Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD06G1069400 Malus domestica HOM05D000228 ORTHO05D006129 5.2e-145 517.7 259 100.0
MD04G1068800 Malus domestica HOM05D000228 ORTHO05D006129 3.6e-122 441.8 280 81.1
Prupe.5G089300 Prunus persica HOM05D000228 ORTHO05D006129 1.5e-104 383.3 280 71.8
CiPaw.12G099200 Carya illinoinensis HOM05D000228 ORTHO05D006129 2.9e-87 325.9 280 61.4
Haze_08958 Corylus avellana HOM05D000228 ORTHO05D006129 1.0e-84 317.4 280 60.7
Thecc.03G270300 Theobroma cacao HOM05D000228 ORTHO05D006129 1.7e-84 316.6 281 59.4
Gorai.004G207300 Gossypium raimondii HOM05D000228 ORTHO05D006129 1.4e-81 307.0 281 58.7
Gohir.D08G196600 Gossypium hirsutum HOM05D000228 ORTHO05D006129 9.0e-81 304.3 281 58.4
Gohir.A08G178200 Gossypium hirsutum HOM05D000228 ORTHO05D006129 1.2e-80 303.9 281 58.0
RcHm_v2.0_Chr7g0199481 Rosa chinensis HOM05D000228 ORTHO05D006129 7.6e-80 301.2 281 56.9
QL12p017019 Quercus lobata HOM05D000228 ORTHO05D006129 9.9e-80 300.8 280 58.9
COL.COLO4_05280 Corchorus olitorius HOM05D000228 ORTHO05D006129 3.8e-79 298.9 281 57.3
QL05p069269 Quercus lobata HOM05D000228 ORTHO05D006129 4.9e-79 298.5 280 58.2
FAN08G3600 Fragaria x ananassa HOM05D000228 ORTHO05D006129 1.1e-78 297.4 282 56.7
FvH4_5g01400 Fragaria vesca HOM05D000228 ORTHO05D006129 1.6e-77 293.5 282 56.4
FAN18G2520 Fragaria x ananassa HOM05D000228 ORTHO05D006129 3.5e-77 292.4 282 56.0
FAN04G1469 Fragaria x ananassa HOM05D000228 ORTHO05D006129 4.6e-77 292.0 282 56.0
TWI60G0610 Tripterygium wilfordii HOM05D000228 ORTHO05D006129 4.6e-77 292.0 280 56.1
FAN13G2476 Fragaria x ananassa HOM05D000228 ORTHO05D006129 1.0e-76 290.8 282 55.3
Manes.02G028200 Manihot esculenta HOM05D000228 ORTHO05D006129 1.9e-75 286.6 280 55.7
Dinv37697 Davidia involucrata HOM05D000228 ORTHO05D006129 3.3e-75 285.8 278 55.8
Glyma.11G026700 Glycine max HOM05D000228 ORTHO05D006129 1.6e-74 283.5 281 54.1
arahy.Tifrunner.gnm1.ann1.WX3P41 Arachis hypogaea HOM05D000228 ORTHO05D006129 2.4e-73 279.6 281 56.2
Dinv39017 Davidia involucrata HOM05D000228 ORTHO05D006129 2.4e-73 279.6 290 53.4
arahy.Tifrunner.gnm1.ann1.RU3ERW Arachis hypogaea HOM05D000228 ORTHO05D006129 3.1e-73 279.3 281 56.2
Gorai.007G022200 Gossypium raimondii HOM05D000228 ORTHO05D006129 3.1e-73 279.3 281 53.4
Gohir.D11G020900 Gossypium hirsutum HOM05D000228 ORTHO05D006129 5.3e-73 278.5 281 53.4
Atru.chr9.1533 Acer truncatum HOM05D000228 ORTHO05D006129 1.5e-72 276.9 279 53.8
Glyma.01G215700 Glycine max HOM05D000228 ORTHO05D006129 1.5e-72 276.9 281 53.0
TWI15G0190 Tripterygium wilfordii HOM05D000228 ORTHO05D006129 2.0e-72 276.6 280 53.9
Potri.001G111300 Populus trichocarpa HOM05D000228 ORTHO05D006129 9.9e-72 274.2 295 51.2
Sed0014462 Sechium edule HOM05D000228 ORTHO05D006129 9.9e-72 274.2 280 51.8
MELO3C014034.2 Cucumis melo HOM05D000228 ORTHO05D006129 1.3e-71 273.9 280 51.8
CsaV3_3G003630 Cucumis sativus L. HOM05D000228 ORTHO05D006129 2.2e-71 273.1 280 52.1
ClCG00G000380 Citrullus lanatus HOM05D000228 ORTHO05D006129 3.8e-71 272.3 280 52.1
ClCG00G004750 Citrullus lanatus HOM05D000228 ORTHO05D006129 3.8e-71 272.3 280 52.1
ClCG10G003630 Citrullus lanatus HOM05D000228 ORTHO05D006129 3.8e-71 272.3 280 52.1
Lalb_Chr09g0324731 Lupinus albus HOM05D000228 ORTHO05D006129 1.1e-70 270.8 281 54.1
Ca_06663_v3 Cicer arietinum L. HOM05D000228 ORTHO05D006129 1.4e-70 270.4 281 54.1
Medtr5g011000 Medicago truncatula HOM05D000228 ORTHO05D006129 1.4e-70 270.4 281 54.1
Sabra01G0084800 Salix brachista HOM05D000228 ORTHO05D006129 1.4e-70 270.4 295 52.2
Lalb_Chr05g0214761 Lupinus albus HOM05D000228 ORTHO05D006129 3.2e-70 269.2 281 53.0
Phvul.002G153700 Phaseolus vulgaris HOM05D000228 ORTHO05D006129 1.2e-69 267.3 281 52.3
Lj2g0010994 Lotus japonicus HOM05D000228 ORTHO05D006129 4.6e-69 265.4 281 51.2
VMungo1215G3193 Vigna mungo HOM05D000228 ORTHO05D006129 6.0e-69 265.0 280 51.1
TPR.G6660 Trifolium pratense HOM05D000228 ORTHO05D006129 1.3e-68 263.8 281 52.7
Hma1.2p1_0138F.1_g062630 Hydrangea macrophylla HOM05D000228 ORTHO05D006129 2.3e-68 263.1 278 52.9
Lj2C197T6 Lonicera japonica HOM05D000228 ORTHO05D006129 3.9e-68 262.3 285 53.0
Psat2g181400 Pisum sativum HOM05D000228 ORTHO05D006129 5.1e-68 261.9 281 52.0
Cpa.g.sc29.14 Carica papaya HOM05D000228 ORTHO05D006129 1.1e-67 260.8 245 57.1
Lj8C239G8 Lonicera japonica HOM05D000228 ORTHO05D006129 1.5e-67 260.4 282 52.8
Ciclev10018489m.g Citrus clementina HOM05D000228 ORTHO05D006129 1.9e-67 260.0 271 52.8
vmacro14006 Vaccinium macrocarpon HOM05D000228 ORTHO05D006129 5.6e-67 258.5 281 52.3
TPR.G33163 Trifolium pratense HOM05D000228 ORTHO05D006129 9.6e-67 257.7 281 51.6
Peaxi162Scf00620g00924 Petunia axillaris HOM05D000228 ORTHO05D006129 2.8e-66 256.1 281 49.1
Solyc08g080220.3 Solanum lycopersicum HOM05D000228 ORTHO05D006129 8.2e-66 254.6 281 50.2
Sopen08g028570 Solanum pennellii HOM05D000228 ORTHO05D006129 8.2e-66 254.6 281 50.2
Nitab4.5_0007891g0030 Nicotiana tabacum HOM05D000228 ORTHO05D006129 1.1e-65 254.2 281 49.8
CANSAT21G2272 Cannabis sativa HOM05D000228 ORTHO05D006129 1.8e-65 253.4 281 52.7
Rhsim07G0095300 Rhododendron simsii HOM05D000228 ORTHO05D006129 4.0e-65 252.3 278 51.4
Nitab4.5_0001714g0190 Nicotiana tabacum HOM05D000228 ORTHO05D006129 1.5e-64 250.4 281 49.1
CAN.G981.44 Capsicum annuum HOM05D000228 ORTHO05D006129 5.8e-64 248.4 281 50.2
CSS0022136 Camellia sinensis var. sinensis HOM05D000228 ORTHO05D006129 7.6e-64 248.1 282 50.0
MSTRG.25571 Avicennia marina HOM05D000228 ORTHO05D006129 3.8e-63 245.7 273 49.5
CAN.G981.46 Capsicum annuum HOM05D000228 ORTHO05D006129 2.5e-62 243.0 280 48.9
Hund11530 Selenicereus undatus HOM05D000228 ORTHO05D006129 9.3e-62 241.1 282 48.9
EL10Ac5g12720 Beta vulgaris HOM05D000228 ORTHO05D006129 1.6e-61 240.4 278 48.9
Oeu062351.1 Olea europaea HOM05D000228 ORTHO05D006129 2.1e-61 240.0 278 47.8
PGR031G2544 Punica granatum HOM05D000228 ORTHO05D006129 2.1e-61 240.0 286 47.6
Eucgr.D01929 Eucalyptus grandis HOM05D000228 ORTHO05D006129 2.7e-61 239.6 275 48.4
AUR62010662 Chenopodium quinoa HOM05D000228 ORTHO05D006129 1.8e-60 236.9 278 49.6
AT1G63020 Arabidopsis thaliana HOM05D000228 ORTHO05D006129 3.9e-60 235.7 282 48.9
AUR62017301 Chenopodium quinoa HOM05D000228 ORTHO05D006129 6.7e-60 235.0 281 48.0
Cc08_g13910 Coffea canephora HOM05D000228 ORTHO05D006129 1.5e-59 233.8 282 47.9
AL2G12580 Arabidopsis lyrata HOM05D000228 ORTHO05D006129 4.3e-59 232.3 283 48.4
THA.LOC104809424 Tarenaya hassleriana HOM05D000228 ORTHO05D006129 8.2e-58 228.0 286 47.2
Aa31LG2G520 Aethionema arabicum HOM05D000228 ORTHO05D006129 1.1e-57 227.6 284 48.2
Carub.0002s0198 Capsella rubella HOM05D000228 ORTHO05D006129 1.1e-57 227.6 285 48.4
Sc01g0008810 Simmondsia chinensis HOM05D001804 ORTHO05D006129 2.4e-57 226.5 283 46.3
CARHR048620 Cardamine hirsuta HOM05D000228 ORTHO05D006129 4.1e-57 225.7 281 47.3
Thhalv10023214m.g Eutrema salsugineum HOM05D000228 ORTHO05D006129 9.0e-57 224.6 287 47.0
Ah.12g057750 Amaranthus hybridus HOM05D000228 ORTHO05D006129 1.5e-56 223.8 281 47.3
Sp2g01560 Schrenkiella parvula HOM05D000228 ORTHO05D006129 2.0e-56 223.4 283 46.6
BcaC06g31930 Brassica carinata HOM05D000228 ORTHO05D006129 1.0e-55 221.1 283 45.6
DCAR_006765 Daucus carota HOM05D000228 ORTHO05D006129 1.3e-55 220.7 284 46.1
SHI01912 Sapria himalayana HOM05D000228 ORTHO05D006129 1.3e-55 220.7 277 45.5
C09p15860 Brassica napus HOM05D000228 ORTHO05D006129 2.9e-55 219.5 288 45.5
BraA09t36984Z Brassica rapa HOM05D000228 ORTHO05D006129 6.5e-55 218.4 282 46.1
unitig_22.g5477 Utricularia gibba HOM05D000228 ORTHO05D006129 6.5e-55 218.4 281 45.9
MBI12_g02094_MAGBIO Magnolia biondii HOM05D000228 ORTHO05D006129 1.4e-54 217.2 276 42.8
BcaC04g22731 Brassica carinata HOM05D000228 ORTHO05D006129 1.9e-54 216.9 281 45.9
A03p68370 Brassica napus HOM05D000228 ORTHO05D006129 2.5e-54 216.5 281 46.3
A09p13380 Brassica napus HOM05D000228 ORTHO05D006129 2.5e-54 216.5 282 45.4
BolC4t24462H Brassica oleracea HOM05D000228 ORTHO05D006129 2.5e-54 216.5 281 46.6
BraA01t02634Z Brassica rapa HOM05D000228 ORTHO05D006129 2.5e-54 216.5 281 46.3
Nn6g34281 Nelumbo nucifera HOM05D000228 ORTHO05D006129 4.2e-54 215.7 280 46.1
BcaC02g10404 Brassica carinata HOM05D000228 ORTHO05D006129 9.4e-54 214.5 281 46.3
C04p29320 Brassica napus HOM05D000228 ORTHO05D006129 9.4e-54 214.5 281 46.3
BolC9t54499H Brassica oleracea HOM05D000228 ORTHO05D006129 9.4e-54 214.5 281 45.6
Migut.A00916 Erythranthe guttata HOM05D000228 ORTHO05D006129 6.1e-53 211.8 279 45.5
SGA_v2.0_scaffold146G36222 Striga asiatica HOM05D000228 ORTHO05D006129 5.7e-51 205.3 282 43.3
Lalb_Chr05g0225111 Lupinus albus HOM05D000228 ORTHO05D006129 3.1e-49 199.5 280 42.5
Cfa012094 Carpinus fangiana HOM05D000228 ORTHO05D006129 6.9e-49 198.4 200 56.0
PSO782G2782 Papaver somniferum HOM05D000228 ORTHO05D006129 6.1e-45 185.3 273 38.8
PSO478G3868 Papaver somniferum HOM05D000228 ORTHO05D006129 1.8e-44 183.7 266 39.5
TAR636G2974 Trochodendron aralioides HOM05D000228 ORTHO05D006129 5.1e-44 182.2 164 56.1
Actinidia05231 Actinidia chinensis HOM05D000228 ORTHO05D006129 1.5e-43 180.6 175 56.6
GSVIVG01019869001 Vitis vinifera HOM05D000228 ORTHO05D006129 4.4e-43 179.1 197 52.8
Lsat_1_v5_gn_3_5900 Lactuca sativa HOM05D000228 ORTHO05D006129 1.7e-42 177.2 271 40.2
HanXRQChr06g0165071 Helianthus annuus HOM05D000228 ORTHO05D006129 3.7e-42 176.0 270 40.4
ECA246G3981 Erigeron canadensis HOM05D000228 ORTHO05D006129 5.3e-41 172.2 286 38.1
CDE11G1137 Ceratophyllum demersum HOM05D000228 ORTHO05D006129 2.0e-40 170.2 273 39.2
DCAR_008426 Daucus carota HOM05D000228 ORTHO05D006129 5.9e-40 168.7 168 51.2
Aqoxy1G00844 Aquilegia oxysepala HOM05D000228 ORTHO05D006129 1.6e-37 160.6 283 38.2
Os04g0572600 Oryza sativa ssp. japonica HOM05D000228 ORTHO05D006129 1.5e-35 154.1 279 34.4
Os09g0555200 Oryza sativa ssp. japonica HOM05D000228 ORTHO05D006129 7.4e-35 151.8 279 33.3
SEGI_11246 Sequoiadendron giganteum HOM05D000228 ORTHO05D006129 8.3e-26 121.7 286 30.4
ATR0757G037 Amborella trichopoda HOM05D000228 ORTHO05D006129 2.7e-21 106.7 249 32.1
Mapoly0006s0043 Marchantia polymorpha HOM05D000228 ORTHO05D006129 9.1e-17 91.7 296 27.0
SMO137G0241 Selaginella moellendorffii HOM05D000228 ORTHO05D006129 5.9e-16 89.0 281 26.3
Sabra03G0084800 Salix brachista HOM05D000228 ORTHO05D006129 1.5e-11 74.3 255 27.5
Pp3c17_3180 Physcomitrium patens HOM05D000228 ORTHO05D006129 5.7e-11 72.4 309 27.5
AagrBONN_evm.TU.Sc2ySwM_344.2431 Anthoceros agrestis HOM05D000228 ORTHO05D006129 7.5e-11 72.0 296 27.4
Mapoly0104s0044 Marchantia polymorpha HOM05D000228 ORTHO05D006129 9.2e-09 65.1 122 32.8


User provided reference genes

Program Settings