Gene: Pp3c5_26190

General Information

Structural Information

  • Species Physcomitrium patens
  • Gene Identifier Pp3c5_26190
  • Transcript Identifier Pp3c5_26190V3.3
  • Gene Type Coding gene
  • Location Chr05 : 18500811-18504300 : positive

Gene Family Information

  • ID HOM05D002725
  • #Genes/#Species 253/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • name Pp3c5_26190V3.3
  • pacid 32953701
  • alias Pp1s154_55V6
  • alias Phpat.005G095700
  • alias Phypa_59230
  • uniprot A0A2K1KL53

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
IBA
IEA
GOA DatabasemRNA splicing, via spliceosome
GO:0000398
IEA
InterPromRNA splicing, via spliceosome
GO:0006346
ISO
PLAZA Integrative OrthologyDNA methylation-dependent heterochromatin assembly AT1G60170
GO:0070417
ISO
PLAZA Integrative Orthologycellular response to cold AT1G60170
GO:0009845
ISO
PLAZA Integrative Orthologyseed germination AT1G60170
GO:0009409
ISO
PLAZA Integrative Orthologyresponse to cold AT1G60170
GO:0000244
IEA
GOA Databasespliceosomal tri-snRNP complex assembly
GO:0000244
IEA
InterProspliceosomal tri-snRNP complex assembly
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0006397
IEA
GOA DatabasemRNA processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G60170
GO:0003723
IEA
GOA DatabaseRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0015030
ISO
PLAZA Integrative OrthologyCajal body AT1G60170
GO:0071011
IBA
GOA Databaseprecatalytic spliceosome
GO:0005687
IBA
GOA DatabaseU4 snRNP
GO:0097526
IBA
GOA Databasespliceosomal tri-snRNP complex
GO:0046540
IEA
GOA DatabaseU4/U6 x U5 tri-snRNP complex
GO:0046540
IEA
InterProU4/U6 x U5 tri-snRNP complex
GO:0005681
IEA
GOA Databasespliceosomal complex
GO:0005634
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR012976 NOSIC
IPR027105 U4/U6 small nuclear ribonucleoprotein Prp31
IPR002687 Nop domain
IPR019175 Prp31 C-terminal
IPR036070 Nop domain superfamily
IPR042239 Nop, C-terminal domain
Mapman id Description
16.2.1.3.3 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U4/U6 small nuclear ribonucleoprotein particle (snRNP).protein factor (PRPF31)