Gene: MELO3C012005.2

General Information

Structural Information

  • Species Cucumis melo
  • Gene Identifier MELO3C012005.2
  • Transcript Identifier MELO3C012005.2.1
  • Gene Type Coding gene
  • Location chr10 : 3354003-3356493 : positive

Gene Family Information

  • ID HOM05D002725
  • #Genes/#Species 253/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid MELO3C012005.2.1
  • uniprot A0A1S3BF76

Descriptions

  • Description U4/U6 small nuclear ribonucleoprotein Prp31-like
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000244
IEA
GOA Databasespliceosomal tri-snRNP complex assembly
GO:0000244
IEA
InterProspliceosomal tri-snRNP complex assembly
GO:0006346
ISO
PLAZA Integrative OrthologyDNA methylation-dependent heterochromatin assembly AT1G60170
GO:0070417
ISO
PLAZA Integrative Orthologycellular response to cold AT1G60170
GO:0009845
ISO
PLAZA Integrative Orthologyseed germination AT1G60170
GO:0009409
ISO
PLAZA Integrative Orthologyresponse to cold AT1G60170
GO:0000398
IEA
GOA DatabasemRNA splicing, via spliceosome
GO:0000398
IEA
InterPromRNA splicing, via spliceosome
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0006397
IEA
GOA DatabasemRNA processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G60170
GO:0003723
IEA
GOA DatabaseRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0015030
ISO
PLAZA Integrative OrthologyCajal body AT1G60170
GO:0046540
IEA
GOA DatabaseU4/U6 x U5 tri-snRNP complex
GO:0046540
IEA
InterProU4/U6 x U5 tri-snRNP complex
GO:0005634
IEA
GOA Databasenucleus
GO:0005681
IEA
GOA Databasespliceosomal complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR042239 Nop, C-terminal domain
IPR027105 U4/U6 small nuclear ribonucleoprotein Prp31
IPR036070 Nop domain superfamily
IPR012976 NOSIC
IPR019175 Prp31 C-terminal
IPR002687 Nop domain
Mapman id Description
16.2.1.3.3 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U4/U6 small nuclear ribonucleoprotein particle (snRNP).protein factor (PRPF31)