Gene: FAN19G1008

General Information

Structural Information

Species Fragaria x ananassa
Gene Identifier FAN19G1008
Transcript Identifier FAN19G1008.1
Gene Type Coding gene
Location Fvb1-4 : 9235086-9239580 : positive

Gene Family Information

Homologous GF
Orthologous GF

ID HOM05D002725
#Genes/#Species 253/98
Phylogenetic origin

ID ORTHO05D003279
#Genes/#Species 233/98
Phylogenetic origin

Gene Duplication Information

Block Duplication Block duplicate

Labels

Identifiers

id maker-Fvb1-4-augustus-gene-92.44.v1.0.a1
pacid 50556086

Descriptions

Short descriptions
Ortholog descriptions

Description PF01798//PF09785 - snoRNA binding domain, fibrillarin (Nop) // Prp31 C terminal domain (Prp31_C)

Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0000244	IEA	InterPro	spliceosomal tri-snRNP complex assembly
GO:0000398	IEA	InterPro	mRNA splicing, via spliceosome
GO:0009409	ISO	PLAZA Integrative Orthology	response to cold	AT1G60170
GO:0008380	ISO	PLAZA Integrative Orthology	RNA splicing	AT1G60170
GO:0009845	ISO	PLAZA Integrative Orthology	seed germination	AT1G60170
GO:0070417	ISO	PLAZA Integrative Orthology	cellular response to cold	AT1G60170
GO:0006346	ISO	PLAZA Integrative Orthology	DNA methylation-dependent heterochromatin assembly	AT1G60170

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005515	ISO	PLAZA Integrative Orthology	protein binding	AT1G60170

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0046540	IEA	InterPro	U4/U6 x U5 tri-snRNP complex
GO:0005634	ISO	PLAZA Integrative Orthology	nucleus	AT1G60170
GO:0015030	ISO	PLAZA Integrative Orthology	Cajal body	AT1G60170

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR012976	NOSIC
IPR002687	Nop domain
IPR019175	Prp31 C-terminal
IPR042239	Nop, C-terminal domain
IPR036070	Nop domain superfamily
IPR027105	U4/U6 small nuclear ribonucleoprotein Prp31

Mapman id	Description
16.2.1.3.3	RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U4/U6 small nuclear ribonucleoprotein particle (snRNP).protein factor (PRPF31)