Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1050000 Malus domestica HOM05D003161 ORTHO05D005173 1.2e-137 493.0 235 100.0
MD12G1051100 Malus domestica HOM05D003161 ORTHO05D005173 6.0e-92 341.3 224 76.8
Prupe.7G085700 Prunus persica HOM05D003161 ORTHO05D005173 1.9e-85 319.7 219 71.7
RcHm_v2.0_Chr3g0478661 Rosa chinensis HOM05D003161 ORTHO05D005173 3.1e-72 275.8 221 64.3
FAN09G2861 Fragaria x ananassa HOM05D003161 ORTHO05D005173 2.5e-69 266.2 227 59.9
FAN05G2723 Fragaria x ananassa HOM05D003161 ORTHO05D005173 3.2e-69 265.8 227 59.5
FAN02G0008 Fragaria x ananassa HOM05D003161 ORTHO05D005173 1.6e-68 263.5 227 59.9
FAN14G4107 Fragaria x ananassa HOM05D003161 ORTHO05D005173 2.1e-68 263.1 227 59.9
FAN05G0820 Fragaria x ananassa HOM05D003161 ORTHO05D005173 6.1e-68 261.5 227 58.6
FvH4_6g21470 Fragaria vesca HOM05D003161 ORTHO05D005173 7.9e-68 261.2 227 59.0
TAR633G1132 Trochodendron aralioides HOM05D003161 ORTHO05D005173 1.1e-58 230.7 212 53.8
CANSAT64G2741 Cannabis sativa HOM05D003161 ORTHO05D005173 3.3e-58 229.2 208 56.7
Dinv25021 Davidia involucrata HOM05D003161 ORTHO05D005173 1.7e-57 226.9 221 52.0
Lj5g0006535 Lotus japonicus HOM05D003161 ORTHO05D005173 8.2e-57 224.6 220 52.3
Haze_20072 Corylus avellana HOM05D003161 ORTHO05D005173 1.1e-56 224.2 211 53.6
TWI53G1521 Tripterygium wilfordii HOM05D003161 ORTHO05D005173 3.1e-56 222.6 228 51.8
QL07p025530 Quercus lobata HOM05D003161 ORTHO05D005173 4.1e-56 222.2 224 51.3
Gohir.D09G126300 Gossypium hirsutum HOM05D003161 ORTHO05D005173 5.3e-56 221.9 221 49.3
Thecc.05G180200 Theobroma cacao HOM05D003161 ORTHO05D005173 6.9e-56 221.5 216 53.2
Gohir.A09G130300 Gossypium hirsutum HOM05D003161 ORTHO05D005173 2.6e-55 219.5 222 49.5
Potri.016G062600 Populus trichocarpa HOM05D003161 ORTHO05D005173 3.4e-55 219.2 222 51.4
CSS0043330 Camellia sinensis var. sinensis HOM05D003161 ORTHO05D005173 1.3e-54 217.2 207 52.2
Eucgr.A02507 Eucalyptus grandis HOM05D003161 ORTHO05D005173 1.7e-54 216.9 222 50.9
Gorai.006G145100 Gossypium raimondii HOM05D003161 ORTHO05D005173 2.2e-54 216.5 214 50.5
Sc19g0006250 Simmondsia chinensis HOM05D003161 ORTHO05D005173 2.2e-54 216.5 206 52.9
Cfa020115 Carpinus fangiana HOM05D003161 ORTHO05D005173 2.9e-54 216.1 227 49.3
Actinidia38605 Actinidia chinensis HOM05D003161 ORTHO05D005173 3.8e-54 215.7 220 49.1
COL.COLO4_29434 Corchorus olitorius HOM05D003161 ORTHO05D005173 5.0e-54 215.3 202 56.4
Rhsim04G0093500 Rhododendron simsii HOM05D003161 ORTHO05D005173 6.5e-54 214.9 213 50.2
THA.LOC104826779 Tarenaya hassleriana HOM05D003161 ORTHO05D005173 6.5e-54 214.9 221 52.5
Psat6g109960 Pisum sativum HOM05D003161 ORTHO05D005173 8.5e-54 214.5 220 50.5
Sabra16G0064600 Salix brachista HOM05D003161 ORTHO05D005173 1.1e-53 214.2 229 51.5
Ciclev10013867m.g Citrus clementina HOM05D003161 ORTHO05D005173 2.5e-53 213.0 201 55.7
vmacro09128 Vaccinium macrocarpon HOM05D003161 ORTHO05D005173 3.2e-53 212.6 212 48.1
Duzib128G1871 Durio zibethinus HOM05D003161 ORTHO05D005173 5.5e-53 211.8 222 49.5
GSVIVG01033430001 Vitis vinifera HOM05D003161 ORTHO05D005173 5.5e-53 211.8 218 49.5
Cpa.g.sc85.20 Carica papaya HOM05D003161 ORTHO05D005173 9.4e-53 211.1 224 48.2
CSS0010787 Camellia sinensis var. sinensis HOM05D003161 ORTHO05D005173 2.1e-52 209.9 207 51.7
Hund19220 Selenicereus undatus HOM05D003161 ORTHO05D005173 2.7e-52 209.5 212 52.8
Hund19218 Selenicereus undatus HOM05D003161 ORTHO05D005173 6.1e-52 208.4 217 51.2
Medtr1g054710 Medicago truncatula HOM05D003161 ORTHO05D005173 7.9e-52 208.0 213 51.2
Manes.09G040300 Manihot esculenta HOM05D003161 ORTHO05D005173 1.0e-51 207.6 201 52.2
TPR.G14502 Trifolium pratense HOM05D003161 ORTHO05D005173 3.0e-51 206.1 212 50.0
Ah.15g091410 Amaranthus hybridus HOM05D003161 ORTHO05D005173 5.1e-51 205.3 215 47.9
CiPaw.08G134900 Carya illinoinensis HOM05D003161 ORTHO05D005173 6.7e-51 204.9 218 48.6
CSS0040264 Camellia sinensis var. sinensis HOM05D003161 ORTHO05D005173 1.1e-50 204.1 194 53.6
Glyma.09G104000 Glycine max HOM05D003161 ORTHO05D005173 3.3e-50 202.6 213 47.4
arahy.Tifrunner.gnm1.ann1.S31791 Arachis hypogaea HOM05D003161 ORTHO05D005173 4.4e-50 202.2 214 49.1
MSTRG.26730 Avicennia marina HOM05D003161 ORTHO05D005173 4.4e-50 202.2 206 51.5
Ca_25942_v3 Cicer arietinum L. HOM05D003161 ORTHO05D005173 4.4e-50 202.2 211 50.2
PGR004G2129 Punica granatum HOM05D003161 ORTHO05D005173 9.7e-50 201.1 205 52.7
Atru.chr8.1220 Acer truncatum HOM05D003161 ORTHO05D005173 1.3e-49 200.7 202 51.0
ECA238G1915 Erigeron canadensis HOM05D003161 ORTHO05D005173 1.7e-49 200.3 192 52.1
DCAR_016871 Daucus carota HOM05D003161 ORTHO05D005173 4.8e-49 198.7 212 46.7
Lalb_Chr21g0316111 Lupinus albus HOM05D003161 ORTHO05D005173 8.2e-49 198.0 218 49.5
arahy.Tifrunner.gnm1.ann1.PL5CUR Arachis hypogaea HOM05D003161 ORTHO05D005173 1.1e-48 197.6 214 48.6
Glyma.02G168900 Glycine max HOM05D003161 ORTHO05D005173 1.1e-48 197.6 195 50.8
Lj2C361G9 Lonicera japonica HOM05D003161 ORTHO05D005173 3.1e-48 196.1 191 51.3
Phvul.007G270000 Phaseolus vulgaris HOM05D003161 ORTHO05D005173 3.1e-48 196.1 222 45.0
EL10Ac7g16694 Beta vulgaris HOM05D003161 ORTHO05D005173 7.0e-48 194.9 206 48.1
Carub.0003s1130 Capsella rubella HOM05D003161 ORTHO05D005173 7.0e-48 194.9 214 47.2
Cc06_g23250 Coffea canephora HOM05D003161 ORTHO05D005173 2.0e-47 193.4 208 49.5
MELO3C008994.2 Cucumis melo HOM05D003161 ORTHO05D005173 2.6e-47 193.0 197 52.3
SalBow1G2678 Salvia bowleyana HOM05D003161 ORTHO05D005173 2.6e-47 193.0 206 48.5
AUR62041563 Chenopodium quinoa HOM05D003161 ORTHO05D005173 4.5e-47 192.2 248 45.6
Aa31sc238G10 Aethionema arabicum HOM05D003161 ORTHO05D005173 5.9e-47 191.8 223 45.3
AL3G23570 Arabidopsis lyrata HOM05D003161 ORTHO05D005173 5.9e-47 191.8 221 45.7
VMungo0720G1738 Vigna mungo HOM05D003161 ORTHO05D005173 1.3e-46 190.7 220 45.9
AT3G11964 Arabidopsis thaliana HOM05D003161 ORTHO05D005173 2.2e-46 189.9 214 46.3
PSO339G0479 Papaver somniferum HOM05D003161 ORTHO05D005173 2.2e-46 189.9 224 44.2
Migut.K00013 Erythranthe guttata HOM05D003161 ORTHO05D005173 2.9e-46 189.5 229 42.8
PSO384G1659 Papaver somniferum HOM05D003161 ORTHO05D005173 1.5e-45 187.2 224 43.3
CsaV3_4G031200 Cucumis sativus L. HOM05D003161 ORTHO05D005173 1.9e-45 186.8 210 48.1
Sp3g10190 Schrenkiella parvula HOM05D003161 ORTHO05D005173 1.9e-45 186.8 214 45.8
Lsat_1_v5_gn_2_58000 Lactuca sativa HOM05D003161 ORTHO05D005173 2.5e-45 186.4 186 48.9
Oeu046733.1 Olea europaea HOM05D003161 ORTHO05D005173 3.2e-45 186.0 211 48.8
BraA01t04149Z Brassica rapa HOM05D003161 ORTHO05D005173 9.4e-45 184.5 238 43.3
BcaC09g48184 Brassica carinata HOM05D003161 ORTHO05D005173 2.1e-44 183.3 214 46.7
Peaxi162Scf00045g00223 Petunia axillaris HOM05D003161 ORTHO05D005173 2.7e-44 183.0 196 51.0
Sopen03g011350 Solanum pennellii HOM05D003161 ORTHO05D005173 3.6e-44 182.6 189 52.4
BcaC05g29306 Brassica carinata HOM05D003161 ORTHO05D005173 4.7e-44 182.2 211 46.0
CAN.G317.9 Capsicum annuum HOM05D003161 ORTHO05D005173 4.7e-44 182.2 182 53.3
CAN.G479.45 Capsicum annuum HOM05D003161 ORTHO05D005173 6.1e-44 181.8 182 52.7
Solyc03g051900.4 Solanum lycopersicum HOM05D003161 ORTHO05D005173 6.1e-44 181.8 189 51.9
Nitab4.5_0000571g0110 Nicotiana tabacum HOM05D003161 ORTHO05D005173 8.0e-44 181.4 189 53.4
BolC1t05277H Brassica oleracea HOM05D003161 ORTHO05D005173 1.4e-43 180.6 214 46.3
Thhalv10019877m.g Eutrema salsugineum HOM05D003161 ORTHO05D005173 1.4e-43 180.6 204 48.0
Nitab4.5_0001364g0070 Nicotiana tabacum HOM05D003161 ORTHO05D005173 4.0e-43 179.1 189 52.9
C05p55950 Brassica napus HOM05D003161 ORTHO05D005173 6.7e-43 178.3 204 47.1
BolC5t34262H Brassica oleracea HOM05D003161 ORTHO05D005173 6.7e-43 178.3 204 47.1
AUR62026957 Chenopodium quinoa HOM05D003161 ORTHO05D005173 6.7e-43 178.3 248 43.1
SGA_v2.0_scaffold274G46506 Striga asiatica HOM05D003161 ORTHO05D005173 6.7e-43 178.3 206 47.1
HanXRQChr14g0457761 Helianthus annuus HOM05D003161 ORTHO05D005173 8.8e-43 177.9 190 46.8
PGSC0003DMG400008644 Solanum tuberosum HOM05D003161 ORTHO05D005173 1.1e-42 177.6 184 53.3
Aqoxy2G02393 Aquilegia oxysepala HOM05D003161 ORTHO05D005173 2.0e-42 176.8 208 45.2
CDE02G2929 Ceratophyllum demersum HOM05D003161 ORTHO05D005173 3.7e-41 172.6 206 46.6
A05p37390 Brassica napus HOM05D003161 ORTHO05D005173 4.8e-41 172.2 218 44.5
Zm00001eb302830 Zea mays HOM05D003161 ORTHO05D005173 1.8e-40 170.2 203 42.9
ClCG04G001230 Citrullus lanatus HOM05D003161 ORTHO05D005173 2.4e-40 169.9 211 44.5
BraA05t22538Z Brassica rapa HOM05D003161 ORTHO05D005173 4.1e-40 169.1 211 45.5
BcaB04g21101 Brassica carinata HOM05D003161 ORTHO05D005173 9.1e-40 167.9 195 48.2
CARHR086520 Cardamine hirsuta HOM05D003161 ORTHO05D005173 1.3e-38 164.1 214 43.0
HPP92_027317 Vanilla planifolia HOM05D003161 ORTHO05D005173 2.9e-38 162.9 203 43.8
ATR0737G016 Amborella trichopoda HOM05D003161 ORTHO05D005173 6.5e-38 161.8 211 39.3
SHI30029 Sapria himalayana HOM05D003161 ORTHO05D005173 2.5e-37 159.8 207 43.0
Sed0016761 Sechium edule HOM05D003161 ORTHO05D005173 3.2e-37 159.5 190 47.4
Hund18982 Selenicereus undatus HOM05D003161 ORTHO05D005173 5.7e-34 148.7 196 47.4
SEGI_01045 Sequoiadendron giganteum HOM05D003161 ORTHO05D005173 1.6e-28 130.6 178 41.0
Os07g0203300 Oryza sativa ssp. japonica HOM05D003161 ORTHO05D005173 2.0e-26 123.6 124 48.4
Ah.15g091660 Amaranthus hybridus HOM05D003161 ORTHO05D005173 9.8e-26 121.3 118 50.0
Pp3c4_30330 Physcomitrium patens HOM05D003161 ORTHO05D005173 1.1e-24 117.9 211 34.1
SMO137G0021 Selaginella moellendorffii HOM05D003161 ORTHO05D005173 2.7e-23 113.2 188 37.8
Mapoly0019s0051 Marchantia polymorpha HOM05D003161 ORTHO05D005173 1.0e-22 111.3 193 37.8
CAN.G2759.1 Capsicum annuum HOM05D003161 ORTHO05D005173 9.5e-21 104.8 168 41.7
Lsat_1_v5_gn_5_134021 Lactuca sativa HOM05D003161 ORTHO05D005173 9.5e-21 104.8 82 58.5
AagrBONN_evm.TU.Sc2ySwM_340.243 Anthoceros agrestis HOM05D003161 ORTHO05D005173 2.3e-19 100.1 190 31.6
Aa31LG3G5540 Aethionema arabicum HOM05D003161 ORTHO05D005173 9.8e-18 94.7 223 30.0
HanXRQChr13g0388021 Helianthus annuus HOM05D003161 ORTHO05D005173 4.9e-17 92.4 62 66.1
unitig_744.g24086 Utricularia gibba HOM05D003161 ORTHO05D005173 1.4e-11 74.3 208 26.0
HPP92_015877 Vanilla planifolia HOM05D003161 ORTHO05D005173 1.2e-10 71.2 103 38.8
Aqoxy2G00460 Aquilegia oxysepala HOM05D005887 ORTHO05D007694 2.6e-10 70.1 44 70.5
SMO200G0255 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 3.7e-09 66.2 168 29.8
SMO111G0100 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 3.5e-07 59.7 172 26.2


User provided reference genes

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