Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD01G1017400 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 2087.8 1032 100.0
MD15G1333600 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 1958.3 1032 93.1
Prupe.6G174100 Prunus persica HOM05D004874 ORTHO05D006796 0.0e+00 1883.2 1030 90.0
RcHm_v2.0_Chr2g0116231 Rosa chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1759.6 1030 84.3
FvH4_1g22150 Fragaria vesca HOM05D004874 ORTHO05D006796 0.0e+00 1750.3 1031 83.3
FAN28G2703 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1738.4 1031 83.0
FAN23G3027 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1736.1 1031 83.1
FAN26G2351 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1731.5 1031 83.0
FAN19G0866 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1713.4 1057 80.5
CANSAT01G0647 Cannabis sativa HOM05D004874 ORTHO05D006796 0.0e+00 1658.7 1033 79.2
Thecc.01G111200 Theobroma cacao HOM05D004874 ORTHO05D006796 0.0e+00 1628.2 1034 77.3
Gorai.011G111800 Gossypium raimondii HOM05D004874 ORTHO05D006796 0.0e+00 1619.0 1034 76.5
Ciclev10024728m.g Citrus clementina HOM05D004874 ORTHO05D006796 0.0e+00 1617.8 1033 77.1
Gohir.A10G086600 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1614.7 1034 76.5
Atru.chr4.387 Acer truncatum HOM05D004874 ORTHO05D006796 0.0e+00 1612.8 1034 76.4
Gohir.D10G102100 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1609.0 1034 76.3
QL06p032401 Quercus lobata HOM05D004874 ORTHO05D006796 0.0e+00 1602.0 1033 76.3
Glyma.04G220000 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 1585.5 1025 75.5
Phvul.009G140100 Phaseolus vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 1582.4 1025 75.4
Dinv19497 Davidia involucrata HOM05D004874 ORTHO05D006796 0.0e+00 1577.8 1038 76.1
Glyma.06G145900 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 1568.9 1025 75.1
VMungo1309G2704 Vigna mungo HOM05D004874 ORTHO05D006796 0.0e+00 1567.4 1025 74.4
TWI74G1507 Tripterygium wilfordii HOM05D004874 ORTHO05D006796 0.0e+00 1564.3 1034 75.1
Lj1g0000337 Lotus japonicus HOM05D004874 ORTHO05D006796 0.0e+00 1561.2 1034 73.7
Potri.005G083800 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1556.6 1034 75.0
Manes.13G077640 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1553.5 1033 75.1
Psat5g065960 Pisum sativum HOM05D004874 ORTHO05D006796 0.0e+00 1553.5 1034 73.0
TPR.G23744 Trifolium pratense HOM05D004874 ORTHO05D006796 0.0e+00 1550.4 1035 72.5
Ca_16889_v3 Cicer arietinum L. HOM05D004874 ORTHO05D006796 0.0e+00 1549.6 1034 73.2
Medtr3g094770 Medicago truncatula HOM05D004874 ORTHO05D006796 0.0e+00 1547.7 1038 72.9
Actinidia15577 Actinidia chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1546.6 1029 74.1
CSS0018271 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 1540.0 1036 73.9
Potri.007G081900 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1538.9 1034 74.0
GSVIVG01022217001 Vitis vinifera HOM05D004874 ORTHO05D006796 0.0e+00 1535.4 1037 73.8
Sabra05G0068900 Salix brachista HOM05D004874 ORTHO05D006796 0.0e+00 1531.5 1039 73.4
Haze_25029 Corylus avellana HOM05D004874 ORTHO05D006796 0.0e+00 1521.1 989 77.5
Rhsim10G0151300 Rhododendron simsii HOM05D004874 ORTHO05D006796 0.0e+00 1511.5 1030 72.8
CSS0002284 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 1505.3 1046 72.3
arahy.Tifrunner.gnm1.ann1.ZQBN5H Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 1501.9 1034 71.3
Lalb_Chr11g0068041 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 1498.0 1034 71.2
arahy.Tifrunner.gnm1.ann1.M2IALY Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 1497.6 1034 71.3
Nn5g28922 Nelumbo nucifera HOM05D004874 ORTHO05D006796 0.0e+00 1488.4 1037 71.6
ClCG01G016180 Citrullus lanatus HOM05D004874 ORTHO05D006796 0.0e+00 1480.3 1030 71.1
CsaV3_6G042450 Cucumis sativus L. HOM05D004874 ORTHO05D006796 0.0e+00 1473.0 1030 70.4
PSO675G8458 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 1460.7 1029 70.4
Manes.12G141800 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1459.9 1031 70.9
Eucgr.H04838 Eucalyptus grandis HOM05D004874 ORTHO05D006796 0.0e+00 1454.9 1033 69.7
PSO541G0735 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 1452.6 1030 70.0
Aqoxy6G00493 Aquilegia oxysepala HOM05D004874 ORTHO05D006796 0.0e+00 1441.8 1042 69.6
Cc07_g16070 Coffea canephora HOM05D004874 ORTHO05D006796 0.0e+00 1427.5 1031 68.8
TAR628G0415 Trochodendron aralioides HOM05D004874 ORTHO05D006796 0.0e+00 1426.0 1055 69.0
Oeu028379.4 Olea europaea HOM05D004874 ORTHO05D006796 0.0e+00 1421.8 1132 63.2
ECA238G3208 Erigeron canadensis HOM05D004874 ORTHO05D006796 0.0e+00 1417.9 1033 67.3
Lalb_Chr13g0296191 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 1413.3 1034 67.2
CAN.G1728.1 Capsicum annuum HOM05D004874 ORTHO05D006796 0.0e+00 1411.0 1030 69.2
EL10Ac6g14746 Beta vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 1407.1 1113 63.5
Peaxi162Scf00323g00112 Petunia axillaris HOM05D004874 ORTHO05D006796 0.0e+00 1406.7 1001 70.3
Migut.H02425 Erythranthe guttata HOM05D004874 ORTHO05D006796 0.0e+00 1404.8 1034 68.0
Sopen04g023580 Solanum pennellii HOM05D004874 ORTHO05D006796 0.0e+00 1403.7 1030 68.3
THA.LOC104804146 Tarenaya hassleriana HOM05D004874 ORTHO05D006796 0.0e+00 1401.3 1029 68.7
Solyc04g054140.4 Solanum lycopersicum HOM05D004874 ORTHO05D006796 0.0e+00 1400.2 1035 68.2
CARHR113090 Cardamine hirsuta HOM05D004874 ORTHO05D006796 0.0e+00 1397.9 1033 68.1
Carub.0004s0115 Capsella rubella HOM05D004874 ORTHO05D006796 0.0e+00 1395.9 1037 67.7
HanXRQChr14g0446191 Helianthus annuus HOM05D004874 ORTHO05D006796 0.0e+00 1392.9 1029 66.7
AT2G22010 Arabidopsis thaliana HOM05D004874 ORTHO05D006796 0.0e+00 1391.3 1035 67.2
AL4G11330 Arabidopsis lyrata HOM05D004874 ORTHO05D006796 0.0e+00 1386.7 1032 67.2
Lsat_1_v5_gn_2_65401 Lactuca sativa HOM05D004874 ORTHO05D006796 0.0e+00 1386.3 1031 66.7
Sp4g01070 Schrenkiella parvula HOM05D004874 ORTHO05D006796 0.0e+00 1385.2 1036 67.2
HanXRQChr10g0295251 Helianthus annuus HOM05D004874 ORTHO05D006796 0.0e+00 1384.4 1027 66.1
A09p57840 Brassica napus HOM05D004874 ORTHO05D006796 0.0e+00 1379.0 1040 67.6
C08p41080 Brassica napus HOM05D004874 ORTHO05D006796 0.0e+00 1377.5 1040 67.3
Sed0015455 Sechium edule HOM05D004874 ORTHO05D006796 0.0e+00 1376.7 1028 67.1
PGR102G1404 Punica granatum HOM05D004874 ORTHO05D006796 0.0e+00 1374.4 1029 66.6
BcaC07g41106 Brassica carinata HOM05D004874 ORTHO05D006796 0.0e+00 1374.0 1040 67.1
BolC8t51674H Brassica oleracea HOM05D004874 ORTHO05D006796 0.0e+00 1370.9 1046 66.9
BraA09t41177Z Brassica rapa HOM05D004874 ORTHO05D006796 0.0e+00 1370.9 1046 67.2
BcaB08g35028 Brassica carinata HOM05D004874 ORTHO05D006796 0.0e+00 1370.1 1037 66.7
AUR62016271 Chenopodium quinoa HOM05D004874 ORTHO05D006796 0.0e+00 1363.6 1035 65.2
AUR62003312 Chenopodium quinoa HOM05D004874 ORTHO05D006796 0.0e+00 1354.3 1035 64.8
MELO3C007488.2 Cucumis melo HOM05D004874 ORTHO05D006796 0.0e+00 1335.1 1034 65.7
Thhalv10000015m.g Eutrema salsugineum HOM05D004874 ORTHO05D006796 0.0e+00 1334.7 1035 65.5
Hund19660 Selenicereus undatus HOM05D004874 ORTHO05D006796 0.0e+00 1322.8 982 67.4
SGA_v2.0_scaffold2G01299 Striga asiatica HOM05D004874 ORTHO05D006796 0.0e+00 1318.5 1125 60.7
ATR0564G436 Amborella trichopoda HOM05D004874 ORTHO05D006796 0.0e+00 1300.4 1040 62.8
SalBow6G4347 Salvia bowleyana HOM05D004874 ORTHO05D006796 0.0e+00 1300.0 937 68.9
Aa31LG7G14640 Aethionema arabicum HOM05D004874 ORTHO05D006796 0.0e+00 1275.8 1030 64.0
DCAR_014257 Daucus carota HOM05D004874 ORTHO05D006796 0.0e+00 1256.1 1028 62.4
TAR376G0110 Trochodendron aralioides HOM05D004874 ORTHO05D006796 0.0e+00 1244.2 800 77.2
CiPaw.04G092800 Carya illinoinensis HOM05D004874 ORTHO05D006796 0.0e+00 1214.1 810 76.0
Zm00001eb328050 Zea mays HOM05D004874 ORTHO05D006796 0.0e+00 1196.8 1029 58.2
Nitab4.5_0000156g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 0.0e+00 1170.2 801 72.5
FAN10G0201 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1169.8 690 83.5
SEGI_33214 Sequoiadendron giganteum HOM05D004874 ORTHO05D006796 0.0e+00 1168.7 1035 56.8
CDE07G0820 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 0.0e+00 1147.1 1029 57.2
PGSC0003DMG400012951 Solanum tuberosum HOM05D004874 ORTHO05D006796 0.0e+00 1132.9 804 70.1
FAN06G3019 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1107.4 690 80.0
Oeu030684.1 Olea europaea HOM05D004874 ORTHO05D006796 0.0e+00 1101.3 759 70.4
Duzib147G0760 Durio zibethinus HOM05D004874 ORTHO05D006796 0.0e+00 1081.6 1033 56.4
unitig_899.g14600 Utricularia gibba HOM05D004874 ORTHO05D006796 0.0e+00 1077.0 1027 54.9
FAN01G2715 Fragaria x ananassa HOM05D004874 ORTHO05D006796 3.5e-309 1065.1 680 78.8
FAN06G4447 Fragaria x ananassa HOM05D004874 ORTHO05D006796 1.3e-303 1046.6 690 76.7
MSTRG.2539 Avicennia marina HOM05D004874 ORTHO05D006796 1.0e-300 1036.9 759 68.8
COL.COLO4_11028 Corchorus olitorius HOM05D004874 ORTHO05D006796 9.8e-296 1020.4 1033 54.8
CDE04G1796 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 7.2e-291 1004.2 982 54.0
SMO143G0116 Selaginella moellendorffii HOM05D004874 ORTHO05D006796 8.1e-266 921.0 1066 47.8
FvH4_7g04730 Fragaria vesca HOM05D004874 ORTHO05D006796 5.1e-260 901.7 539 82.2
Pp3c1_33900 Physcomitrium patens HOM05D004874 ORTHO05D006796 2.5e-259 899.4 1085 46.9
Pp3c2_2760 Physcomitrium patens HOM05D004874 ORTHO05D006796 1.1e-257 894.0 1084 46.7
Mapoly0047s0138 Marchantia polymorpha HOM05D004874 ORTHO05D006796 1.2e-256 890.6 1089 46.6
Ah.02g124400 Amaranthus hybridus HOM05D004874 ORTHO05D006796 2.1e-253 879.8 635 67.6
Pp3c17_14550 Physcomitrium patens HOM05D004874 ORTHO05D006796 2.2e-247 859.8 1081 45.3
FAN03G2613 Fragaria x ananassa HOM05D004874 ORTHO05D006796 1.1e-241 840.9 500 83.4
Lj2C562G3 Lonicera japonica HOM05D004874 ORTHO05D006796 5.3e-241 838.6 590 70.5
MBI02_g13022_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 2.0e-240 836.6 589 69.6
Cpa.g.sc196.7 Carica papaya HOM05D004874 ORTHO05D006796 1.2e-237 827.4 587 69.8
AagrBONN_evm.TU.Sc2ySwM_228.911 Anthoceros agrestis HOM05D004874 ORTHO05D006796 4.3e-235 818.9 901 50.6
HPP92_016848 Vanilla planifolia HOM05D004874 ORTHO05D006796 1.3e-223 780.8 627 62.5
vmacro12908 Vaccinium macrocarpon HOM05D004874 ORTHO05D006796 2.2e-215 753.4 536 69.8
Lj2A562T49 Lonicera japonica HOM05D004874 ORTHO05D006796 1.6e-192 677.6 477 69.8
CBR_g4334 Chara braunii HOM05D004874 ORTHO05D006796 5.2e-180 636.0 1037 38.6
MBI02_g44126_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 6.2e-133 479.6 365 67.1
Cc07_g14920 Coffea canephora HOM05D004874 ORTHO05D006796 9.9e-131 472.2 394 61.7
Cpa.g.sc196.6 Carica papaya HOM05D004874 ORTHO05D006796 6.4e-130 469.5 317 71.6
Ah.02g124390 Amaranthus hybridus HOM05D004874 ORTHO05D006796 2.7e-120 437.6 334 65.3
HPP92_016847 Vanilla planifolia HOM05D004874 ORTHO05D006796 9.6e-118 429.1 374 55.3
Oeu030685.1 Olea europaea HOM05D004874 ORTHO05D006796 6.5e-98 363.2 260 65.8
Os07g0626900 Oryza sativa ssp. japonica HOM05D004874 ORTHO05D006796 1.4e-79 302.4 263 57.8
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 2.9e-58 231.5 392 37.0
FvH4_7g04731 Fragaria vesca HOM05D004874 ORTHO05D006796 2.1e-56 225.3 125 84.8
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 2.3e-39 168.7 838 23.0
Nitab4.5_0010573g0010 Nicotiana tabacum HOM05D004874 ORTHO05D006796 8.9e-39 166.8 146 59.6
Solyc05g055570.3 Solanum lycopersicum HOM05D004874 ORTHO05D014502 4.9e-29 134.4 112 60.7
Sabra07G0068700 Salix brachista HOM05D004874 ORTHO05D006796 1.1e-25 123.2 438 27.4
HanXRQChr11g0324541 Helianthus annuus HOM05D004874 ORTHO05D006796 9.6e-25 120.2 78 67.9
Zm00001eb137300 Zea mays HOM05D004874 ORTHO05D006796 6.9e-15 87.4 68 60.3
Nitab4.5_0000904g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 2.0e-14 85.9 46 87.0
BcaC09g48952 Brassica carinata HOM05D004874 ORTHO05D014502 2.3e-10 72.4 53 64.2
BcaC06g36156 Brassica carinata HOM05D004874 ORTHO05D014502 5.1e-10 71.2 53 62.3
HanXRQChr11g0341101 Helianthus annuus HOM05D004874 ORTHO05D006796 6.7e-10 70.9 50 64.0
BcaC04g21885 Brassica carinata HOM05D004874 ORTHO05D014502 2.5e-09 68.9 56 57.1
HanXRQChr12g0385291 Helianthus annuus HOM05D004874 ORTHO05D006796 5.6e-09 67.8 39 79.5
Os03g0428000 Oryza sativa ssp. japonica HOM05D004874 ORTHO05D006796 2.8e-08 65.5 80 47.5
A01p36370 Brassica napus HOM05D004874 ORTHO05D014502 4.8e-08 64.7 48 62.5
A02p42430 Brassica napus HOM05D004874 ORTHO05D014502 4.8e-08 64.7 48 62.5
C07p07140 Brassica napus HOM05D004874 ORTHO05D014502 4.8e-08 64.7 48 62.5
BraA01t04208Z Brassica rapa HOM05D004874 ORTHO05D014502 4.8e-08 64.7 48 62.5
BraA02t09174Z Brassica rapa HOM05D004874 ORTHO05D014502 4.8e-08 64.7 48 62.5
C01p44130 Brassica napus HOM05D004874 ORTHO05D014502 8.1e-08 63.9 48 62.5
C09p26200 Brassica napus HOM05D004874 ORTHO05D014502 1.1e-07 63.5 48 62.5
BolC9t55523H Brassica oleracea HOM05D004874 ORTHO05D014502 1.1e-07 63.5 48 62.5
BolC7t41133H Brassica oleracea HOM05D004874 ORTHO05D014502 1.8e-07 62.8 48 60.4


User provided reference genes

Program Settings