Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD03G1184600 Malus domestica HOM05D001458 ORTHO05D007170 5.7e-28 126.7 58 100.0
MD11G1201200 Malus domestica HOM05D001458 ORTHO05D007170 2.3e-21 104.8 48 93.8
CANSAT11G0117 Cannabis sativa HOM05D001458 ORTHO05D007170 2.0e-20 101.7 53 83.0
FAN16G1179 Fragaria x ananassa HOM05D001458 ORTHO05D007170 2.0e-20 101.7 53 83.0
Nitab4.5_0000461g0220 Nicotiana tabacum HOM05D001458 ORTHO05D007170 7.5e-20 99.8 55 74.5
Prupe.4G241800 Prunus persica HOM05D001458 ORTHO05D007170 1.3e-19 99.0 48 89.6
Nitab4.5_0003894g0060 Nicotiana tabacum HOM05D001458 ORTHO05D007170 1.7e-19 98.6 49 81.6
RcHm_v2.0_Chr5g0053841 Rosa chinensis HOM05D001458 ORTHO05D007170 1.7e-19 98.6 48 85.4
Lalb_Chr04g0247901 Lupinus albus HOM05D001458 ORTHO05D007170 2.9e-19 97.8 48 85.4
Eucgr.F03701 Eucalyptus grandis HOM05D001458 ORTHO05D007170 4.9e-19 97.1 48 85.4
FAN11G2921 Fragaria x ananassa HOM05D001458 ORTHO05D007170 4.9e-19 97.1 49 83.7
FAN25G1628 Fragaria x ananassa HOM05D001458 ORTHO05D007170 6.4e-19 96.7 48 85.4
LjContig00081g0000365 Lotus japonicus HOM05D001458 ORTHO05D007170 1.1e-18 95.9 48 85.4
PGR031G1458 Punica granatum HOM05D001458 ORTHO05D007170 1.1e-18 95.9 48 81.2
TPR.G14176 Trifolium pratense HOM05D001458 ORTHO05D007170 1.1e-18 95.9 48 83.3
Nitab4.5_0006886g0030 Nicotiana tabacum HOM05D001458 ORTHO05D007170 1.4e-18 95.5 52 75.0
CsaV3_7G017270 Cucumis sativus L. HOM05D001458 ORTHO05D007170 2.4e-18 94.7 54 75.9
HanXRQChr05g0161871 Helianthus annuus HOM05D001458 ORTHO05D007170 2.4e-18 94.7 48 83.3
Cpa.g.sc12.160 Carica papaya HOM05D001458 ORTHO05D007170 3.2e-18 94.4 48 81.2
Psat4g050240 Pisum sativum HOM05D001458 ORTHO05D007170 3.2e-18 94.4 48 79.2
arahy.Tifrunner.gnm1.ann1.5UA89R Arachis hypogaea HOM05D001458 ORTHO05D007170 4.1e-18 94.0 48 83.3
arahy.Tifrunner.gnm1.ann1.ARH0VQ Arachis hypogaea HOM05D001458 ORTHO05D007170 4.1e-18 94.0 48 83.3
CAN.G2569.1 Capsicum annuum HOM05D001458 ORTHO05D007170 4.1e-18 94.0 48 77.1
CAN.G337.9 Capsicum annuum HOM05D001458 ORTHO05D007170 4.1e-18 94.0 48 77.1
Ca_06383_v3 Cicer arietinum L. HOM05D001458 ORTHO05D007170 4.1e-18 94.0 48 81.2
Ca_29964_v3 Cicer arietinum L. HOM05D001458 ORTHO05D007170 4.1e-18 94.0 48 81.2
Medtr5g095090 Medicago truncatula HOM05D001458 ORTHO05D007170 4.1e-18 94.0 48 81.2
Peaxi162Scf00612g00138 Petunia axillaris HOM05D001458 ORTHO05D007170 4.1e-18 94.0 46 82.6
Psat2g008560 Pisum sativum HOM05D001458 ORTHO05D007170 4.1e-18 94.0 48 81.2
HanXRQChr05g0161851 Helianthus annuus HOM05D001458 ORTHO05D007170 5.4e-18 93.6 48 81.2
HanXRQChr05g0161861 Helianthus annuus HOM05D001458 ORTHO05D007170 5.4e-18 93.6 48 81.2
TWI39G0056 Tripterygium wilfordii HOM05D001458 ORTHO05D007170 5.4e-18 93.6 46 87.0
Medtr5g095040 Medicago truncatula HOM05D001458 ORTHO05D007170 7.0e-18 93.2 48 81.2
Peaxi162Scf00612g00027 Petunia axillaris HOM05D001458 ORTHO05D007170 7.0e-18 93.2 46 80.4
SalBow8G1206 Salvia bowleyana HOM05D001458 ORTHO05D007170 7.0e-18 93.2 48 83.3
Gohir.A01G090600 Gossypium hirsutum HOM05D001458 ORTHO05D007170 9.2e-18 92.8 48 81.2
Phvul.008G278300 Phaseolus vulgaris HOM05D001458 ORTHO05D007170 9.2e-18 92.8 48 81.2
VMungo0647G0207 Vigna mungo HOM05D001458 ORTHO05D007170 9.2e-18 92.8 48 81.2
Gohir.D01G075900 Gossypium hirsutum HOM05D001458 ORTHO05D007170 1.2e-17 92.4 48 81.2
Gorai.002G099100 Gossypium raimondii HOM05D001458 ORTHO05D007170 1.2e-17 92.4 48 81.2
GSVIVG01014659001 Vitis vinifera HOM05D001458 ORTHO05D007170 1.6e-17 92.0 48 81.2
Duzib170G0318 Durio zibethinus HOM05D001458 ORTHO05D007170 2.0e-17 91.7 48 81.2
Actinidia35397 Actinidia chinensis HOM05D001458 ORTHO05D007170 2.7e-17 91.3 48 77.1
Potri.001G366700 Populus trichocarpa HOM05D001458 ORTHO05D007170 2.7e-17 91.3 48 81.2
Cfa020207 Carpinus fangiana HOM05D001458 ORTHO05D007170 3.5e-17 90.9 48 81.2
COL.COLO4_07102 Corchorus olitorius HOM05D001458 ORTHO05D007170 3.5e-17 90.9 48 79.2
Haze_09810 Corylus avellana HOM05D001458 ORTHO05D007170 3.5e-17 90.9 48 81.2
Lsat_1_v5_gn_4_63960 Lactuca sativa HOM05D001458 ORTHO05D007170 3.5e-17 90.9 51 76.5
Nn1g03205 Nelumbo nucifera HOM05D001458 ORTHO05D007170 3.5e-17 90.9 48 77.1
Aa31LG8G370 Aethionema arabicum HOM05D001458 ORTHO05D007170 4.6e-17 90.5 48 75.0
Cc05_g14850 Coffea canephora HOM05D001458 ORTHO05D007170 4.6e-17 90.5 46 80.4
ECA236G2484 Erigeron canadensis HOM05D003423 ORTHO05D003910 4.6e-17 90.5 48 79.2
ATR0827G179 Amborella trichopoda HOM05D001458 ORTHO05D007170 6.0e-17 90.1 48 77.1
MELO3C024924.2 Cucumis melo HOM05D001458 ORTHO05D007170 6.0e-17 90.1 48 79.2
Glyma.02G299600 Glycine max HOM05D001458 ORTHO05D007170 6.0e-17 90.1 48 81.2
Sed0010799 Sechium edule HOM05D001458 ORTHO05D007170 6.0e-17 90.1 48 79.2
CSS0006064 Camellia sinensis var. sinensis HOM05D001458 ORTHO05D007170 7.8e-17 89.7 48 77.1
CSS0027160 Camellia sinensis var. sinensis HOM05D001458 ORTHO05D007170 7.8e-17 89.7 48 77.1
CiPaw.11G202700 Carya illinoinensis HOM05D001458 ORTHO05D007170 1.0e-16 89.4 48 77.1
ClCG09G021210 Citrullus lanatus HOM05D001458 ORTHO05D007170 1.0e-16 89.4 48 77.1
Lj8A178T76 Lonicera japonica HOM05D001458 ORTHO05D007170 1.0e-16 89.4 48 77.1
QL08p004686 Quercus lobata HOM05D001458 ORTHO05D007170 1.0e-16 89.4 48 79.2
Sopen07g033650 Solanum pennellii HOM05D001458 ORTHO05D007170 1.0e-16 89.4 48 75.0
Thecc.07G015600 Theobroma cacao HOM05D001458 ORTHO05D007170 1.0e-16 89.4 48 79.2
AUR62036436 Chenopodium quinoa HOM05D001458 ORTHO05D007170 1.3e-16 89.0 48 75.0
Dinv40848 Davidia involucrata HOM05D001458 ORTHO05D007170 1.3e-16 89.0 48 77.1
PSO210G1564 Papaver somniferum HOM05D001458 ORTHO05D007170 1.3e-16 89.0 46 80.4
PSO210G4199 Papaver somniferum HOM05D001458 ORTHO05D007170 1.3e-16 89.0 46 80.4
Solyc07g065430.2 Solanum lycopersicum HOM05D001458 ORTHO05D007170 1.3e-16 89.0 46 78.3
vmacro09653 Vaccinium macrocarpon HOM05D001458 ORTHO05D007170 1.3e-16 89.0 48 77.1
CsaV3_7G017280 Cucumis sativus L. HOM05D001458 ORTHO05D007170 1.7e-16 88.6 48 77.1
CsaV3_7G018280 Cucumis sativus L. HOM05D001458 ORTHO05D007170 1.7e-16 88.6 48 77.1
CsaV3_UNG200520 Cucumis sativus L. HOM05D001458 ORTHO05D007170 1.7e-16 88.6 48 77.1
CsaV3_UNG214460 Cucumis sativus L. HOM05D001458 ORTHO05D007170 1.7e-16 88.6 48 77.1
FvH4_3g29420 Fragaria vesca HOM05D001458 ORTHO05D007170 1.7e-16 88.6 58 70.7
Rhsim04G0013200 Rhododendron simsii HOM05D001458 ORTHO05D007170 1.7e-16 88.6 46 80.4
Aqoxy1G04244 Aquilegia oxysepala HOM05D001458 ORTHO05D007170 2.3e-16 88.2 48 75.0
CARHR087750 Cardamine hirsuta HOM05D001458 ORTHO05D007170 2.3e-16 88.2 48 72.9
AUR62017079 Chenopodium quinoa HOM05D001458 ORTHO05D007170 3.0e-16 87.8 48 75.0
Migut.M01660 Erythranthe guttata HOM05D001458 ORTHO05D007170 3.0e-16 87.8 48 72.9
Hma1.2p1_0889F.1_g232825 Hydrangea macrophylla HOM05D001458 ORTHO05D007170 3.0e-16 87.8 48 77.1
Os03g0752200 Oryza sativa ssp. japonica HOM05D001458 ORTHO05D007170 3.0e-16 87.8 48 75.0
AL3G24910 Arabidopsis lyrata HOM05D001458 ORTHO05D007170 3.9e-16 87.4 48 72.9
AT3G13170 Arabidopsis thaliana HOM05D001458 ORTHO05D007170 3.9e-16 87.4 48 72.9
EL10Ac4g07597 Beta vulgaris HOM05D001458 ORTHO05D007170 3.9e-16 87.4 48 75.0
Manes.15G061000 Manihot esculenta HOM05D001458 ORTHO05D007170 3.9e-16 87.4 48 77.1
THA.LOC104810290 Tarenaya hassleriana HOM05D001458 ORTHO05D007170 3.9e-16 87.4 47 74.5
SGA_v2.0_scaffold171G38881 Striga asiatica HOM05D003514 ORTHO05D004280 6.6e-16 86.7 46 78.3
Oeu005966.1 Olea europaea HOM05D001458 ORTHO05D007170 8.6e-16 86.3 48 77.1
Ciclev10010322m.g Citrus clementina HOM05D001458 ORTHO05D007170 1.1e-15 85.9 48 75.0
Sc03g0011170 Simmondsia chinensis HOM05D001458 ORTHO05D007170 1.1e-15 85.9 48 75.0
HPP92_006515 Vanilla planifolia HOM05D001458 ORTHO05D007170 1.5e-15 85.5 50 72.0
Carub.0003s1251 Capsella rubella HOM05D001458 ORTHO05D007170 1.9e-15 85.1 48 70.8
MBI16_g22433_MAGBIO Magnolia biondii HOM05D001458 ORTHO05D007170 1.9e-15 85.1 46 76.1
HPP92_018596 Vanilla planifolia HOM05D001458 ORTHO05D007170 2.5e-15 84.7 48 75.0
Thhalv10022332m.g Eutrema salsugineum HOM05D001458 ORTHO05D007170 3.3e-15 84.3 48 70.8
A01p40380 Brassica napus HOM05D001458 ORTHO05D007170 4.3e-15 84.0 46 73.9
C01p51920 Brassica napus HOM05D001458 ORTHO05D007170 4.3e-15 84.0 46 73.9
BolC1t05139H Brassica oleracea HOM05D001458 ORTHO05D007170 4.3e-15 84.0 46 73.9
BraA01t04073Z Brassica rapa HOM05D001458 ORTHO05D007170 4.3e-15 84.0 46 73.9
HPP92_018592 Vanilla planifolia HOM05D001458 ORTHO05D007170 7.3e-15 83.2 48 72.9
MBI16_g22434_MAGBIO Magnolia biondii HOM05D001458 ORTHO05D000074 1.1e-13 79.3 46 71.7
unitig_747.g21640 Utricularia gibba HOM05D001458 ORTHO05D007170 1.8e-13 78.6 48 70.8
Pp3c6_18230 Physcomitrium patens HOM05D001458 ORTHO05D007170 2.3e-13 78.2 53 64.2
AagrBONN_evm.TU.Sc2ySwM_368.1624 Anthoceros agrestis HOM05D001458 ORTHO05D007170 5.2e-13 77.0 53 64.2
Prupe.5G052600 Prunus persica HOM05D001458 ORTHO05D007170 5.2e-13 77.0 40 82.5
SEGI_24669 Sequoiadendron giganteum HOM05D001458 ORTHO05D007170 2.0e-12 75.1 48 64.6
SMO239G0116 Selaginella moellendorffii HOM05D001458 ORTHO05D007170 9.8e-12 72.8 53 60.4
Lj1g0016902 Lotus japonicus HOM05D001458 ORTHO05D007170 2.2e-11 71.6 36 86.1
SMO307G0021 Selaginella moellendorffii HOM05D001458 ORTHO05D007170 8.3e-11 69.7 47 66.0
SHI26533 Sapria himalayana HOM05D001458 ORTHO05D007170 1.1e-10 69.3 35 82.9
CAN.G337.13 Capsicum annuum HOM05D001458 ORTHO05D007170 2.4e-10 68.2 35 77.1
PRCOL_00005653 Prasinoderma coloniale HOM05D001458 ORTHO05D006787 4.3e-07 57.4 47 55.3
FAN03G0775 Fragaria x ananassa HOM05D001458 ORTHO05D006787 7.3e-07 56.6 53 41.5
RhsimUnG0086200 Rhododendron simsii HOM05D001458 ORTHO05D006787 7.3e-07 56.6 48 50.0
Atru.chr2.3673 Acer truncatum HOM05D001458 ORTHO05D007170 9.5e-07 56.2 36 66.7
Cre02.g084800 Chlamydomonas reinhardtii HOM05D001458 ORTHO05D006787 1.6e-06 55.5 48 52.1
Lj6g0023100 Lotus japonicus HOM05D003976 ORTHO05D004711 1.6e-06 55.5 45 46.7
RcHm_v2.0_Chr2g0089851 Rosa chinensis HOM05D001458 ORTHO05D020639 1.6e-06 55.5 47 48.9
RcHm_v2.0_Chr2g0086091 Rosa chinensis HOM05D001458 ORTHO05D020639 4.7e-06 53.9 47 48.9
CBR_g20285 Chara braunii HOM05D001458 ORTHO05D006787 6.2e-06 53.5 49 49.0
Cfa023723 Carpinus fangiana HOM05D001458 ORTHO05D122480 8.1e-06 53.1 48 54.2


User provided reference genes

Program Settings