Gene: Solyc07g064070.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc07g064070.3
  • Transcript Identifier Solyc07g064070.3.1
  • Gene Type Coding gene
  • Location SL4.0ch07 : 66188369-66189730 : positive

Gene Family Information

  • ID HOM05D002725
  • #Genes/#Species 253/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc07g064070.3.1
  • uniprot A0A3Q7HI28
  • gene_id Solyc07g064070

Descriptions

  • Description U4/U6 small nuclear ribonucleoprotein Prp31-like (AHRD V3.3 *** A0A2I4E1L8_9ROSI)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000244
IEA
GOA Databasespliceosomal tri-snRNP complex assembly
GO:0000244
IEA
InterProspliceosomal tri-snRNP complex assembly
GO:0000398
IBA
IEA
GOA DatabasemRNA splicing, via spliceosome
GO:0000398
IEA
InterPromRNA splicing, via spliceosome

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046540
IEA
GOA DatabaseU4/U6 x U5 tri-snRNP complex
GO:0046540
IEA
InterProU4/U6 x U5 tri-snRNP complex
GO:0071011
IBA
GOA Databaseprecatalytic spliceosome
GO:0005687
IBA
GOA DatabaseU4 snRNP
GO:0097526
IBA
GOA Databasespliceosomal tri-snRNP complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR012976 NOSIC
IPR027105 U4/U6 small nuclear ribonucleoprotein Prp31
IPR019175 Prp31 C-terminal
IPR042239 Nop, C-terminal domain
IPR036070 Nop domain superfamily
IPR002687 Nop domain
Mapman id Description
16.2.1.3.3 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U4/U6 small nuclear ribonucleoprotein particle (snRNP).protein factor (PRPF31)