Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1050200 Malus domestica HOM05D003161 ORTHO05D005173 1.2e-258 896.0 462 100.0
MD12G1051100 Malus domestica HOM05D003161 ORTHO05D005173 8.2e-186 654.1 462 75.3
Prupe.7G085700 Prunus persica HOM05D003161 ORTHO05D005173 1.0e-175 620.5 465 71.4
RcHm_v2.0_Chr3g0478661 Rosa chinensis HOM05D003161 ORTHO05D005173 8.0e-165 584.3 466 67.4
FvH4_6g21470 Fragaria vesca HOM05D003161 ORTHO05D005173 1.8e-161 573.2 466 66.1
FAN09G2861 Fragaria x ananassa HOM05D003161 ORTHO05D005173 4.7e-149 531.9 466 63.5
FAN14G4107 Fragaria x ananassa HOM05D003161 ORTHO05D005173 3.1e-148 529.3 466 63.1
CANSAT64G2741 Cannabis sativa HOM05D003161 ORTHO05D005173 2.9e-146 522.7 466 61.2
QL07p025530 Quercus lobata HOM05D003161 ORTHO05D005173 2.9e-146 522.7 469 60.8
FAN02G0008 Fragaria x ananassa HOM05D003161 ORTHO05D005173 3.7e-146 522.3 465 62.2
FAN05G0820 Fragaria x ananassa HOM05D003161 ORTHO05D005173 1.4e-145 520.4 466 62.0
FAN05G2723 Fragaria x ananassa HOM05D003161 ORTHO05D005173 1.4e-145 520.4 466 62.0
Thecc.05G180200 Theobroma cacao HOM05D003161 ORTHO05D005173 1.6e-144 516.9 467 60.0
Atru.chr8.1220 Acer truncatum HOM05D003161 ORTHO05D005173 1.3e-143 513.8 466 59.2
Dinv25021 Davidia involucrata HOM05D003161 ORTHO05D005173 4.3e-142 508.8 458 59.6
Duzib128G1871 Durio zibethinus HOM05D003161 ORTHO05D005173 1.4e-140 503.8 467 58.7
Cfa020115 Carpinus fangiana HOM05D003161 ORTHO05D005173 1.8e-140 503.4 466 60.1
Lj2C361G9 Lonicera japonica HOM05D003161 ORTHO05D005173 1.8e-140 503.4 471 57.1
CiPaw.08G134900 Carya illinoinensis HOM05D003161 ORTHO05D005173 2.0e-139 500.0 464 59.5
TWI53G1521 Tripterygium wilfordii HOM05D003161 ORTHO05D005173 5.8e-139 498.4 468 58.3
Gohir.A09G130300 Gossypium hirsutum HOM05D003161 ORTHO05D005173 9.9e-139 497.7 465 58.7
Gorai.006G145100 Gossypium raimondii HOM05D003161 ORTHO05D005173 9.9e-139 497.7 467 58.5
COL.COLO4_29434 Corchorus olitorius HOM05D003161 ORTHO05D005173 2.2e-138 496.5 466 58.8
Gohir.D09G126300 Gossypium hirsutum HOM05D003161 ORTHO05D005173 1.1e-137 494.2 467 58.2
Potri.016G062600 Populus trichocarpa HOM05D003161 ORTHO05D005173 1.4e-137 493.8 464 58.0
TAR633G1132 Trochodendron aralioides HOM05D003161 ORTHO05D005173 3.2e-137 492.7 469 56.3
CSS0010787 Camellia sinensis var. sinensis HOM05D003161 ORTHO05D005173 7.1e-137 491.5 467 56.5
Manes.09G040300 Manihot esculenta HOM05D003161 ORTHO05D005173 6.6e-135 485.0 469 56.3
Lj5g0006535 Lotus japonicus HOM05D003161 ORTHO05D005173 6.2e-133 478.4 465 55.1
Sabra16G0064500 Salix brachista HOM05D003161 ORTHO05D005173 8.1e-133 478.0 485 55.1
Rhsim04G0093500 Rhododendron simsii HOM05D003161 ORTHO05D005173 2.4e-132 476.5 459 54.9
Haze_20072 Corylus avellana HOM05D003161 ORTHO05D005173 3.1e-132 476.1 547 51.6
Cpa.g.sc85.20 Carica papaya HOM05D003161 ORTHO05D005173 4.0e-132 475.7 466 56.4
GSVIVG01033430001 Vitis vinifera HOM05D003161 ORTHO05D005173 2.6e-131 473.0 458 58.3
CSS0043330 Camellia sinensis var. sinensis HOM05D003161 ORTHO05D005173 9.9e-131 471.1 467 55.2
Ciclev10013867m.g Citrus clementina HOM05D003161 ORTHO05D005173 4.9e-130 468.8 467 56.1
Aqoxy2G02393 Aquilegia oxysepala HOM05D003161 ORTHO05D005173 1.1e-129 467.6 468 52.8
Glyma.02G168900 Glycine max HOM05D003161 ORTHO05D005173 9.3e-129 464.5 455 54.1
Actinidia38605 Actinidia chinensis HOM05D003161 ORTHO05D005173 3.5e-128 462.6 468 53.4
Glyma.09G104000 Glycine max HOM05D003161 ORTHO05D005173 3.9e-127 459.1 464 52.6
Solyc03g051900.4 Solanum lycopersicum HOM05D003161 ORTHO05D005173 3.9e-127 459.1 457 53.2
Lalb_Chr21g0316111 Lupinus albus HOM05D003161 ORTHO05D005173 5.1e-127 458.8 465 54.6
PSO339G0479 Papaver somniferum HOM05D003161 ORTHO05D005173 1.1e-126 457.6 468 52.8
Hund19218 Selenicereus undatus HOM05D003161 ORTHO05D005173 1.5e-126 457.2 460 52.8
Sopen03g011350 Solanum pennellii HOM05D003161 ORTHO05D005173 5.6e-126 455.3 457 52.7
Ca_25942_v3 Cicer arietinum L. HOM05D003161 ORTHO05D005173 2.4e-124 449.9 456 53.1
PSO384G1659 Papaver somniferum HOM05D003161 ORTHO05D005173 2.4e-124 449.9 468 52.6
Hund19220 Selenicereus undatus HOM05D003161 ORTHO05D005173 2.4e-124 449.9 460 52.0
Medtr1g054710 Medicago truncatula HOM05D003161 ORTHO05D005173 3.1e-124 449.5 462 52.4
Psat6g109960 Pisum sativum HOM05D003161 ORTHO05D005173 3.1e-124 449.5 465 52.5
Sc19g0006250 Simmondsia chinensis HOM05D003161 ORTHO05D005173 1.2e-123 447.6 460 52.4
PGR004G2129 Punica granatum HOM05D003161 ORTHO05D005173 2.2e-122 443.4 462 53.5
Migut.K00013 Erythranthe guttata HOM05D003161 ORTHO05D005173 2.9e-122 443.0 468 51.9
SalBow1G2678 Salvia bowleyana HOM05D003161 ORTHO05D005173 3.8e-122 442.6 464 51.9
MSTRG.26730 Avicennia marina HOM05D003161 ORTHO05D005173 4.9e-122 442.2 457 52.7
Phvul.007G270000 Phaseolus vulgaris HOM05D003161 ORTHO05D005173 4.9e-122 442.2 465 52.0
VMungo0720G1738 Vigna mungo HOM05D003161 ORTHO05D005173 6.4e-122 441.8 463 51.8
Oeu046733.1 Olea europaea HOM05D003161 ORTHO05D005173 1.1e-121 441.0 464 53.9
DCAR_016871 Daucus carota HOM05D003161 ORTHO05D005173 1.4e-121 440.7 455 53.6
CAN.G479.45 Capsicum annuum HOM05D003161 ORTHO05D005173 5.4e-121 438.7 457 51.9
ECA238G1915 Erigeron canadensis HOM05D003161 ORTHO05D005173 9.3e-121 438.0 464 51.3
CARHR086520 Cardamine hirsuta HOM05D003161 ORTHO05D005173 2.8e-117 426.4 467 50.1
Eucgr.A02507 Eucalyptus grandis HOM05D003161 ORTHO05D005173 2.8e-117 426.4 465 51.6
CsaV3_4G031200 Cucumis sativus L. HOM05D003161 ORTHO05D005173 3.6e-117 426.0 466 51.7
HanXRQChr14g0457761 Helianthus annuus HOM05D003161 ORTHO05D005173 4.8e-117 425.6 462 50.9
Sp3g10190 Schrenkiella parvula HOM05D003161 ORTHO05D005173 1.1e-116 424.5 466 50.2
BraA01t04149Z Brassica rapa HOM05D003161 ORTHO05D005173 1.4e-116 424.1 461 50.1
MELO3C008994.2 Cucumis melo HOM05D003161 ORTHO05D005173 3.1e-116 422.9 457 52.1
BolC1t05277H Brassica oleracea HOM05D003161 ORTHO05D005173 4.0e-116 422.5 462 49.6
Nitab4.5_0001364g0070 Nicotiana tabacum HOM05D003161 ORTHO05D005173 9.0e-116 421.4 456 52.9
BcaC09g48184 Brassica carinata HOM05D003161 ORTHO05D005173 1.5e-115 420.6 470 48.9
AUR62041563 Chenopodium quinoa HOM05D003161 ORTHO05D005173 2.6e-115 419.9 457 48.6
AUR62026957 Chenopodium quinoa HOM05D003161 ORTHO05D005173 4.5e-115 419.1 457 49.0
Carub.0003s1130 Capsella rubella HOM05D003161 ORTHO05D005173 1.7e-114 417.2 466 48.9
Sed0016761 Sechium edule HOM05D003161 ORTHO05D005173 1.7e-114 417.2 466 50.9
AT3G11964 Arabidopsis thaliana HOM05D003161 ORTHO05D005173 2.9e-114 416.4 466 49.6
Thhalv10019877m.g Eutrema salsugineum HOM05D003161 ORTHO05D005173 3.8e-114 416.0 465 48.6
AL3G23570 Arabidopsis lyrata HOM05D003161 ORTHO05D005173 4.9e-114 415.6 465 49.2
vmacro09128 Vaccinium macrocarpon HOM05D003161 ORTHO05D005173 6.4e-114 415.2 481 49.3
THA.LOC104826779 Tarenaya hassleriana HOM05D003161 ORTHO05D005173 1.1e-113 414.5 474 48.5
EL10Ac7g16694 Beta vulgaris HOM05D003161 ORTHO05D005173 1.4e-113 414.1 461 47.5
BcaB04g21101 Brassica carinata HOM05D003161 ORTHO05D005173 4.2e-113 412.5 464 49.6
Peaxi162Scf00045g00223 Petunia axillaris HOM05D003161 ORTHO05D005173 6.0e-112 408.7 457 50.1
Aa31LG3G5540 Aethionema arabicum HOM05D003161 ORTHO05D005173 3.9e-111 406.0 466 47.2
BcaC05g29306 Brassica carinata HOM05D003161 ORTHO05D005173 6.7e-111 405.2 466 48.7
C05p55950 Brassica napus HOM05D003161 ORTHO05D005173 6.7e-111 405.2 466 48.7
BolC5t34262H Brassica oleracea HOM05D003161 ORTHO05D005173 6.7e-111 405.2 466 48.7
Lsat_1_v5_gn_2_58000 Lactuca sativa HOM05D003161 ORTHO05D005173 9.6e-110 401.4 466 47.0
Cc06_g23250 Coffea canephora HOM05D003161 ORTHO05D005173 4.8e-109 399.1 447 49.9
A05p37390 Brassica napus HOM05D003161 ORTHO05D005173 6.2e-109 398.7 465 47.1
Ah.15g091410 Amaranthus hybridus HOM05D003161 ORTHO05D005173 8.1e-109 398.3 452 46.2
BraA05t22538Z Brassica rapa HOM05D003161 ORTHO05D005173 4.0e-108 396.0 466 47.6
Aa31sc238G10 Aethionema arabicum HOM05D003161 ORTHO05D005173 2.6e-107 393.3 466 47.0
Nitab4.5_0000571g0110 Nicotiana tabacum HOM05D003161 ORTHO05D005173 3.4e-107 392.9 457 49.5
ATR0737G016 Amborella trichopoda HOM05D003161 ORTHO05D005173 8.4e-106 388.3 469 46.9
SGA_v2.0_scaffold274G46506 Striga asiatica HOM05D003161 ORTHO05D005173 1.6e-104 384.0 466 47.4
arahy.Tifrunner.gnm1.ann1.PL5CUR Arachis hypogaea HOM05D003161 ORTHO05D005173 1.5e-102 377.5 468 48.1
CDE02G2929 Ceratophyllum demersum HOM05D003161 ORTHO05D005173 1.8e-100 370.5 470 45.1
TPR.G14502 Trifolium pratense HOM05D003161 ORTHO05D005173 5.3e-100 369.0 502 44.8
HPP92_027317 Vanilla planifolia HOM05D003161 ORTHO05D005173 3.8e-98 362.8 459 43.8
ClCG04G001230 Citrullus lanatus HOM05D003161 ORTHO05D005173 2.5e-97 360.1 468 46.8
Zm00001eb302830 Zea mays HOM05D003161 ORTHO05D005173 2.3e-95 353.6 456 43.0
arahy.Tifrunner.gnm1.ann1.S31791 Arachis hypogaea HOM05D003161 ORTHO05D005173 3.6e-88 329.7 463 44.1
unitig_744.g24086 Utricularia gibba HOM05D003161 ORTHO05D005173 2.6e-86 323.6 461 42.3
SHI30029 Sapria himalayana HOM05D003161 ORTHO05D005173 7.4e-78 295.4 494 36.6
Pp3c4_30330 Physcomitrium patens HOM05D003161 ORTHO05D005173 3.8e-66 256.5 476 35.1
Mapoly0019s0051 Marchantia polymorpha HOM05D003161 ORTHO05D005173 1.4e-63 248.1 470 34.5
SMO137G0021 Selaginella moellendorffii HOM05D003161 ORTHO05D005173 4.1e-60 236.5 440 36.6
SEGI_01045 Sequoiadendron giganteum HOM05D003161 ORTHO05D005173 2.5e-57 227.3 384 37.5
CiPaw.08G134600 Carya illinoinensis HOM05D003161 ORTHO05D005173 3.2e-57 226.9 223 56.5
AagrBONN_evm.TU.Sc2ySwM_340.243 Anthoceros agrestis HOM05D003161 ORTHO05D005173 1.2e-56 224.9 459 32.2
CAN.G317.9 Capsicum annuum HOM05D003161 ORTHO05D005173 4.7e-48 196.4 294 42.9
Gohir.D08G094800 Gossypium hirsutum HOM05D003161 ORTHO05D019240 1.2e-43 181.8 179 58.1
CAN.G2759.1 Capsicum annuum HOM05D003161 ORTHO05D005173 2.0e-43 181.0 290 41.0
Hund18982 Selenicereus undatus HOM05D003161 ORTHO05D005173 7.8e-43 179.1 445 31.5
CAN.G1433.27 Capsicum annuum HOM05D003161 ORTHO05D005173 1.1e-36 158.7 450 31.6
CBR_g22381 Chara braunii HOM05D003161 ORTHO05D005173 2.7e-35 154.1 455 27.0
Os07g0203275 Oryza sativa ssp. japonica HOM05D003161 ORTHO05D005173 1.1e-31 142.1 177 44.1
Psat2g048720 Pisum sativum HOM05D003161 ORTHO05D002506 6.8e-31 139.4 165 46.7
SEGI_33580 Sequoiadendron giganteum HOM05D003161 ORTHO05D005173 9.2e-28 129.0 175 42.3
Gohir.D06G091175 Gossypium hirsutum HOM05D003161 ORTHO05D019240 1.0e-26 125.6 125 57.6
Gorai.011G237200 Gossypium raimondii HOM05D003161 ORTHO05D019240 1.2e-24 118.6 126 57.1
SEGI_22431 Sequoiadendron giganteum HOM05D003161 ORTHO05D005173 3.8e-21 107.1 110 49.1
Cre10.g428750 Chlamydomonas reinhardtii HOM05D003161 ORTHO05D005173 2.3e-18 97.8 438 24.7
Gohir.D10G054000 Gossypium hirsutum HOM05D003161 ORTHO05D047490 5.1e-18 96.7 85 63.5
Gorai.007G198500 Gossypium raimondii HOM05D003161 ORTHO05D019240 3.3e-17 94.0 95 55.8
Gorai.003G012400 Gossypium raimondii HOM05D003161 ORTHO05D047490 1.2e-16 92.0 85 61.2
Gohir.D03G037600 Gossypium hirsutum HOM05D001706 ORTHO05D019240 1.1e-15 89.0 52 78.8
HPP92_015878 Vanilla planifolia HOM05D003161 ORTHO05D019240 2.4e-15 87.8 181 34.3
Lsat_1_v5_gn_8_160881 Lactuca sativa HOM05D003161 ORTHO05D005173 6.4e-13 79.7 54 63.0
Lsat_1_v5_gn_6_82341 Lactuca sativa HOM05D003208 ORTHO05D013695 1.1e-12 79.0 76 47.4
Gohir.D12G128000 Gossypium hirsutum HOM05D003161 ORTHO05D036035 5.4e-12 76.6 56 73.2
Gohir.D01G126601 Gossypium hirsutum HOM05D003161 ORTHO05D036035 4.6e-11 73.6 56 69.6
Gorai.012G168200 Gossypium raimondii HOM05D003161 ORTHO05D036035 1.0e-10 72.4 56 69.6
Gorai.005G060000 Gossypium raimondii HOM05D003161 ORTHO05D019240 1.1e-07 62.4 57 66.7
Lsat_1_v5_gn_7_92520 Lactuca sativa HOM05D003161 ORTHO05D048398 9.9e-06 55.8 143 29.4


User provided reference genes

Program Settings