279 5.0e-38 161.4 138 63.0
Aa31LG2G10130 Aethionema arabicum HOM05D002725 ORTHO05D003279 1.6e-36 156.4 142 65.5
AL2G16480 Arabidopsis lyrata HOM05D002725 ORTHO05D003279 3.6e-36 155.2 142 64.1
Carub.0002s0508 Capsella rubella HOM05D002725 ORTHO05D003279 3.6e-36 155.2 142 64.1
CARHR292010 Cardamine hirsuta HOM05D002725 ORTHO05D003279 3.6e-36 155.2 142 64.1
CSS0011985 Camellia sinensis var. sinensis HOM05D002725 ORTHO05D003279 4.7e-36 154.8 138 63.0
CSS0030976 Camellia sinensis var. sinensis HOM05D002725 ORTHO05D003279 4.7e-36 154.8 138 63.0
vmacro16261 Vaccinium macrocarpon HOM05D002725 ORTHO05D003279 4.7e-36 154.8 126 69.0
Sp2g04490 Schrenkiella parvula HOM05D002725 ORTHO05D003279 6.2e-36 154.5 142 64.1
AT1G60170 Arabidopsis thaliana HOM05D002725 ORTHO05D003279 1.4e-35 153.3 142 63.4
Actinidia08169 Actinidia chinensis HOM05D002725 ORTHO05D003279 2.3e-35 152.5 120 72.5
BcaC06g31807 Brassica carinata HOM05D002725 ORTHO05D003279 3.1e-35 152.1 142 62.0
Os04g0555400 Oryza sativa ssp. japonica HOM05D002725 ORTHO05D003279 6.8e-35 151.0 138 60.9
BcaB04g20253 Brassica carinata HOM05D002725 ORTHO05D003279 1.2e-34 150.2 142 61.3
BcaC02g10686 Brassica carinata HOM05D002725 ORTHO05D003279 1.2e-34 150.2 142 61.3
BcaC09g49421 Brassica carinata HOM05D002725 ORTHO05D003279 1.2e-34 150.2 142 61.3
A01p29130 Brassica napus HOM05D002725 ORTHO05D003279 1.2e-34 150.2 142 61.3
BolC1t03648H Brassica oleracea HOM05D002725 ORTHO05D003279 1.2e-34 150.2 142 61.3
BolC4t24141H Brassica oleracea HOM05D002725 ORTHO05D003279 1.2e-34 150.2 142 61.3
BraA01t02981Z Brassica rapa HOM05D002725 ORTHO05D003279 1.2e-34 150.2 142 61.3
C01p36870 Brassica napus HOM05D002725 ORTHO05D003279 3.4e-34 148.7 142 60.6
Os07g0141600 Oryza sativa ssp. japonica HOM05D002725 ORTHO05D003279 4.4e-34 148.3 138 60.9
Os02g0730100 Oryza sativa ssp. japonica HOM05D002725 ORTHO05D003279 9.8e-34 147.1 114 67.5
SHI27131 Sapria himalayana HOM05D002725 ORTHO05D003279 1.3e-33 146.7 106 73.6
FAN19G1008 Fragaria x ananassa HOM05D002725 ORTHO05D003279 2.2e-33 146.0 105 78.1
EL10Ac6g13658 Beta vulgaris HOM05D002725 ORTHO05D003279 2.9e-33 145.6 104 76.0
TAR629G1020 Trochodendron aralioides HOM05D002725 ORTHO05D003279 3.7e-33 145.2 105 77.1
Aqoxy3G02785 Aquilegia oxysepala HOM05D002725 ORTHO05D003279 5.4e-32 141.4 86 83.7
COL.COLO4_32664 Corchorus olitorius HOM05D002725 ORTHO05D003279 3.5e-31 138.7 100 75.0
PGSC0003DMG400019262 Solanum tuberosum HOM05D002725 ORTHO05D003279 6.0e-31 137.9 123 65.9
SGA_v2.0_scaffold165G38254 Striga asiatica HOM05D002725 ORTHO05D003279 1.7e-30 136.3 95 73.7
C04p26660 Brassica napus HOM05D002725 ORTHO05D003279 3.9e-30 135.2 116 66.4
SGA_v2.0_scaffold36G14409 Striga asiatica HOM05D002725 ORTHO05D003279 2.5e-29 132.5 95 80.0
Nitab4.5_0001219g0140 Nicotiana tabacum HOM05D002725 ORTHO05D003279 5.6e-29 131.3 119 68.1
BcaC05g25456 Brassica carinata HOM05D002725 ORTHO05D003279 9.5e-29 130.6 129 61.2
BolC5t30077H Brassica oleracea HOM05D002725 ORTHO05D003279 9.5e-29 130.6 129 61.2
Solyc07g064070.3 Solanum lycopersicum HOM05D002725 ORTHO05D003279 1.6e-28 129.8 123 63.4
C05p51290 Brassica napus HOM05D002725 ORTHO05D003279 2.1e-28 129.4 133 57.9
CAN.G337.150 Capsicum annuum HOM05D002725 ORTHO05D003279 3.6e-28 128.6 99 70.7
C05p13400 Brassica napus HOM05D002725 ORTHO05D003279 1.1e-27 127.1 129 60.5
BcaC05g25461 Brassica carinata HOM05D002725 ORTHO05D003279 1.4e-27 126.7 129 59.7
Thhalv10009759m.g Eutrema salsugineum HOM05D002725 ORTHO05D003279 1.8e-27 126.3 127 61.4
Sopen07g032210 Solanum pennellii HOM05D002725 ORTHO05D003279 2.3e-27 125.9 121 62.8
A06p11270 Brassica napus HOM05D002725 ORTHO05D003279 4.0e-27 125.2 129 60.5
BraA06t24307Z Brassica rapa HOM05D002725 ORTHO05D003279 4.0e-27 125.2 129 60.5
CAN.G1178.19 Capsicum annuum HOM05D002725 ORTHO05D003279 8.9e-27 124.0 86 77.9
Duzib248G0107 Durio zibethinus HOM05D002725 ORTHO05D003279 8.9e-27 124.0 100 70.0
Nitab4.5_0000368g0220 Nicotiana tabacum HOM05D002725 ORTHO05D003279 2.6e-26 122.5 113 62.8
Thhalv10023432m.g Eutrema salsugineum HOM05D002725 ORTHO05D003279 2.2e-25 119.4 113 61.1
AL3G44040 Arabidopsis lyrata HOM05D002725 ORTHO05D003279 4.9e-25 118.2 123 61.0
DCAR_027104 Daucus carota HOM05D002725 ORTHO05D003279 7.8e-23 110.9 93 64.5
Sopen01g038100 Solanum pennellii HOM05D002725 ORTHO05D003279 2.3e-22 109.4 117 57.3
Aqoxy1G03248 Aquilegia oxysepala HOM05D002725 ORTHO05D003279 5.1e-22 108.2 98 58.2
PGSC0003DMG400000023 Solanum tuberosum HOM05D002725 ORTHO05D003279 5.1e-22 108.2 117 57.3
Cre10.g424850 Chlamydomonas reinhardtii HOM05D002725 ORTHO05D003279 1.9e-21 106.3 119 55.5
Migut.N01594 Erythranthe guttata HOM05D002725 ORTHO05D003279 3.3e-21 105.5 141 49.6
FAN18G3093 Fragaria x ananassa HOM05D002725 ORTHO05D003279 7.3e-21 104.4 110 60.9
FAN13G3129 Fragaria x ananassa HOM05D002725 ORTHO05D003279 1.6e-20 103.2 115 53.0
Thhalv10003005m.g Eutrema salsugineum HOM05D002725 ORTHO05D003279 1.8e-19 99.8 125 52.0
CAN.G78.53 Capsicum annuum HOM05D002725 ORTHO05D003279 2.6e-18 95.9 101 58.4
Sed0011360 Sechium edule HOM05D002725 ORTHO05D003279 4.2e-16 88.6 117 47.0
PRCOL_00005735 Prasinoderma coloniale HOM05D002725 ORTHO05D003279 5.1e-14 81.6 132 43.9
MCO14G503 Micromonas commoda HOM05D002725 ORTHO05D003279 8.7e-14 80.9 128 44.5
ECA233G0293 Erigeron canadensis HOM05D002725 ORTHO05D003279 1.5e-13 80.1 80 60.0
AUR62024795 Chenopodium quinoa HOM05D002725 ORTHO05D003279 4.3e-13 78.6 67 58.2
Solyc01g094300.1 Solanum lycopersicum HOM05D002725 ORTHO05D003279 8.1e-12 74.3 94 54.3
TAR371G0609 Trochodendron aralioides HOM05D002725 ORTHO05D003279 1.4e-11 73.6 55 67.3
Rhsim12G0147600 Rhododendron simsii HOM05D002725 ORTHO05D003052 2.2e-09 66.2 56 57.1
QL06p007601 Quercus lobata HOM05D002725 ORTHO05D003279 4.9e-09 65.1 68 54.4
Haze_26190 Corylus avellana HOM05D002725 ORTHO05D003279 6.4e-09 64.7 124 37.1
FAN08G0728 Fragaria x ananassa HOM05D002725 ORTHO05D003279 1.1e-08 63.9 48 77.1
Rhsim02G0180300 Rhododendron simsii HOM05D002725 ORTHO05D003279 5.4e-08 61.6 54 57.4
Cfa022852 Carpinus fangiana HOM05D002725 ORTHO05D003279 1.2e-07 60.5 150 33.3
GSVIVG01037241001 Vitis vinifera HOM05D002725 ORTHO05D438117 3.5e-07 58.9 51 60.8
Oeu001743.1 Olea europaea HOM05D002725 ORTHO05D003279 5.1e-06 55.1 45 62.2
Sc14g0008580 Simmondsia chinensis HOM05D002725 ORTHO05D003279 6.6e-06 54.7 45 60.0


User provided reference genes

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