Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1034200 Malus domestica HOM05D005290 ORTHO05D006040 9.9e-32 139.4 67 100.0
Sc01g0002020 Simmondsia chinensis HOM05D005290 ORTHO05D006040 1.1e-11 72.8 40 90.0
Hund27128 Selenicereus undatus HOM05D005290 ORTHO05D006040 7.4e-11 70.1 40 85.0
Hund27133 Selenicereus undatus HOM05D005290 ORTHO05D006040 7.4e-11 70.1 40 85.0
Prupe.1G555900 Prunus persica HOM05D005290 ORTHO05D006040 1.3e-10 69.3 40 85.0
Dinv41762 Davidia involucrata HOM05D005290 ORTHO05D006040 1.6e-10 68.9 40 85.0
Nn1g08386 Nelumbo nucifera HOM05D005290 ORTHO05D006040 1.6e-10 68.9 40 82.5
TAR381G0263 Trochodendron aralioides HOM05D005290 ORTHO05D006040 1.6e-10 68.9 40 85.0
CSS0003964 Camellia sinensis var. sinensis HOM05D005290 ORTHO05D006040 6.2e-10 67.0 40 82.5
CSS0033470 Camellia sinensis var. sinensis HOM05D005290 ORTHO05D006040 6.2e-10 67.0 40 82.5
CiPaw.07G235300 Carya illinoinensis HOM05D005290 ORTHO05D006040 6.2e-10 67.0 40 82.5
FvH4_5g31560 Fragaria vesca HOM05D005290 ORTHO05D006040 6.2e-10 67.0 40 82.5
FAN18G4563 Fragaria x ananassa HOM05D005290 ORTHO05D006040 6.2e-10 67.0 40 82.5
GSVIVG01026715001 Vitis vinifera HOM05D005290 ORTHO05D006040 6.2e-10 67.0 40 82.5
Cfa012974 Carpinus fangiana HOM05D005290 ORTHO05D006040 8.2e-10 66.6 40 80.0
Lj7A285T59 Lonicera japonica HOM05D005290 ORTHO05D006040 8.2e-10 66.6 38 84.2
Rhsim12G0006000 Rhododendron simsii HOM05D005290 ORTHO05D006040 1.1e-09 66.2 40 82.5
Aqoxy6G00108 Aquilegia oxysepala HOM05D005290 ORTHO05D006040 1.4e-09 65.9 52 63.5
AUR62004596 Chenopodium quinoa HOM05D005290 ORTHO05D006040 1.4e-09 65.9 40 80.0
AUR62023548 Chenopodium quinoa HOM05D005290 ORTHO05D006040 1.4e-09 65.9 40 80.0
TWI59G0173 Tripterygium wilfordii HOM05D005290 ORTHO05D006040 1.4e-09 65.9 40 82.5
EL10Ac1g00141 Beta vulgaris HOM05D005290 ORTHO05D006040 1.8e-09 65.5 40 80.0
Lalb_Chr07g0189291 Lupinus albus HOM05D005290 ORTHO05D006040 1.8e-09 65.5 40 80.0
ClCG08G002460 Citrullus lanatus HOM05D005290 ORTHO05D006040 2.4e-09 65.1 40 75.0
CsaV3_6G002720 Cucumis sativus L. HOM05D005290 ORTHO05D006040 2.4e-09 65.1 40 75.0
FAN04G2711 Fragaria x ananassa HOM05D005290 ORTHO05D006040 2.4e-09 65.1 40 80.0
Sabra19G0089500 Salix brachista HOM05D005290 ORTHO05D006040 2.4e-09 65.1 40 80.0
arahy.Tifrunner.gnm1.ann1.QF83TB Arachis hypogaea HOM05D005290 ORTHO05D006040 3.1e-09 64.7 64 53.1
CANSAT80G2649 Cannabis sativa HOM05D005290 ORTHO05D006040 3.1e-09 64.7 40 80.0
Cc10_g09470 Coffea canephora HOM05D005290 ORTHO05D006040 3.1e-09 64.7 40 80.0
Glyma.04G254900 Glycine max HOM05D005290 ORTHO05D006040 3.1e-09 64.7 40 77.5
Hma1.2p1_0004F.1_g003900 Hydrangea macrophylla HOM05D005290 ORTHO05D006040 3.1e-09 64.7 40 80.0
MSTRG.25478 Avicennia marina HOM05D005290 ORTHO05D006040 4.0e-09 64.3 40 75.0
MELO3C025009.2 Cucumis melo HOM05D005290 ORTHO05D006040 4.0e-09 64.3 40 75.0
DCAR_017435 Daucus carota HOM05D005290 ORTHO05D006040 4.0e-09 64.3 40 77.5
Lj3g0002821 Lotus japonicus HOM05D005290 ORTHO05D006040 4.0e-09 64.3 40 77.5
RcHm_v2.0_Chr3g0494621 Rosa chinensis HOM05D005290 ORTHO05D006040 4.0e-09 64.3 40 80.0
AL6G42870 Arabidopsis lyrata HOM05D005290 ORTHO05D006040 5.3e-09 63.9 40 80.0
Gohir.A13G118900 Gossypium hirsutum HOM05D005290 ORTHO05D006040 5.3e-09 63.9 40 77.5
Potri.019G078700 Populus trichocarpa HOM05D005290 ORTHO05D006040 5.3e-09 63.9 40 77.5
Sed0025467 Sechium edule HOM05D005290 ORTHO05D006040 5.3e-09 63.9 40 75.0
Atru.chr13.2376 Acer truncatum HOM05D005290 ORTHO05D006040 6.9e-09 63.5 40 77.5
arahy.Tifrunner.gnm1.ann1.0B02IH Arachis hypogaea HOM05D005290 ORTHO05D006040 6.9e-09 63.5 40 75.0
COL.COLO4_24646 Corchorus olitorius HOM05D005290 ORTHO05D006040 6.9e-09 63.5 40 77.5
Dinv08418 Davidia involucrata HOM05D005290 ORTHO05D006040 6.9e-09 63.5 38 81.6
Eucgr.F02988 Eucalyptus grandis HOM05D005290 ORTHO05D006040 6.9e-09 63.5 40 77.5
Gohir.D13G122700 Gossypium hirsutum HOM05D005290 ORTHO05D006040 6.9e-09 63.5 40 77.5
Gorai.013G137700 Gossypium raimondii HOM05D005290 ORTHO05D006040 6.9e-09 63.5 40 77.5
Phvul.005G002000 Phaseolus vulgaris HOM05D005290 ORTHO05D006040 6.9e-09 63.5 40 77.5
Rhsim03G0213900 Rhododendron simsii HOM05D005290 ORTHO05D006040 6.9e-09 63.5 40 77.5
RhsimUnG0011300 Rhododendron simsii HOM05D005290 ORTHO05D006040 6.9e-09 63.5 40 77.5
RcHm_v2.0_Chr7g0226931 Rosa chinensis HOM05D005290 ORTHO05D006040 9.0e-09 63.2 40 77.5
PGR042G0738 Punica granatum HOM05D005290 ORTHO05D006040 1.2e-08 62.8 40 75.0
SalBow7G4073 Salvia bowleyana HOM05D005290 ORTHO05D006040 1.2e-08 62.8 40 75.0
vmacro00977 Vaccinium macrocarpon HOM05D005290 ORTHO05D006040 1.2e-08 62.8 40 80.0
VMungo1080G0256 Vigna mungo HOM05D005290 ORTHO05D006040 1.2e-08 62.8 40 75.0
Ah.05g178620 Amaranthus hybridus HOM05D005290 ORTHO05D006040 1.5e-08 62.4 40 75.0
PSO170G3966 Papaver somniferum HOM05D005290 ORTHO05D006040 1.5e-08 62.4 40 72.5
PSO782G1799 Papaver somniferum HOM05D005290 ORTHO05D006040 1.5e-08 62.4 40 72.5
Aa31LG9G14750 Aethionema arabicum HOM05D005290 ORTHO05D006040 2.0e-08 62.0 40 77.5
CAN.G982.5 Capsicum annuum HOM05D005290 ORTHO05D006040 2.0e-08 62.0 40 72.5
Lsat_1_v5_gn_1_31200 Lactuca sativa HOM05D005290 ORTHO05D006040 2.0e-08 62.0 40 77.5
Manes.02G198901 Manihot esculenta HOM05D005290 ORTHO05D006040 2.0e-08 62.0 40 72.5
SHI12388 Sapria himalayana HOM05D005290 ORTHO05D006040 2.0e-08 62.0 40 75.0
BcaB01g02803 Brassica carinata HOM05D005290 ORTHO05D006040 2.6e-08 61.6 40 77.5
BcaC01g04730 Brassica carinata HOM05D005290 ORTHO05D006040 2.6e-08 61.6 40 77.5
A03p28460 Brassica napus HOM05D005290 ORTHO05D006040 2.6e-08 61.6 40 77.5
C03p34390 Brassica napus HOM05D005290 ORTHO05D006040 2.6e-08 61.6 40 77.5
BolC3t15749H Brassica oleracea HOM05D005290 ORTHO05D006040 2.6e-08 61.6 40 77.5
BraA03t12051Z Brassica rapa HOM05D005290 ORTHO05D006040 2.6e-08 61.6 40 77.5
Migut.C01329 Erythranthe guttata HOM05D005290 ORTHO05D006040 2.6e-08 61.6 40 75.0
MBI03_g18676_MAGBIO Magnolia biondii HOM05D005290 ORTHO05D006040 2.6e-08 61.6 40 75.0
Medtr3g005810 Medicago truncatula HOM05D005290 ORTHO05D006040 2.6e-08 61.6 40 72.5
Psat1g008120 Pisum sativum HOM05D005290 ORTHO05D006040 2.6e-08 61.6 40 72.5
Sp6g08400 Schrenkiella parvula HOM05D005290 ORTHO05D006040 2.6e-08 61.6 40 77.5
Ca_13983_v3 Cicer arietinum L. HOM05D005290 ORTHO05D006040 3.4e-08 61.2 40 70.0
Ciclev10019018m.g Citrus clementina HOM05D005290 ORTHO05D006040 3.4e-08 61.2 40 75.0
Dinv16440 Davidia involucrata HOM05D005290 ORTHO05D006040 3.4e-08 61.2 40 77.5
Thecc.08G192800 Theobroma cacao HOM05D005290 ORTHO05D006040 3.4e-08 61.2 40 75.0
ECA232G1421 Erigeron canadensis HOM05D005290 ORTHO05D006040 4.5e-08 60.8 40 75.0
TPR.G25526 Trifolium pratense HOM05D005290 ORTHO05D006040 4.5e-08 60.8 40 72.5
HanXRQChr09g0266431 Helianthus annuus HOM05D005290 ORTHO05D006040 5.8e-08 60.5 40 72.5
Lsat_1_v5_gn_2_95080 Lactuca sativa HOM05D005290 ORTHO05D006040 5.8e-08 60.5 44 70.5
Zm00001eb362590 Zea mays HOM05D005290 ORTHO05D006040 7.6e-08 60.1 40 70.0
CARHR260140 Cardamine hirsuta HOM05D005290 ORTHO05D006040 1.0e-07 59.7 40 75.0
Cpa.g.sc50.54 Carica papaya HOM05D005290 ORTHO05D006040 1.0e-07 59.7 40 75.0
HPP92_004622 Vanilla planifolia HOM05D005290 ORTHO05D006040 1.0e-07 59.7 40 72.5
AT4G09140 Arabidopsis thaliana HOM05D005290 ORTHO05D006040 1.3e-07 59.3 40 75.0
Thhalv10028465m.g Eutrema salsugineum HOM05D005290 ORTHO05D006040 1.3e-07 59.3 40 75.0
Solyc04g045660.4 Solanum lycopersicum HOM05D005290 ORTHO05D006040 1.3e-07 59.3 40 70.0
Sopen04g017660 Solanum pennellii HOM05D005290 ORTHO05D006040 1.3e-07 59.3 40 70.0
Carub.0006s2769 Capsella rubella HOM05D005290 ORTHO05D006040 1.7e-07 58.9 38 76.3
Lsat_1_v5_gn_8_103720 Lactuca sativa HOM05D005290 ORTHO05D006040 1.7e-07 58.9 40 72.5
Nitab4.5_0006434g0010 Nicotiana tabacum HOM05D005290 ORTHO05D006040 2.2e-07 58.5 41 73.2
SGA_v2.0_scaffold118G32566 Striga asiatica HOM05D005290 ORTHO05D006040 2.2e-07 58.5 40 70.0
unitig_26.g9865 Utricularia gibba HOM05D005290 ORTHO05D006040 2.2e-07 58.5 40 65.0
ATR1136G132 Amborella trichopoda HOM05D005290 ORTHO05D006040 2.9e-07 58.2 40 70.0
ATR1136G152 Amborella trichopoda HOM05D005290 ORTHO05D006040 2.9e-07 58.2 40 70.0
Os01g0958900 Oryza sativa ssp. japonica HOM05D005290 ORTHO05D006040 2.9e-07 58.2 40 67.5
Nitab4.5_0008566g0030 Nicotiana tabacum HOM05D005290 ORTHO05D006040 2.5e-06 55.1 41 68.3
Peaxi162Scf00076g10023 Petunia axillaris HOM05D005290 ORTHO05D006040 2.5e-06 55.1 39 69.2
MD12G1033300 Malus domestica HOM05D005290 ORTHO05D006040 4.2e-06 54.3 34 76.5
Lsat_1_v5_gn_2_103881 Lactuca sativa HOM05D005290 ORTHO05D006040 5.5e-06 53.9 35 74.3


User provided reference genes

Program Settings