Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD03G1021100 Malus domestica HOM05D004763 ORTHO05D007492 0.0e+00 1322.0 675 100.0
Prupe.6G018600 Prunus persica HOM05D004763 ORTHO05D007492 0.0e+00 1199.1 696 88.5
CiPaw.14G125100 Carya illinoinensis HOM05D004763 ORTHO05D007492 0.0e+00 1118.6 678 83.3
RcHm_v2.0_Chr5g0078101 Rosa chinensis HOM05D004763 ORTHO05D007492 0.0e+00 1117.4 661 85.2
FvH4_3g43550 Fragaria vesca HOM05D004763 ORTHO05D007492 0.0e+00 1108.6 664 83.7
Thecc.09G223100 Theobroma cacao HOM05D004763 ORTHO05D007492 0.0e+00 1107.0 674 83.4
GSVIVG01025336001 Vitis vinifera HOM05D004763 ORTHO05D007492 0.0e+00 1105.1 680 82.5
MELO3C014639.2 Cucumis melo HOM05D004763 ORTHO05D007492 0.0e+00 1104.0 677 82.4
Sc09g0000480 Simmondsia chinensis HOM05D004763 ORTHO05D007492 0.0e+00 1104.0 680 81.6
Manes.14G014500 Manihot esculenta HOM05D004763 ORTHO05D007492 0.0e+00 1102.8 669 82.8
TWI34G0672 Tripterygium wilfordii HOM05D004763 ORTHO05D007492 0.0e+00 1102.8 680 82.2
Dinv36304 Davidia involucrata HOM05D004763 ORTHO05D007492 0.0e+00 1100.5 679 81.3
Nn7g36058 Nelumbo nucifera HOM05D004763 ORTHO05D007492 0.0e+00 1100.1 674 82.2
QL01p006243 Quercus lobata HOM05D004763 ORTHO05D007492 0.0e+00 1099.7 681 81.9
CSS0044360 Camellia sinensis var. sinensis HOM05D004763 ORTHO05D007492 0.0e+00 1097.8 674 82.5
CsaV3_4G023800 Cucumis sativus L. HOM05D004763 ORTHO05D007492 0.0e+00 1096.6 677 82.1
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 0.0e+00 1096.3 678 82.0
Gorai.013G250000 Gossypium raimondii HOM05D004763 ORTHO05D007492 0.0e+00 1095.1 672 82.4
Hund22081 Selenicereus undatus HOM05D004763 ORTHO05D007492 0.0e+00 1093.2 680 81.5
FAN16G3272 Fragaria x ananassa HOM05D004763 ORTHO05D007492 0.0e+00 1092.8 674 82.0
TAR623G1126 Trochodendron aralioides HOM05D004763 ORTHO05D007492 0.0e+00 1092.4 675 81.5
Gohir.D13G219100 Gossypium hirsutum HOM05D004763 ORTHO05D007492 0.0e+00 1092.0 672 82.1
Gohir.A13G215400 Gossypium hirsutum HOM05D004763 ORTHO05D007492 0.0e+00 1091.3 672 82.3
Potri.003G211000 Populus trichocarpa HOM05D004763 ORTHO05D007492 0.0e+00 1089.7 677 82.1
Medtr2g098510 Medicago truncatula HOM05D004763 ORTHO05D007492 0.0e+00 1088.6 670 82.2
Glyma.13G342900 Glycine max HOM05D004763 ORTHO05D007492 0.0e+00 1085.5 680 81.5
CANSAT54G1729 Cannabis sativa HOM05D004763 ORTHO05D007492 0.0e+00 1083.2 682 81.4
Psat5g288480 Pisum sativum HOM05D004763 ORTHO05D007492 0.0e+00 1082.8 676 81.2
Sed0013957 Sechium edule HOM05D004763 ORTHO05D007492 0.0e+00 1082.4 677 80.9
arahy.Tifrunner.gnm1.ann1.P0K6XU Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1082.0 673 82.0
Hma1.2p1_1169F.1_g263300 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 0.0e+00 1081.6 678 79.9
Eucgr.B03662 Eucalyptus grandis HOM05D004763 ORTHO05D007492 0.0e+00 1079.3 681 81.1
Aqoxy1G00185 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 0.0e+00 1078.5 678 80.2
arahy.Tifrunner.gnm1.ann1.VYK1P0 Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1078.5 675 81.3
Cc01_g04070 Coffea canephora HOM05D004763 ORTHO05D007492 0.0e+00 1078.2 675 79.4
arahy.Tifrunner.gnm1.ann1.GN3GFY Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1076.6 675 81.2
Phvul.005G150500 Phaseolus vulgaris HOM05D004763 ORTHO05D007492 4.6e-312 1074.3 677 81.4
Lj3g0020649 Lotus japonicus HOM05D004763 ORTHO05D007492 1.8e-311 1072.0 681 80.3
Lalb_Chr14g0372291 Lupinus albus HOM05D004763 ORTHO05D007492 1.8e-311 1072.0 681 80.0
Ciclev10014511m.g Citrus clementina HOM05D004763 ORTHO05D007492 2.3e-311 1071.6 667 81.0
Cpa.g.sc84.111 Carica papaya HOM05D004763 ORTHO05D007492 1.2e-310 1069.3 705 78.0
HanXRQChr14g0451781 Helianthus annuus HOM05D004763 ORTHO05D007492 2.7e-310 1068.1 683 79.2
TPR.G18851 Trifolium pratense HOM05D004763 ORTHO05D007492 6.0e-310 1067.0 661 81.7
AUR62019250 Chenopodium quinoa HOM05D004763 ORTHO05D007492 2.5e-308 1061.6 680 80.0
COL.COLO4_09893 Corchorus olitorius HOM05D004763 ORTHO05D007492 9.5e-308 1059.7 670 80.1
PGR102G0325 Punica granatum HOM05D004763 ORTHO05D007492 2.8e-307 1058.1 672 79.9
arahy.Tifrunner.gnm1.ann1.X75IXN Arachis hypogaea HOM05D004763 ORTHO05D007492 2.3e-306 1055.0 713 76.7
THA.LOC104816912 Tarenaya hassleriana HOM05D004763 ORTHO05D007492 1.2e-305 1052.7 675 78.5
BcaC05g28282 Brassica carinata HOM05D004763 ORTHO05D007492 1.5e-305 1052.4 670 78.1
C05p43300 Brassica napus HOM05D004763 ORTHO05D007492 2.6e-305 1051.6 670 77.9
Migut.D00558 Erythranthe guttata HOM05D004763 ORTHO05D007492 3.4e-305 1051.2 682 78.0
EL10Ac4g10318 Beta vulgaris HOM05D004763 ORTHO05D007492 5.8e-305 1050.4 667 79.5
AL3G34700 Arabidopsis lyrata HOM05D004763 ORTHO05D007492 7.5e-305 1050.0 661 78.7
ECA238G4453 Erigeron canadensis HOM05D004763 ORTHO05D007492 9.8e-305 1049.7 683 78.5
PSO339G3791 Papaver somniferum HOM05D004763 ORTHO05D007492 2.2e-304 1048.5 681 78.7
Sopen01g009200 Solanum pennellii HOM05D004763 ORTHO05D007492 2.2e-304 1048.5 675 77.3
Solyc01g014490.4 Solanum lycopersicum HOM05D004763 ORTHO05D007492 2.9e-304 1048.1 675 77.3
VMungo1080G1755 Vigna mungo HOM05D004763 ORTHO05D007492 3.7e-304 1047.7 650 82.5
AT3G20780 Arabidopsis thaliana HOM05D004763 ORTHO05D007492 1.1e-303 1046.2 661 78.7
Thhalv10020214m.g Eutrema salsugineum HOM05D004763 ORTHO05D007492 2.4e-303 1045.0 661 78.5
Sabra03G0153800 Salix brachista HOM05D004763 ORTHO05D007492 3.2e-303 1044.6 653 81.5
Sabra03G0156000 Salix brachista HOM05D004763 ORTHO05D007492 3.2e-303 1044.6 653 81.5
Peaxi162Scf00773g00119 Petunia axillaris HOM05D004763 ORTHO05D007492 4.1e-303 1044.3 683 77.0
Carub.0003s2074 Capsella rubella HOM05D004763 ORTHO05D007492 5.4e-303 1043.9 661 78.4
Duzib150G1218 Durio zibethinus HOM05D004763 ORTHO05D007492 4.6e-302 1040.8 695 77.6
Sp3g18800 Schrenkiella parvula HOM05D004763 ORTHO05D007492 4.6e-302 1040.8 660 77.7
BcaB06g26148 Brassica carinata HOM05D004763 ORTHO05D007492 1.3e-301 1039.3 665 77.9
A05p28000 Brassica napus HOM05D004763 ORTHO05D007492 2.3e-301 1038.5 684 76.6
ATR0605G091 Amborella trichopoda HOM05D004763 ORTHO05D007492 5.6e-300 1033.9 673 77.3
BraA05t21683Z Brassica rapa HOM05D004763 ORTHO05D007492 6.2e-299 1030.4 692 75.6
BolC5t33062H Brassica oleracea HOM05D004763 ORTHO05D007492 4.4e-297 1024.2 701 74.2
Nitab4.5_0006575g0020 Nicotiana tabacum HOM05D004763 ORTHO05D007492 1.4e-295 1019.2 686 76.2
HPP92_020536 Vanilla planifolia HOM05D004763 ORTHO05D007492 2.3e-293 1011.9 661 75.9
Nitab4.5_0003069g0050 Nicotiana tabacum HOM05D004763 ORTHO05D007492 9.6e-292 1006.5 673 76.8
Os09g0279600 Oryza sativa ssp. japonica HOM05D004763 ORTHO05D007492 1.6e-291 1005.7 647 76.8
CDE04G0998 Ceratophyllum demersum HOM05D004763 ORTHO05D007492 2.0e-289 998.8 642 77.3
SGA_v2.0_scaffold1G00797 Striga asiatica HOM05D004763 ORTHO05D007492 3.4e-289 998.0 731 72.0
Rhsim01G0189300 Rhododendron simsii HOM05D004763 ORTHO05D007492 1.1e-287 993.0 764 70.2
Actinidia39377 Actinidia chinensis HOM05D004763 ORTHO05D007492 1.5e-281 972.6 675 74.2
Lsat_1_v5_gn_2_101121 Lactuca sativa HOM05D004763 ORTHO05D007492 9.3e-279 963.4 699 72.0
Aa31LG8G7590 Aethionema arabicum HOM05D004763 ORTHO05D007492 6.6e-277 957.2 653 74.9
Pp3c22_12720 Physcomitrium patens HOM05D004763 ORTHO05D007492 4.8e-267 924.5 668 69.5
Ah.04g161760 Amaranthus hybridus HOM05D004763 ORTHO05D007492 1.4e-266 922.9 675 72.0
Atru.chr3.2503 Acer truncatum HOM05D004763 ORTHO05D007492 5.3e-266 921.0 588 78.7
Ca_01270_v3 Cicer arietinum L. HOM05D004763 ORTHO05D007492 5.8e-265 917.5 603 78.9
CARHR096610 Cardamine hirsuta HOM05D004763 ORTHO05D007492 1.9e-260 902.5 590 76.1
AagrBONN_evm.TU.Sc2ySwM_344.3405 Anthoceros agrestis HOM05D004763 ORTHO05D007492 1.6e-259 899.4 645 67.8
DCAR_024396 Daucus carota HOM05D004763 ORTHO05D007492 1.6e-259 899.4 677 69.4
FAN21G2003 Fragaria x ananassa HOM05D004763 ORTHO05D007492 5.3e-258 894.4 637 73.8
Mapoly0042s0060 Marchantia polymorpha HOM05D004763 ORTHO05D007492 6.9e-258 894.0 650 69.1
FAN11G2145 Fragaria x ananassa HOM05D004763 ORTHO05D007492 2.0e-257 892.5 701 68.2
SMO116G0144 Selaginella moellendorffii HOM05D004763 ORTHO05D007492 2.9e-256 888.6 655 68.1
Lj4g0010878 Lotus japonicus HOM05D004763 ORTHO05D007492 7.2e-255 884.0 681 70.3
Aqoxy381s001 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 7.9e-254 880.6 658 70.8
FAN11G0713 Fragaria x ananassa HOM05D004763 ORTHO05D007492 3.0e-253 878.6 701 67.3
CBR_g31022 Chara braunii HOM05D004763 ORTHO05D007492 6.7e-253 877.5 662 65.9
Hma1.2p1_1169F.1_g263310 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 2.2e-243 845.9 514 80.9
Potri.T085401 Populus trichocarpa HOM05D004763 ORTHO05D007492 5.5e-231 804.7 443 89.4
Zm00001eb308780 Zea mays HOM05D004763 ORTHO05D007492 9.5e-207 724.2 463 76.2
Cre01.g019750 Chlamydomonas reinhardtii HOM05D004763 ORTHO05D007492 6.4e-195 684.9 684 53.2
ClCG02G023620 Citrullus lanatus HOM05D004763 ORTHO05D007492 4.1e-178 629.0 374 85.0
SEGI_32015 Sequoiadendron giganteum HOM05D004763 ORTHO05D007492 2.7e-177 626.3 382 78.3
Lsat_1_v5_gn_1_127001 Lactuca sativa HOM05D004763 ORTHO05D007492 1.1e-175 620.9 549 60.3
MBI01_g15753_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D007492 2.4e-173 613.2 378 81.2
PRCOL_00005940 Prasinoderma coloniale HOM05D004763 ORTHO05D007492 1.9e-170 603.6 675 50.1
MCO09G243 Micromonas commoda HOM05D004763 ORTHO05D007492 3.2e-170 602.8 668 50.1
CAN.G646.1 Capsicum annuum HOM05D004763 ORTHO05D007492 3.9e-168 595.9 366 80.6
PGSC0003DMG401029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 8.1e-166 588.2 387 76.7
Lj1A366T12 Lonicera japonica HOM05D004763 ORTHO05D007492 9.0e-141 505.0 367 71.4
Lsat_1_v5_gn_1_127121 Lactuca sativa HOM05D004763 ORTHO05D007492 3.3e-135 486.5 617 48.1
Lju1319A4T15 Lonicera japonica HOM05D004763 ORTHO05D007492 5.3e-133 479.2 312 78.2
CAN.G442.1 Capsicum annuum HOM05D004763 ORTHO05D007492 8.8e-128 461.8 309 74.4
PGSC0003DMG402029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 2.6e-127 460.3 307 73.9
Lj1C366G5 Lonicera japonica HOM05D004763 ORTHO05D007492 8.5e-107 392.1 304 70.4
Lsat_1_v5_gn_1_126981 Lactuca sativa HOM05D004763 ORTHO05D007492 2.5e-106 390.6 467 49.5
SEGI_39045 Sequoiadendron giganteum HOM05D004763 ORTHO05D007492 2.6e-71 274.2 218 63.8
Actinidia06319 Actinidia chinensis HOM05D004763 ORTHO05D007492 3.4e-71 273.9 216 66.2
Lju1319C4G3 Lonicera japonica HOM05D004763 ORTHO05D014896 4.7e-57 226.9 234 56.8
Eucgr.B03660 Eucalyptus grandis HOM05D004763 ORTHO05D007492 2.6e-55 221.1 182 68.7
TPR.G29742 Trifolium pratense HOM05D004763 ORTHO05D007492 1.3e-54 218.8 246 52.0
Oeu036968.1 Olea europaea HOM05D004763 ORTHO05D007492 1.3e-51 208.8 104 90.4
Lsat_1_v5_gn_1_126941 Lactuca sativa HOM05D004763 ORTHO05D007492 1.4e-48 198.7 194 52.1
TPR.G29743 Trifolium pratense HOM05D004763 ORTHO05D007492 9.9e-47 192.6 215 54.0
Lsat_1_v5_gn_1_127161 Lactuca sativa HOM05D004763 ORTHO05D007492 2.7e-36 157.9 149 57.7
Aa31LG8G7550 Aethionema arabicum HOM05D004763 ORTHO05D007492 6.0e-36 156.8 468 34.2
Lsat_1_v5_gn_1_127201 Lactuca sativa HOM05D004763 ORTHO05D007492 7.9e-36 156.4 415 31.6
Ca_01269_v3 Cicer arietinum L. HOM05D000073 ORTHO05D000033 5.3e-32 143.7 107 72.0
MBI09_g40619_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D019264 4.5e-31 140.6 87 78.2
MBI04_g09599_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D019264 5.8e-31 140.2 87 78.2
MBI02_g24793_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D019264 4.9e-30 137.1 87 77.0
Thecc.03G073800 Theobroma cacao HOM05D004763 ORTHO05D019264 4.9e-30 137.1 98 68.4
PGSC0003DMG400012096 Solanum tuberosum HOM05D004763 ORTHO05D014896 7.1e-29 133.3 86 77.9
PGSC0003DMG401017076 Solanum tuberosum HOM05D004763 ORTHO05D026177 3.8e-22 110.9 113 51.3
arahy.Tifrunner.gnm1.ann1.50I1V9 Arachis hypogaea HOM05D004763 ORTHO05D014896 1.4e-19 102.4 68 79.4
arahy.Tifrunner.gnm1.ann1.F7UR4V Arachis hypogaea HOM05D004763 ORTHO05D014896 3.0e-19 101.3 68 77.9
arahy.Tifrunner.gnm1.ann1.G1IAFF Arachis hypogaea HOM05D004763 ORTHO05D014896 6.7e-19 100.1 82 67.1
Lsat_1_v5_gn_3_118680 Lactuca sativa HOM05D004763 ORTHO05D007492 2.5e-18 98.2 55 85.5
Lju1319A4T14 Lonicera japonica HOM05D004763 ORTHO05D019264 8.2e-17 93.2 54 83.3
PGSC0003DMG400026817 Solanum tuberosum HOM05D004763 ORTHO05D026177 2.4e-16 91.7 82 63.4
Sopen04g015550 Solanum pennellii HOM05D000004 ORTHO05D000002 4.5e-15 87.4 96 54.2
arahy.Tifrunner.gnm1.ann1.65KXHR Arachis hypogaea HOM05D004763 ORTHO05D014896 1.3e-14 85.9 49 87.8
TWI60G1170 Tripterygium wilfordii HOM05D004763 ORTHO05D014896 3.8e-14 84.3 49 85.7
Lsat_1_v5_gn_1_125620 Lactuca sativa HOM05D004763 ORTHO05D007492 1.9e-13 82.0 201 32.8
arahy.Tifrunner.gnm1.ann1.YT3XVJ Arachis hypogaea HOM05D012186 ORTHO05D009594 3.2e-13 81.3 87 55.2
Lsat_1_v5_gn_1_126960 Lactuca sativa HOM05D004763 ORTHO05D012314 1.6e-12 79.0 92 46.7
Solyc11g028310.3 Solanum lycopersicum HOM05D004763 ORTHO05D026177 3.6e-12 77.8 63 68.3
PGSC0003DMG400019106 Solanum tuberosum HOM05D004763 ORTHO05D007492 7.4e-10 70.1 37 86.5
Aa31LG8G7540 Aethionema arabicum HOM05D004763 ORTHO05D007492 4.8e-09 67.4 47 72.3
Solyc12g036030.1 Solanum lycopersicum HOM05D004763 ORTHO05D026177 1.8e-08 65.5 105 41.0
TPR.G18832 Trifolium pratense HOM05D006024 ORTHO05D007505 4.5e-07 60.8 45 66.7
RcHm_v2.0_Chr3g0472751 Rosa chinensis HOM05D004763 ORTHO05D344474 1.0e-06 59.7 37 86.5
Solyc11g028340.3 Solanum lycopersicum HOM05D004763 ORTHO05D019264 5.0e-06 57.4 43 58.1


User provided reference genes

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