Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1254400 Malus domestica HOM05D003408 ORTHO05D003949 1.5e-30 135.6 70 100.0
MD17G1246800 Malus domestica HOM05D003408 ORTHO05D003949 4.4e-14 80.9 72 63.9
Prupe.3G144200 Prunus persica HOM05D003408 ORTHO05D003949 1.1e-12 76.3 72 58.3
Prupe.3G144300 Prunus persica HOM05D003408 ORTHO05D003949 1.1e-12 76.3 72 56.9
Prupe.3G144500 Prunus persica HOM05D003408 ORTHO05D003949 4.1e-12 74.3 72 56.9
Actinidia09095 Actinidia chinensis HOM05D003408 ORTHO05D003949 1.2e-11 72.8 72 58.3
Actinidia19978 Actinidia chinensis HOM05D003408 ORTHO05D003949 3.5e-11 71.2 72 56.9
CSS0019288 Camellia sinensis var. sinensis HOM05D003408 ORTHO05D003949 3.5e-11 71.2 72 55.6
COL.COLO4_06083 Corchorus olitorius HOM05D003408 ORTHO05D003949 5.9e-11 70.5 72 52.8
Rhsim13G0030700 Rhododendron simsii HOM05D003408 ORTHO05D003949 5.9e-11 70.5 72 55.6
TAR365G0658 Trochodendron aralioides HOM05D003408 ORTHO05D003949 2.2e-10 68.6 77 49.4
MD05G1206300 Malus domestica HOM05D003408 ORTHO05D003949 3.8e-10 67.8 72 52.8
Thecc.01G268100 Theobroma cacao HOM05D003408 ORTHO05D003949 3.8e-10 67.8 77 51.9
Actinidia27522 Actinidia chinensis HOM05D003408 ORTHO05D003949 5.0e-10 67.4 68 57.4
Nn3g19497 Nelumbo nucifera HOM05D003408 ORTHO05D003949 5.0e-10 67.4 72 54.2
MBI04_g08413_MAGBIO Magnolia biondii HOM05D003408 ORTHO05D003949 1.1e-09 66.2 72 52.8
MD10G1193300 Malus domestica HOM05D003408 ORTHO05D003949 1.1e-09 66.2 72 51.4
Manes.01G202100 Manihot esculenta HOM05D003408 ORTHO05D003949 1.1e-09 66.2 71 52.1
Psat3g061160 Pisum sativum HOM05D003408 ORTHO05D003949 1.1e-09 66.2 77 50.6
THA.LOC104824174 Tarenaya hassleriana HOM05D003408 ORTHO05D003949 1.1e-09 66.2 72 52.8
vmacro02625 Vaccinium macrocarpon HOM05D003408 ORTHO05D003949 1.1e-09 66.2 72 51.4
Nn1g02538 Nelumbo nucifera HOM05D003408 ORTHO05D003949 1.5e-09 65.9 72 52.8
Prupe.8G232700 Prunus persica HOM05D003408 ORTHO05D003949 1.5e-09 65.9 72 51.4
Eucgr.G01098 Eucalyptus grandis HOM05D003408 ORTHO05D003949 1.9e-09 65.5 77 51.9
Potri.002G045700 Populus trichocarpa HOM05D003408 ORTHO05D003949 1.9e-09 65.5 71 50.7
Sabra05G0166900 Salix brachista HOM05D003408 ORTHO05D003949 2.5e-09 65.1 71 50.7
Aqoxy5G00369 Aquilegia oxysepala HOM05D003408 ORTHO05D003949 3.2e-09 64.7 72 48.6
CiPaw.03G256900 Carya illinoinensis HOM05D003408 ORTHO05D003949 3.2e-09 64.7 72 52.8
Potri.005G217700 Populus trichocarpa HOM05D003408 ORTHO05D003949 3.2e-09 64.7 71 50.7
TPR.G32810 Trifolium pratense HOM05D003408 ORTHO05D003949 3.2e-09 64.7 77 49.4
arahy.Tifrunner.gnm1.ann1.8QW0YW Arachis hypogaea HOM05D003408 ORTHO05D003949 4.2e-09 64.3 77 50.6
Ciclev10021275m.g Citrus clementina HOM05D003408 ORTHO05D003949 4.2e-09 64.3 72 48.6
FvH4_6g10830 Fragaria vesca HOM05D003408 ORTHO05D003949 4.2e-09 64.3 72 48.6
FAN14G3927 Fragaria x ananassa HOM05D003408 ORTHO05D003949 4.2e-09 64.3 72 48.6
Ca_26406_v3 Cicer arietinum L. HOM05D003408 ORTHO05D003949 5.5e-09 63.9 77 49.4
Lj2C1160T10 Lonicera japonica HOM05D003408 ORTHO05D003949 5.5e-09 63.9 72 50.0
Sabra02G0036600 Salix brachista HOM05D003408 ORTHO05D003949 5.5e-09 63.9 71 50.7
GSVIVG01000716001 Vitis vinifera HOM05D003408 ORTHO05D003949 5.5e-09 63.9 77 49.4
CANSAT01G2906 Cannabis sativa HOM05D003408 ORTHO05D003949 7.2e-09 63.5 77 48.1
Dinv34563 Davidia involucrata HOM05D003408 ORTHO05D003949 7.2e-09 63.5 70 52.9
Duzib138G1882 Durio zibethinus HOM05D003408 ORTHO05D003949 7.2e-09 63.5 72 50.0
Lalb_Chr01g0019901 Lupinus albus HOM05D003408 ORTHO05D003949 7.2e-09 63.5 77 49.4
TAR362G0898 Trochodendron aralioides HOM05D003408 ORTHO05D003949 7.2e-09 63.5 77 48.1
arahy.Tifrunner.gnm1.ann1.JTL6YC Arachis hypogaea HOM05D003408 ORTHO05D003949 9.4e-09 63.2 77 49.4
Gohir.D08G206600 Gossypium hirsutum HOM05D003408 ORTHO05D003949 9.4e-09 63.2 72 48.6
Gorai.004G218800 Gossypium raimondii HOM05D003408 ORTHO05D003949 9.4e-09 63.2 72 48.6
PGR044G1786 Punica granatum HOM05D003408 ORTHO05D003949 9.4e-09 63.2 70 52.9
RcHm_v2.0_Chr6g0289611 Rosa chinensis HOM05D003408 ORTHO05D003949 9.4e-09 63.2 72 48.6
Atru.chr5.1557 Acer truncatum HOM05D003408 ORTHO05D003949 1.2e-08 62.8 72 48.6
Ciclev10002141m.g Citrus clementina HOM05D003408 ORTHO05D003949 1.2e-08 62.8 77 45.5
FAN05G1372 Fragaria x ananassa HOM05D003408 ORTHO05D003949 1.2e-08 62.8 72 48.6
FAN05G2970 Fragaria x ananassa HOM05D003408 ORTHO05D003949 1.2e-08 62.8 72 48.6
FAN15G1331 Fragaria x ananassa HOM05D003408 ORTHO05D003949 1.2e-08 62.8 72 47.2
FAN20G2222 Fragaria x ananassa HOM05D003408 ORTHO05D003949 1.2e-08 62.8 72 47.2
FAN24G0926 Fragaria x ananassa HOM05D003408 ORTHO05D003949 1.2e-08 62.8 72 47.2
HPP92_018439 Vanilla planifolia HOM05D003408 ORTHO05D003949 1.2e-08 62.8 72 48.6
FvH4_2g22570 Fragaria vesca HOM05D003408 ORTHO05D003949 1.6e-08 62.4 72 47.2
FvH4_6g10820 Fragaria vesca HOM05D003408 ORTHO05D003949 1.6e-08 62.4 72 47.2
Medtr7g102980 Medicago truncatula HOM05D003408 ORTHO05D003949 1.6e-08 62.4 77 46.8
PSO832G3199 Papaver somniferum HOM05D003408 ORTHO05D003949 1.6e-08 62.4 72 48.6
Sc24g0004280 Simmondsia chinensis HOM05D003408 ORTHO05D003949 1.6e-08 62.4 72 47.2
Aqoxy2G03505 Aquilegia oxysepala HOM05D003408 ORTHO05D003949 2.1e-08 62.0 72 45.8
CDE02G0658 Ceratophyllum demersum HOM05D003408 ORTHO05D003949 2.1e-08 62.0 72 48.6
QL12p042634 Quercus lobata HOM05D003408 ORTHO05D003949 2.1e-08 62.0 72 50.0
RcHm_v2.0_Chr3g0462061 Rosa chinensis HOM05D003408 ORTHO05D003949 2.1e-08 62.0 72 47.2
Lj5A435T23 Lonicera japonica HOM05D003408 ORTHO05D003949 2.7e-08 61.6 72 47.2
Manes.05G084000 Manihot esculenta HOM05D003408 ORTHO05D003949 2.7e-08 61.6 71 47.9
Nitab4.5_0001423g0050 Nicotiana tabacum HOM05D003408 ORTHO05D003949 2.7e-08 61.6 77 46.8
Nitab4.5_0009578g0010 Nicotiana tabacum HOM05D003408 ORTHO05D003949 2.7e-08 61.6 77 45.5
VMungo1383G2504 Vigna mungo HOM05D003408 ORTHO05D003949 2.7e-08 61.6 77 46.8
MSTRG.12544 Avicennia marina HOM05D003408 ORTHO05D003949 3.6e-08 61.2 72 47.2
Glyma.19G160800 Glycine max HOM05D003408 ORTHO05D003949 3.6e-08 61.2 77 46.8
Medtr7g096080 Medicago truncatula HOM05D003408 ORTHO05D003949 3.6e-08 61.2 75 48.0
Phvul.001G156200 Phaseolus vulgaris HOM05D003408 ORTHO05D003949 3.6e-08 61.2 77 46.8
Psat0ss3805g0120 Pisum sativum HOM05D003408 ORTHO05D003949 3.6e-08 61.2 77 46.8
TWI18G1059 Tripterygium wilfordii HOM05D003408 ORTHO05D003949 3.6e-08 61.2 72 50.0
AUR62011950 Chenopodium quinoa HOM05D003408 ORTHO05D003949 4.7e-08 60.8 72 47.2
AUR62032264 Chenopodium quinoa HOM05D003408 ORTHO05D003949 4.7e-08 60.8 72 47.2
DCAR_002689 Daucus carota HOM05D003408 ORTHO05D003949 4.7e-08 60.8 72 47.2
Gohir.A08G188200 Gossypium hirsutum HOM05D003408 ORTHO05D003949 4.7e-08 60.8 72 47.2
Lj1g0002030 Lotus japonicus HOM05D003408 ORTHO05D003949 4.7e-08 60.8 77 48.1
ATR0665G243 Amborella trichopoda HOM05D003408 ORTHO05D003949 6.1e-08 60.5 72 45.8
Haze_24525 Corylus avellana HOM05D003408 ORTHO05D003949 6.1e-08 60.5 72 50.0
Glyma.03G158400 Glycine max HOM05D003408 ORTHO05D003949 6.1e-08 60.5 77 46.8
Oeu025787.1 Olea europaea HOM05D003408 ORTHO05D003949 6.1e-08 60.5 72 43.1
PSO210G4171 Papaver somniferum HOM05D003408 ORTHO05D003949 6.1e-08 60.5 72 45.8
PSO461G0030 Papaver somniferum HOM05D003408 ORTHO05D003949 6.1e-08 60.5 72 45.8
Aa31LG5G2240 Aethionema arabicum HOM05D003408 ORTHO05D003949 8.0e-08 60.1 72 47.2
BcaB01g02027 Brassica carinata HOM05D003408 ORTHO05D003949 1.0e-07 59.7 72 45.8
CAN.G1949.2 Capsicum annuum HOM05D003408 ORTHO05D003949 1.0e-07 59.7 72 45.8
ClCG07G000590 Citrullus lanatus HOM05D003408 ORTHO05D003949 1.0e-07 59.7 72 47.2
ECA248G3719 Erigeron canadensis HOM05D003408 ORTHO05D003949 1.0e-07 59.7 72 47.2
PSO210G5132 Papaver somniferum HOM05D003408 ORTHO05D003949 1.0e-07 59.7 72 47.2
RcHm_v2.0_Chr1g0325481 Rosa chinensis HOM05D003408 ORTHO05D003949 1.0e-07 59.7 72 44.4
THA.LOC104804695 Tarenaya hassleriana HOM05D003408 ORTHO05D003949 1.0e-07 59.7 70 50.0
TWI12G0422 Tripterygium wilfordii HOM05D003408 ORTHO05D003949 1.0e-07 59.7 72 47.2
AT4G02610 Arabidopsis thaliana HOM05D003408 ORTHO05D003949 1.4e-07 59.3 72 45.8
unitig_8.g3610 Utricularia gibba HOM05D003408 ORTHO05D003949 1.4e-07 59.3 72 43.1
CDE07G1756 Ceratophyllum demersum HOM05D003408 ORTHO05D003949 1.8e-07 58.9 72 45.8
Thhalv10028877m.g Eutrema salsugineum HOM05D003408 ORTHO05D003949 1.8e-07 58.9 72 44.4
HanXRQChr01g0006881 Helianthus annuus HOM05D003408 ORTHO05D003949 1.8e-07 58.9 72 45.8
Peaxi162Scf00434g00616 Petunia axillaris HOM05D003408 ORTHO05D003949 1.8e-07 58.9 77 42.9
Sp5g07810 Schrenkiella parvula HOM05D003408 ORTHO05D003949 1.8e-07 58.9 72 48.6
Solyc01g098550.3 Solanum lycopersicum HOM05D003408 ORTHO05D003949 1.8e-07 58.9 77 44.2
Sopen01g042100 Solanum pennellii HOM05D003408 ORTHO05D003949 1.8e-07 58.9 77 44.2
TPR.G19110 Trifolium pratense HOM05D003408 ORTHO05D003949 1.8e-07 58.9 77 46.8
ATR0665G493 Amborella trichopoda HOM05D003408 ORTHO05D003949 2.3e-07 58.5 72 43.1
AL6G50440 Arabidopsis lyrata HOM05D003408 ORTHO05D003949 2.3e-07 58.5 72 44.4
BolC9t53143H Brassica oleracea HOM05D003408 ORTHO05D003949 2.3e-07 58.5 72 44.4
BraA09t35853Z Brassica rapa HOM05D003408 ORTHO05D003949 2.3e-07 58.5 72 44.4
MELO3C014311.2 Cucumis melo HOM05D003408 ORTHO05D003949 2.3e-07 58.5 72 45.8
CsaV3_2G013730 Cucumis sativus L. HOM05D003408 ORTHO05D003949 2.3e-07 58.5 72 45.8
Migut.D00368 Erythranthe guttata HOM05D003408 ORTHO05D003949 2.3e-07 58.5 72 45.8
PGSC0003DMG400028566 Solanum tuberosum HOM05D003408 ORTHO05D003949 2.3e-07 58.5 72 44.4
Os07g0182100 Oryza sativa ssp. japonica HOM05D003408 ORTHO05D003949 3.0e-07 58.2 77 42.9
Sed0007538 Sechium edule HOM05D003408 ORTHO05D003949 3.0e-07 58.2 72 44.4
EL10Ac5g10468 Beta vulgaris HOM05D003408 ORTHO05D003949 4.0e-07 57.8 72 45.8
A09p02040 Brassica napus HOM05D003408 ORTHO05D003949 4.0e-07 57.8 72 43.1
Thhalv10010558m.g Eutrema salsugineum HOM05D003408 ORTHO05D003949 4.0e-07 57.8 72 47.2
RcHm_v2.0_Chr3g0462091 Rosa chinensis HOM05D003408 ORTHO05D003949 4.0e-07 57.8 72 47.2
SGA_v2.0_scaffold80G25917 Striga asiatica HOM05D003408 ORTHO05D003949 4.0e-07 57.8 70 45.7
Cfa002320 Carpinus fangiana HOM05D003408 ORTHO05D003949 5.2e-07 57.4 72 48.6
CDE06G0167 Ceratophyllum demersum HOM05D003408 ORTHO05D003949 6.7e-07 57.0 72 45.8
MELO3C026887.2 Cucumis melo HOM05D003408 ORTHO05D003949 6.7e-07 57.0 72 45.8
Lsat_1_v5_gn_5_186800 Lactuca sativa HOM05D003408 ORTHO05D003949 6.7e-07 57.0 72 45.8
Oeu011525.1 Olea europaea HOM05D003408 ORTHO05D003949 6.7e-07 57.0 72 43.1
RcHm_v2.0_Chr1g0317261 Rosa chinensis HOM05D003408 ORTHO05D003949 6.7e-07 57.0 69 49.3
RcHm_v2.0_Chr5g0067051 Rosa chinensis HOM05D003408 ORTHO05D003949 6.7e-07 57.0 72 44.4
Sed0026472 Sechium edule HOM05D003408 ORTHO05D003949 6.7e-07 57.0 72 45.8
BcaC04g24001 Brassica carinata HOM05D003408 ORTHO05D003949 8.8e-07 56.6 72 43.1
Os03g0797500 Oryza sativa ssp. japonica HOM05D003408 ORTHO05D003949 8.8e-07 56.6 72 41.7
Sp6g02520 Schrenkiella parvula HOM05D003408 ORTHO05D003949 8.8e-07 56.6 72 44.4
THA.LOC104825984 Tarenaya hassleriana HOM05D003408 ORTHO05D003949 8.8e-07 56.6 72 44.4
BcaB01g00172 Brassica carinata HOM05D003408 ORTHO05D003949 1.2e-06 56.2 72 45.8
BcaC07g39800 Brassica carinata HOM05D003408 ORTHO05D003949 1.2e-06 56.2 72 45.8
A09p47590 Brassica napus HOM05D003408 ORTHO05D003949 1.2e-06 56.2 72 45.8
C08p29790 Brassica napus HOM05D003408 ORTHO05D003949 1.2e-06 56.2 72 45.8
BolC8t50590H Brassica oleracea HOM05D003408 ORTHO05D003949 1.2e-06 56.2 72 45.8
BraA09t40215Z Brassica rapa HOM05D003408 ORTHO05D003949 1.2e-06 56.2 72 45.8
Carub.0006s3453 Capsella rubella HOM05D003408 ORTHO05D003949 1.2e-06 56.2 72 43.1
ClCG10G013360 Citrullus lanatus HOM05D003408 ORTHO05D003949 1.2e-06 56.2 72 45.8
CsaV3_3G043270 Cucumis sativus L. HOM05D003408 ORTHO05D003949 1.2e-06 56.2 72 45.8
Aqoxy2G03508 Aquilegia oxysepala HOM05D003408 ORTHO05D003949 1.5e-06 55.8 72 43.1
Cc11_g09840 Coffea canephora HOM05D003408 ORTHO05D003949 1.5e-06 55.8 72 41.7
Ah.02g111410 Amaranthus hybridus HOM05D003408 ORTHO05D003949 2.0e-06 55.5 72 45.8
CARHR250900 Cardamine hirsuta HOM05D003408 ORTHO05D003949 2.0e-06 55.5 72 43.1
SalBow4G1970 Salvia bowleyana HOM05D003408 ORTHO05D003949 2.0e-06 55.5 72 43.1
FAN14G0361 Fragaria x ananassa HOM05D003408 ORTHO05D003949 2.6e-06 55.1 72 43.1
Zm00001eb301540 Zea mays HOM05D003408 ORTHO05D003949 2.6e-06 55.1 77 42.9
Prupe.3G144400 Prunus persica HOM05D003408 ORTHO05D003949 3.3e-06 54.7 32 81.2
SHI23993 Sapria himalayana HOM05D003408 ORTHO05D003949 3.3e-06 54.7 71 42.3
Os03g0797000 Oryza sativa ssp. japonica HOM05D003408 ORTHO05D003949 5.7e-06 53.9 77 41.6
Zm00001eb060840 Zea mays HOM05D003408 ORTHO05D003949 5.7e-06 53.9 74 39.2
Zm00001eb060890 Zea mays HOM05D003408 ORTHO05D003949 5.7e-06 53.9 74 39.2
Os03g0797400 Oryza sativa ssp. japonica HOM05D003408 ORTHO05D003949 7.5e-06 53.5 72 41.7


User provided reference genes

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