Gene: Sopen01g038100

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen01g038100
  • Transcript Identifier Sopen01g038100.1
  • Gene Type Coding gene
  • Location Spenn-ch01 : 96087584-96088949 : positive

Gene Family Information

  • ID HOM05D002725
  • #Genes/#Species 253/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen01g038100.1

Descriptions

  • Description embryo defective 1220 (emb1220) | CONTAINS InterPro DOMAIN/s: Pre-mRNA processing ribonucleoprotein, snoRNA-binding domain , NOSIC , Prp31 C-terminal | BEST Arabidopsis thaliana protein match is: unknown protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000244
IEA
InterProspliceosomal tri-snRNP complex assembly
GO:0000398
IEA
InterPromRNA splicing, via spliceosome

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046540
IEA
InterProU4/U6 x U5 tri-snRNP complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036070 Nop domain superfamily
IPR027105 U4/U6 small nuclear ribonucleoprotein Prp31
IPR019175 Prp31 C-terminal
IPR042239 Nop, C-terminal domain
IPR002687 Nop domain
Mapman id Description
16.2.1.3.3 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U4/U6 small nuclear ribonucleoprotein particle (snRNP).protein factor (PRPF31)