Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO09G243 Micromonas commoda HOM05D004763 ORTHO05D007492 0.0e+00 1333.2 684 100.0
Pp3c22_12720 Physcomitrium patens HOM05D004763 ORTHO05D007492 7.6e-188 661.4 681 53.3
CBR_g31022 Chara braunii HOM05D004763 ORTHO05D007492 2.2e-187 659.8 679 52.6
BcaB06g26148 Brassica carinata HOM05D004763 ORTHO05D007492 8.7e-184 647.9 676 51.3
C05p43300 Brassica napus HOM05D004763 ORTHO05D007492 3.3e-183 646.0 674 51.0
BcaC05g28282 Brassica carinata HOM05D004763 ORTHO05D007492 4.3e-183 645.6 674 51.0
Lj3g0020649 Lotus japonicus HOM05D004763 ORTHO05D007492 5.7e-183 645.2 666 53.0
AT3G20780 Arabidopsis thaliana HOM05D004763 ORTHO05D007492 1.3e-182 644.0 674 51.3
AagrBONN_evm.TU.Sc2ySwM_344.3405 Anthoceros agrestis HOM05D004763 ORTHO05D007492 1.6e-182 643.7 665 52.2
AL3G34700 Arabidopsis lyrata HOM05D004763 ORTHO05D007492 1.1e-181 641.0 673 51.1
arahy.Tifrunner.gnm1.ann1.VYK1P0 Arachis hypogaea HOM05D004763 ORTHO05D007492 3.1e-181 639.4 665 51.9
Thhalv10020214m.g Eutrema salsugineum HOM05D004763 ORTHO05D007492 3.1e-181 639.4 681 50.7
Potri.003G211000 Populus trichocarpa HOM05D004763 ORTHO05D007492 3.1e-181 639.4 666 52.1
Sp3g18800 Schrenkiella parvula HOM05D004763 ORTHO05D007492 3.1e-181 639.4 674 50.9
arahy.Tifrunner.gnm1.ann1.P0K6XU Arachis hypogaea HOM05D004763 ORTHO05D007492 1.2e-180 637.5 665 51.7
Psat5g288480 Pisum sativum HOM05D004763 ORTHO05D007492 1.5e-180 637.1 665 52.3
arahy.Tifrunner.gnm1.ann1.GN3GFY Arachis hypogaea HOM05D004763 ORTHO05D007492 2.0e-180 636.7 665 51.7
SMO116G0144 Selaginella moellendorffii HOM05D004763 ORTHO05D007492 2.0e-180 636.7 669 51.4
Carub.0003s2074 Capsella rubella HOM05D004763 ORTHO05D007492 2.6e-180 636.3 674 50.6
Os09g0279600 Oryza sativa ssp. japonica HOM05D004763 ORTHO05D007492 3.4e-180 636.0 638 54.4
ATR0605G091 Amborella trichopoda HOM05D004763 ORTHO05D007492 5.9e-180 635.2 676 51.5
TPR.G18851 Trifolium pratense HOM05D004763 ORTHO05D007492 5.9e-180 635.2 645 53.5
Cre01.g019750 Chlamydomonas reinhardtii HOM05D004763 ORTHO05D007492 1.0e-179 634.4 695 49.8
CsaV3_4G023800 Cucumis sativus L. HOM05D004763 ORTHO05D007492 1.0e-179 634.4 668 51.6
Mapoly0042s0060 Marchantia polymorpha HOM05D004763 ORTHO05D007492 1.0e-179 634.4 666 52.4
Medtr2g098510 Medicago truncatula HOM05D004763 ORTHO05D007492 1.3e-179 634.0 665 52.3
THA.LOC104816912 Tarenaya hassleriana HOM05D004763 ORTHO05D007492 1.3e-179 634.0 673 50.8
A05p28000 Brassica napus HOM05D004763 ORTHO05D007492 1.7e-179 633.6 679 50.4
Glyma.13G342900 Glycine max HOM05D004763 ORTHO05D007492 3.8e-179 632.5 637 53.8
MELO3C014639.2 Cucumis melo HOM05D004763 ORTHO05D007492 5.0e-179 632.1 668 51.5
CANSAT54G1729 Cannabis sativa HOM05D004763 ORTHO05D007492 2.5e-178 629.8 678 51.2
Sabra03G0153800 Salix brachista HOM05D004763 ORTHO05D007492 3.2e-178 629.4 668 51.3
Sabra03G0156000 Salix brachista HOM05D004763 ORTHO05D007492 3.2e-178 629.4 668 51.3
Lalb_Chr14g0372291 Lupinus albus HOM05D004763 ORTHO05D007492 4.2e-178 629.0 671 51.6
PSO339G3791 Papaver somniferum HOM05D004763 ORTHO05D007492 4.2e-178 629.0 671 51.4
BraA05t21683Z Brassica rapa HOM05D004763 ORTHO05D007492 5.5e-178 628.6 689 49.9
Gorai.013G250000 Gossypium raimondii HOM05D004763 ORTHO05D007492 5.5e-178 628.6 672 50.4
Manes.14G014500 Manihot esculenta HOM05D004763 ORTHO05D007492 5.5e-178 628.6 678 51.3
VMungo1080G1755 Vigna mungo HOM05D004763 ORTHO05D007492 9.4e-178 627.9 637 53.2
Migut.D00558 Erythranthe guttata HOM05D004763 ORTHO05D007492 1.2e-177 627.5 682 50.1
Ciclev10014511m.g Citrus clementina HOM05D004763 ORTHO05D007492 2.1e-177 626.7 638 52.5
ECA238G4453 Erigeron canadensis HOM05D004763 ORTHO05D007492 2.1e-177 626.7 667 50.8
Thecc.09G223100 Theobroma cacao HOM05D004763 ORTHO05D007492 2.1e-177 626.7 670 50.6
Phvul.005G150500 Phaseolus vulgaris HOM05D004763 ORTHO05D007492 2.7e-177 626.3 637 52.9
Aqoxy1G00185 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 3.6e-177 625.9 671 51.0
CiPaw.14G125100 Carya illinoinensis HOM05D004763 ORTHO05D007492 7.9e-177 624.8 665 51.0
Nn7g36058 Nelumbo nucifera HOM05D004763 ORTHO05D007492 7.9e-177 624.8 673 51.4
HPP92_020536 Vanilla planifolia HOM05D004763 ORTHO05D007492 7.9e-177 624.8 646 52.2
BolC5t33062H Brassica oleracea HOM05D004763 ORTHO05D007492 1.4e-176 624.0 705 48.8
QL01p006243 Quercus lobata HOM05D004763 ORTHO05D007492 1.4e-176 624.0 647 51.8
Sopen01g009200 Solanum pennellii HOM05D004763 ORTHO05D007492 1.4e-176 624.0 632 52.4
Gohir.A13G215400 Gossypium hirsutum HOM05D004763 ORTHO05D007492 1.8e-176 623.6 672 50.1
Gohir.D13G219100 Gossypium hirsutum HOM05D004763 ORTHO05D007492 1.8e-176 623.6 676 50.0
Solyc01g014490.4 Solanum lycopersicum HOM05D004763 ORTHO05D007492 1.8e-176 623.6 632 52.4
HanXRQChr14g0451781 Helianthus annuus HOM05D004763 ORTHO05D007492 3.0e-176 622.9 665 50.8
TWI34G0672 Tripterygium wilfordii HOM05D004763 ORTHO05D007492 3.0e-176 622.9 666 51.5
GSVIVG01025336001 Vitis vinifera HOM05D004763 ORTHO05D007492 3.9e-176 622.5 665 51.1
CSS0044360 Camellia sinensis var. sinensis HOM05D004763 ORTHO05D007492 6.7e-176 621.7 668 50.9
CDE04G0998 Ceratophyllum demersum HOM05D004763 ORTHO05D007492 1.1e-175 620.9 663 50.8
COL.COLO4_09893 Corchorus olitorius HOM05D004763 ORTHO05D007492 1.1e-175 620.9 686 50.3
EL10Ac4g10318 Beta vulgaris HOM05D004763 ORTHO05D007492 1.5e-175 620.5 675 50.8
Cc01_g04070 Coffea canephora HOM05D004763 ORTHO05D007492 1.5e-175 620.5 668 50.9
Hund22081 Selenicereus undatus HOM05D004763 ORTHO05D007492 1.5e-175 620.5 685 50.5
arahy.Tifrunner.gnm1.ann1.X75IXN Arachis hypogaea HOM05D004763 ORTHO05D007492 2.5e-175 619.8 703 49.1
TAR623G1126 Trochodendron aralioides HOM05D004763 ORTHO05D007492 1.7e-174 617.1 672 50.3
Dinv36304 Davidia involucrata HOM05D004763 ORTHO05D007492 2.2e-174 616.7 665 50.7
Hma1.2p1_1169F.1_g263300 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 4.8e-174 615.5 676 50.4
AUR62019250 Chenopodium quinoa HOM05D004763 ORTHO05D007492 8.2e-174 614.8 679 51.1
Eucgr.B03662 Eucalyptus grandis HOM05D004763 ORTHO05D007492 8.2e-174 614.8 642 52.3
Sed0013957 Sechium edule HOM05D004763 ORTHO05D007492 8.2e-174 614.8 634 51.7
Sc09g0000480 Simmondsia chinensis HOM05D004763 ORTHO05D007492 1.4e-173 614.0 667 49.9
RcHm_v2.0_Chr5g0078101 Rosa chinensis HOM05D004763 ORTHO05D007492 6.9e-173 611.7 679 49.8
Prupe.6G018600 Prunus persica HOM05D004763 ORTHO05D007492 1.2e-172 610.9 671 49.9
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 2.0e-172 610.1 673 50.2
Peaxi162Scf00773g00119 Petunia axillaris HOM05D004763 ORTHO05D007492 2.0e-172 610.1 645 51.8
FvH4_3g43550 Fragaria vesca HOM05D004763 ORTHO05D007492 2.6e-172 609.8 679 49.3
Nitab4.5_0003069g0050 Nicotiana tabacum HOM05D004763 ORTHO05D007492 5.9e-172 608.6 640 52.0
MD03G1021100 Malus domestica HOM05D004763 ORTHO05D007492 7.7e-172 608.2 668 50.1
Cpa.g.sc84.111 Carica papaya HOM05D004763 ORTHO05D007492 8.5e-171 604.7 673 49.6
PGR102G0325 Punica granatum HOM05D004763 ORTHO05D007492 1.9e-170 603.6 666 50.2
Nitab4.5_0006575g0020 Nicotiana tabacum HOM05D004763 ORTHO05D007492 4.2e-170 602.4 656 51.1
FAN16G3272 Fragaria x ananassa HOM05D004763 ORTHO05D007492 6.1e-169 598.6 689 48.8
Aa31LG8G7590 Aethionema arabicum HOM05D004763 ORTHO05D007492 3.9e-168 595.9 660 49.2
SGA_v2.0_scaffold1G00797 Striga asiatica HOM05D004763 ORTHO05D007492 2.0e-167 593.6 716 46.9
Duzib150G1218 Durio zibethinus HOM05D004763 ORTHO05D007492 1.7e-166 590.5 695 47.9
PRCOL_00005940 Prasinoderma coloniale HOM05D004763 ORTHO05D007492 7.0e-157 558.5 696 46.6
Rhsim01G0189300 Rhododendron simsii HOM05D004763 ORTHO05D007492 2.2e-150 537.0 758 43.1
Lsat_1_v5_gn_2_101121 Lactuca sativa HOM05D004763 ORTHO05D007492 4.8e-150 535.8 683 45.8
CARHR096610 Cardamine hirsuta HOM05D004763 ORTHO05D007492 3.1e-149 533.1 612 48.2
Atru.chr3.2503 Acer truncatum HOM05D004763 ORTHO05D007492 2.0e-148 530.4 602 49.0
Aqoxy381s001 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 1.0e-147 528.1 668 46.3
Actinidia39377 Actinidia chinensis HOM05D004763 ORTHO05D007492 3.8e-147 526.2 646 46.4
Ah.04g161760 Amaranthus hybridus HOM05D004763 ORTHO05D007492 8.5e-147 525.0 664 45.6
Lj4g0010878 Lotus japonicus HOM05D004763 ORTHO05D007492 5.5e-146 522.3 666 46.5
Ca_01270_v3 Cicer arietinum L. HOM05D004763 ORTHO05D007492 1.8e-144 517.3 588 49.8
Hma1.2p1_1169F.1_g263310 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 4.9e-142 509.2 530 51.3
DCAR_024396 Daucus carota HOM05D004763 ORTHO05D007492 1.2e-140 504.6 628 45.7
Potri.T085401 Populus trichocarpa HOM05D004763 ORTHO05D007492 7.7e-140 501.9 446 58.3
FAN21G2003 Fragaria x ananassa HOM05D004763 ORTHO05D007492 1.5e-138 497.7 651 44.9
FAN11G2145 Fragaria x ananassa HOM05D004763 ORTHO05D007492 3.5e-132 476.5 716 41.6
FAN11G0713 Fragaria x ananassa HOM05D004763 ORTHO05D007492 1.8e-128 464.2 716 40.4
Lsat_1_v5_gn_1_127001 Lactuca sativa HOM05D004763 ORTHO05D007492 3.1e-120 436.8 517 46.2
Zm00001eb308780 Zea mays HOM05D004763 ORTHO05D007492 4.9e-118 429.5 485 49.1
SEGI_32015 Sequoiadendron giganteum HOM05D004763 ORTHO05D007492 8.9e-104 382.1 386 52.3
CAN.G646.1 Capsicum annuum HOM05D004763 ORTHO05D007492 5.3e-96 356.3 344 53.2
PGSC0003DMG401029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 1.2e-95 355.1 363 51.2
MBI01_g15753_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D007492 5.8e-95 352.8 342 55.0
ClCG02G023620 Citrullus lanatus HOM05D004763 ORTHO05D007492 7.1e-93 345.9 349 53.0
Lsat_1_v5_gn_1_127121 Lactuca sativa HOM05D004763 ORTHO05D007492 2.4e-88 330.9 552 38.8
Lju1319A4T15 Lonicera japonica HOM05D004763 ORTHO05D007492 1.5e-71 275.0 321 48.6
CAN.G442.1 Capsicum annuum HOM05D004763 ORTHO05D007492 5.9e-71 273.1 287 51.6
Lj1A366T12 Lonicera japonica HOM05D004763 ORTHO05D007492 1.2e-68 265.4 387 41.3
PGSC0003DMG402029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 1.2e-68 265.4 321 47.4
Lsat_1_v5_gn_1_126981 Lactuca sativa HOM05D004763 ORTHO05D007492 2.7e-68 264.2 485 35.9
Lj1C366G5 Lonicera japonica HOM05D004763 ORTHO05D007492 1.3e-57 228.8 313 45.0
SEGI_39045 Sequoiadendron giganteum HOM05D004763 ORTHO05D007492 6.1e-44 183.3 231 46.3
Lsat_1_v5_gn_1_126941 Lactuca sativa HOM05D004763 ORTHO05D007492 6.1e-36 156.8 150 53.3
Actinidia06319 Actinidia chinensis HOM05D004763 ORTHO05D007492 1.0e-35 156.0 213 44.1
Oeu036968.1 Olea europaea HOM05D004763 ORTHO05D007492 1.1e-32 146.0 104 62.5
Lju1319C4G3 Lonicera japonica HOM05D004763 ORTHO05D014896 1.1e-29 136.0 174 48.3
TPR.G29742 Trifolium pratense HOM05D004763 ORTHO05D007492 3.2e-29 134.4 242 37.2
TPR.G29743 Trifolium pratense HOM05D004763 ORTHO05D007492 7.5e-26 123.2 157 46.5
Lsat_1_v5_gn_1_127161 Lactuca sativa HOM05D004763 ORTHO05D007492 1.3e-22 112.5 166 41.6
Eucgr.B03660 Eucalyptus grandis HOM05D004763 ORTHO05D007492 5.0e-22 110.5 162 43.2
Ca_01269_v3 Cicer arietinum L. HOM05D000073 ORTHO05D000033 4.0e-19 100.9 87 57.5
PGSC0003DMG400012096 Solanum tuberosum HOM05D004763 ORTHO05D014896 6.4e-17 93.6 86 52.3
Lsat_1_v5_gn_1_127201 Lactuca sativa HOM05D004763 ORTHO05D007492 2.4e-16 91.7 144 37.5
Aa31LG8G7550 Aethionema arabicum HOM05D004763 ORTHO05D007492 3.9e-14 84.3 451 24.6
MBI09_g40619_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D019264 7.3e-13 80.1 90 50.0
MBI04_g09599_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D019264 2.8e-12 78.2 90 48.9
MBI02_g24793_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D019264 3.6e-12 77.8 90 48.9
PGSC0003DMG401017076 Solanum tuberosum HOM05D004763 ORTHO05D026177 3.1e-11 74.7 116 37.9
Thecc.03G073800 Theobroma cacao HOM05D004763 ORTHO05D019264 2.0e-10 72.0 102 39.2
Lsat_1_v5_gn_3_118680 Lactuca sativa HOM05D004763 ORTHO05D007492 7.5e-10 70.1 48 66.7
TWI60G1170 Tripterygium wilfordii HOM05D004763 ORTHO05D014896 1.3e-09 69.3 50 68.0
arahy.Tifrunner.gnm1.ann1.F7UR4V Arachis hypogaea HOM05D004763 ORTHO05D014896 4.9e-09 67.4 64 54.7
arahy.Tifrunner.gnm1.ann1.50I1V9 Arachis hypogaea HOM05D004763 ORTHO05D014896 1.1e-08 66.2 64 54.7
arahy.Tifrunner.gnm1.ann1.G1IAFF Arachis hypogaea HOM05D004763 ORTHO05D014896 1.1e-08 66.2 79 46.8
Lsat_1_v5_gn_1_125620 Lactuca sativa HOM05D004763 ORTHO05D007492 2.7e-07 61.6 180 28.3
PGSC0003DMG400019106 Solanum tuberosum HOM05D004763 ORTHO05D007492 3.5e-07 61.2 37 73.0
arahy.Tifrunner.gnm1.ann1.65KXHR Arachis hypogaea HOM05D004763 ORTHO05D014896 6.0e-07 60.5 46 60.9
Sopen04g015550 Solanum pennellii HOM05D000004 ORTHO05D000002 5.0e-06 57.4 73 43.8


User provided reference genes

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