Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI18_g06813_MAGBIO Magnolia biondii HOM05D037978 ORTHO05D015582 5.6e-102 374.4 205 100.0
MBI18_g40468_MAGBIO Magnolia biondii HOM05D037978 ORTHO05D015582 2.2e-37 159.8 199 50.8
MBI07_g09329_MAGBIO Magnolia biondii HOM05D005272 ORTHO05D015582 3.6e-16 89.4 55 89.1
MBI04_g11431_MAGBIO Magnolia biondii HOM05D000201 ORTHO05D001515 5.2e-15 85.5 51 80.4
MBI08_g27547_MAGBIO Magnolia biondii HOM05D037978 ORTHO05D015582 1.1e-09 67.8 41 75.6
MBI17_g19509_MAGBIO Magnolia biondii HOM05D000515 ORTHO05D003188 3.3e-09 66.2 38 84.2
Nn1g01082 Nelumbo nucifera HOM05D000201 ORTHO05D001515 3.3e-09 66.2 51 60.8
Nn6g34044 Nelumbo nucifera HOM05D000201 ORTHO05D001515 3.3e-09 66.2 51 60.8
DCAR_027294 Daucus carota HOM05D000515 ORTHO05D003188 5.6e-09 65.5 39 71.8
Thecc.03G257200 Theobroma cacao HOM05D000201 ORTHO05D001515 7.3e-09 65.1 43 69.8
CANSAT78G1604 Cannabis sativa HOM05D000515 ORTHO05D003188 1.2e-08 64.3 38 76.3
Gohir.A09G225200 Gossypium hirsutum HOM05D000515 ORTHO05D003188 1.6e-08 63.9 38 76.3
Gohir.D09G226900 Gossypium hirsutum HOM05D000515 ORTHO05D003188 1.6e-08 63.9 38 76.3
Gorai.006G248800 Gossypium raimondii HOM05D000515 ORTHO05D003188 1.6e-08 63.9 38 76.3
Lsat_1_v5_gn_3_122280 Lactuca sativa HOM05D000515 ORTHO05D003188 1.6e-08 63.9 38 76.3
Thecc.04G250100 Theobroma cacao HOM05D000515 ORTHO05D003188 1.6e-08 63.9 38 76.3
CDE11G0780 Ceratophyllum demersum HOM05D000201 ORTHO05D001515 2.1e-08 63.5 43 67.4
COL.COLO4_15829 Corchorus olitorius HOM05D000515 ORTHO05D003188 2.1e-08 63.5 38 73.7
Lj6g0012690 Lotus japonicus HOM05D000515 ORTHO05D003188 2.1e-08 63.5 38 73.7
Duzib212G0273 Durio zibethinus HOM05D000515 ORTHO05D003188 2.8e-08 63.2 38 73.7
Cfa008350 Carpinus fangiana HOM05D000515 ORTHO05D003188 3.6e-08 62.8 38 76.3
CDE02G4471 Ceratophyllum demersum HOM05D000201 ORTHO05D001515 4.7e-08 62.4 50 60.0
ECA240G0965 Erigeron canadensis HOM05D000515 ORTHO05D003188 4.7e-08 62.4 38 73.7
HanXRQChr13g0425471 Helianthus annuus HOM05D000515 ORTHO05D003188 4.7e-08 62.4 38 73.7
Potri.003G083400 Populus trichocarpa HOM05D000515 ORTHO05D003188 4.7e-08 62.4 38 73.7
QL06p016661 Quercus lobata HOM05D000515 ORTHO05D003188 4.7e-08 62.4 38 73.7
TWI53G1761 Tripterygium wilfordii HOM05D000515 ORTHO05D003188 6.1e-08 62.0 39 66.7
GSVIVG01027728001 Vitis vinifera HOM05D000515 ORTHO05D003188 6.1e-08 62.0 38 73.7
Lalb_Chr03g0037131 Lupinus albus HOM05D000515 ORTHO05D003188 8.0e-08 61.6 38 73.7
Nn1g02704 Nelumbo nucifera HOM05D000515 ORTHO05D003188 8.0e-08 61.6 38 73.7
TAR636G3138 Trochodendron aralioides HOM05D000515 ORTHO05D003188 8.0e-08 61.6 38 73.7
Aqoxy2G03615 Aquilegia oxysepala HOM05D000515 ORTHO05D003188 1.0e-07 61.2 38 71.1
MSTRG.4116 Avicennia marina HOM05D000515 ORTHO05D003188 1.0e-07 61.2 38 71.1
Haze_11335 Corylus avellana HOM05D000515 ORTHO05D003188 1.0e-07 61.2 33 78.8
Psat0s1076g0040 Pisum sativum HOM05D000515 ORTHO05D003188 1.0e-07 61.2 38 73.7
CSS0015653 Camellia sinensis var. sinensis HOM05D000515 ORTHO05D003188 1.4e-07 60.8 38 71.1
CiPaw.02G114700 Carya illinoinensis HOM05D000515 ORTHO05D003188 1.4e-07 60.8 38 71.1
Ca_11962_v3 Cicer arietinum L. HOM05D000515 ORTHO05D003188 1.4e-07 60.8 38 73.7
Lj6C660T6 Lonicera japonica HOM05D000515 ORTHO05D003188 1.4e-07 60.8 38 68.4
Cpa.g.c44807.1 Carica papaya HOM05D000515 ORTHO05D015582 1.8e-07 60.5 33 81.8
Cpa.g.sc44.89 Carica papaya HOM05D000515 ORTHO05D003188 1.8e-07 60.5 33 81.8
Nitab4.5_0002518g0040 Nicotiana tabacum HOM05D000201 ORTHO05D001515 1.8e-07 60.5 44 68.2
Medtr1g044120 Medicago truncatula HOM05D000515 ORTHO05D003188 2.3e-07 60.1 38 71.1
PSO063G1475 Papaver somniferum HOM05D000515 ORTHO05D003188 2.3e-07 60.1 38 71.1
ATR0215G002 Amborella trichopoda HOM05D000201 ORTHO05D001515 3.0e-07 59.7 45 57.8
CAN.G638.64 Capsicum annuum HOM05D000515 ORTHO05D003188 3.0e-07 59.7 33 78.8
Cc03_g05130 Coffea canephora HOM05D000515 ORTHO05D003188 3.0e-07 59.7 38 68.4
Nitab4.5_0001441g0010 Nicotiana tabacum HOM05D000515 ORTHO05D003188 3.0e-07 59.7 38 71.1
Peaxi162Scf00782g00007 Petunia axillaris HOM05D000515 ORTHO05D003188 3.0e-07 59.7 38 71.1
Potri.003G112700 Populus trichocarpa HOM05D000201 ORTHO05D001515 3.0e-07 59.7 44 63.6
Sopen08g027550 Solanum pennellii HOM05D000201 ORTHO05D001515 3.0e-07 59.7 47 57.4
PGSC0003DMG400004789 Solanum tuberosum HOM05D000201 ORTHO05D001515 3.0e-07 59.7 47 57.4
TAR375G0522 Trochodendron aralioides HOM05D000201 ORTHO05D001515 3.0e-07 59.7 45 53.3
TAR498G0001 Trochodendron aralioides HOM05D000201 ORTHO05D001515 3.0e-07 59.7 45 53.3
CsaV3_3G012370 Cucumis sativus L. HOM05D000515 ORTHO05D003188 4.0e-07 59.3 33 84.8
Dinv29887 Davidia involucrata HOM05D006440 ORTHO05D003188 4.0e-07 59.3 38 68.4
Duzib068G1141 Durio zibethinus HOM05D000201 ORTHO05D001515 4.0e-07 59.3 43 65.1
Manes.15G038300 Manihot esculenta HOM05D000515 ORTHO05D003188 4.0e-07 59.3 38 68.4
Sed0008142 Sechium edule HOM05D000515 ORTHO05D003188 4.0e-07 59.3 38 73.7
Sc22g0000700 Simmondsia chinensis HOM05D000201 ORTHO05D001515 4.0e-07 59.3 46 56.5
Migut.G00450 Erythranthe guttata HOM05D000515 ORTHO05D003188 5.2e-07 58.9 38 71.1
MD11G1195700 Malus domestica HOM05D000201 ORTHO05D001515 5.2e-07 58.9 51 58.8
Nitab4.5_0000038g0190 Nicotiana tabacum HOM05D000201 ORTHO05D001515 5.2e-07 58.9 47 59.6
Nitab4.5_0000993g0110 Nicotiana tabacum HOM05D000201 ORTHO05D001515 5.2e-07 58.9 73 49.3
PGR031G2990 Punica granatum HOM05D000201 ORTHO05D001515 5.2e-07 58.9 48 64.6
SGA_v2.0_scaffold101G29837 Striga asiatica HOM05D000515 ORTHO05D003188 5.2e-07 58.9 38 71.1
ATR0680G316 Amborella trichopoda HOM05D000515 ORTHO05D003188 6.8e-07 58.5 38 71.1
Duzib205G1333 Durio zibethinus HOM05D000201 ORTHO05D001515 6.8e-07 58.5 43 65.1
Glyma.20G087900 Glycine max HOM05D000515 ORTHO05D003188 6.8e-07 58.5 38 65.8
Gohir.A13G223100 Gossypium hirsutum HOM05D000515 ORTHO05D003188 6.8e-07 58.5 38 65.8
Gohir.D13G228100 Gossypium hirsutum HOM05D000515 ORTHO05D003188 6.8e-07 58.5 38 65.8
Gorai.013G258600 Gossypium raimondii HOM05D000515 ORTHO05D003188 6.8e-07 58.5 38 65.8
MD16G1213200 Malus domestica HOM05D000515 ORTHO05D003188 6.8e-07 58.5 38 71.1
Potri.001G120300 Populus trichocarpa HOM05D000201 ORTHO05D001515 6.8e-07 58.5 44 63.6
Prupe.1G034800 Prunus persica HOM05D000515 ORTHO05D003188 6.8e-07 58.5 38 71.1
TWI53G0250 Tripterygium wilfordii HOM05D000515 ORTHO05D003188 6.8e-07 58.5 39 61.5
vmacro08449 Vaccinium macrocarpon HOM05D000515 ORTHO05D003188 6.8e-07 58.5 38 68.4
ATR1152G083 Amborella trichopoda HOM05D000201 ORTHO05D001515 8.9e-07 58.2 51 58.8
ClCG05G007380 Citrullus lanatus HOM05D000201 ORTHO05D001515 8.9e-07 58.2 49 55.1
MELO3C006446.2 Cucumis melo HOM05D000515 ORTHO05D003188 8.9e-07 58.2 33 78.8
Nitab4.5_0000436g0150 Nicotiana tabacum HOM05D000515 ORTHO05D003188 8.9e-07 58.2 38 68.4
Solyc03g005460.4 Solanum lycopersicum HOM05D000515 ORTHO05D003188 8.9e-07 58.2 32 81.2
Sopen03g001490 Solanum pennellii HOM05D000515 ORTHO05D003188 8.9e-07 58.2 32 81.2
EL10Ac5g13008 Beta vulgaris HOM05D000201 ORTHO05D001515 1.5e-06 57.4 46 56.5
Cc01_g09920 Coffea canephora HOM05D000515 ORTHO05D003188 1.5e-06 57.4 38 68.4
COL.COLO4_19278 Corchorus olitorius HOM05D000515 ORTHO05D003188 1.5e-06 57.4 38 63.2
Haze_07848 Corylus avellana HOM05D000201 ORTHO05D001515 1.5e-06 57.4 51 58.8
Duzib084G0129 Durio zibethinus HOM05D000201 ORTHO05D001515 1.5e-06 57.4 45 60.0
FvH4_4g03180 Fragaria vesca HOM05D000515 ORTHO05D003188 1.5e-06 57.4 38 65.8
FAN12G3454 Fragaria x ananassa HOM05D000515 ORTHO05D003188 1.5e-06 57.4 38 65.8
RcHm_v2.0_Chr4g0391801 Rosa chinensis HOM05D000515 ORTHO05D003188 1.5e-06 57.4 38 65.8
arahy.Tifrunner.gnm1.ann1.BW40WK Arachis hypogaea HOM05D000515 ORTHO05D003188 2.0e-06 57.0 38 65.8
arahy.Tifrunner.gnm1.ann1.H93RW9 Arachis hypogaea HOM05D000515 ORTHO05D003188 2.0e-06 57.0 38 65.8
Rhsim04G0188100 Rhododendron simsii HOM05D000515 ORTHO05D003188 2.0e-06 57.0 38 65.8
arahy.Tifrunner.gnm1.ann1.37RT6C Arachis hypogaea HOM05D000515 ORTHO05D003188 2.6e-06 56.6 38 63.2
arahy.Tifrunner.gnm1.ann1.ZX1X7E Arachis hypogaea HOM05D000515 ORTHO05D003188 2.6e-06 56.6 38 63.2
MSTRG.21300 Avicennia marina HOM05D000201 ORTHO05D001515 2.6e-06 56.6 43 62.8
Dinv10446 Davidia involucrata HOM05D000201 ORTHO05D002699 2.6e-06 56.6 43 67.4
Gohir.A09G195300 Gossypium hirsutum HOM05D000201 ORTHO05D001515 2.6e-06 56.6 42 61.9
Gohir.D09G189900 Gossypium hirsutum HOM05D000201 ORTHO05D001515 2.6e-06 56.6 42 61.9
Gorai.006G212500 Gossypium raimondii HOM05D000201 ORTHO05D001515 2.6e-06 56.6 42 61.9
Peaxi162Scf00002g00813 Petunia axillaris HOM05D000201 ORTHO05D001515 2.6e-06 56.6 46 56.5
PGSC0003DMG400013449 Solanum tuberosum HOM05D000515 ORTHO05D003188 2.6e-06 56.6 32 75.0
SGA_v2.0_scaffold29G12095 Striga asiatica HOM05D000201 ORTHO05D001515 2.6e-06 56.6 42 64.3
Actinidia40072 Actinidia chinensis HOM05D000515 ORTHO05D003188 3.4e-06 56.2 38 65.8
EL10Ac9g21058 Beta vulgaris HOM05D000515 ORTHO05D003188 3.4e-06 56.2 39 66.7
Cfa012775 Carpinus fangiana HOM05D000201 ORTHO05D001515 3.4e-06 56.2 44 61.4
ClCG05G004470 Citrullus lanatus HOM05D000515 ORTHO05D003188 3.4e-06 56.2 33 78.8
Dinv22952 Davidia involucrata HOM05D000201 ORTHO05D001515 3.4e-06 56.2 51 49.0
ECA233G2159 Erigeron canadensis HOM05D000515 ORTHO05D003188 3.4e-06 56.2 38 63.2
PGR119G2058 Punica granatum HOM05D000515 ORTHO05D003188 3.4e-06 56.2 38 65.8
VMungo0720G2274 Vigna mungo HOM05D000515 ORTHO05D003188 3.4e-06 56.2 38 60.5
Aa31sc16G220 Aethionema arabicum HOM05D000201 ORTHO05D001515 4.4e-06 55.8 49 57.1
AL8G16770 Arabidopsis lyrata HOM05D000515 ORTHO05D003188 4.4e-06 55.8 38 68.4
Ca_07410_v3 Cicer arietinum L. HOM05D000201 ORTHO05D001515 4.4e-06 55.8 53 49.1
FAN05G1356 Fragaria x ananassa HOM05D000515 ORTHO05D003188 4.4e-06 55.8 39 64.1
Gohir.D12G220800 Gossypium hirsutum HOM05D000201 ORTHO05D001515 4.4e-06 55.8 43 60.5
Gorai.008G236600 Gossypium raimondii HOM05D000201 ORTHO05D001515 4.4e-06 55.8 43 60.5
Lj2A1115G86 Lonicera japonica HOM05D000201 ORTHO05D015582 4.4e-06 55.8 38 65.8
Pp3c5_4990 Physcomitrium patens HOM05D000515 ORTHO05D003188 4.4e-06 55.8 39 64.1
Pp3c5_5006 Physcomitrium patens HOM05D000515 ORTHO05D003188 4.4e-06 55.8 39 64.1
Solyc11g066790.2 Solanum lycopersicum HOM05D000515 ORTHO05D003188 4.4e-06 55.8 38 65.8
Sopen11g026510 Solanum pennellii HOM05D000515 ORTHO05D003188 4.4e-06 55.8 38 65.8
Zm00001eb176980 Zea mays HOM05D000515 ORTHO05D003188 4.4e-06 55.8 38 65.8
AT5G43530 Arabidopsis thaliana HOM05D000515 ORTHO05D003188 5.7e-06 55.5 38 65.8
arahy.Tifrunner.gnm1.ann1.PT1YSW Arachis hypogaea HOM05D000201 ORTHO05D001515 5.7e-06 55.5 47 61.7
arahy.Tifrunner.gnm1.ann1.UHTW6S Arachis hypogaea HOM05D000201 ORTHO05D001515 5.7e-06 55.5 50 54.0
BcaC06g31693 Brassica carinata HOM05D000515 ORTHO05D003188 5.7e-06 55.5 38 65.8
C07p26160 Brassica napus HOM05D000515 ORTHO05D003188 5.7e-06 55.5 38 65.8
Carub.0008s0509 Capsella rubella HOM05D000515 ORTHO05D003188 5.7e-06 55.5 38 65.8
CAN.G120.8 Capsicum annuum HOM05D000201 ORTHO05D001515 5.7e-06 55.5 49 51.0
CARHR180100 Cardamine hirsuta HOM05D000515 ORTHO05D003188 5.7e-06 55.5 38 65.8
CARHR232650 Cardamine hirsuta HOM05D000201 ORTHO05D001515 5.7e-06 55.5 46 60.9
Cpa.g.sc29.122 Carica papaya HOM05D000201 ORTHO05D001515 5.7e-06 55.5 45 60.0
Ciclev10014680m.g Citrus clementina HOM05D000201 ORTHO05D001515 5.7e-06 55.5 42 57.1
Lsat_1_v5_gn_6_42721 Lactuca sativa HOM05D000515 ORTHO05D003188 5.7e-06 55.5 38 60.5
Nitab4.5_0004782g0030 Nicotiana tabacum HOM05D000201 ORTHO05D001515 5.7e-06 55.5 42 59.5
Phvul.007G272200 Phaseolus vulgaris HOM05D000515 ORTHO05D003188 5.7e-06 55.5 38 60.5
QL01p013986 Quercus lobata HOM05D000515 ORTHO05D003188 5.7e-06 55.5 38 65.8
Hund14606 Selenicereus undatus HOM05D000201 ORTHO05D001515 5.7e-06 55.5 39 61.5
Sc16g0009580 Simmondsia chinensis HOM05D000201 ORTHO05D001515 5.7e-06 55.5 45 55.6
Solyc08g079090.4 Solanum lycopersicum HOM05D000201 ORTHO05D001515 5.7e-06 55.5 47 53.2
Aa31LG1G12930 Aethionema arabicum HOM05D000515 ORTHO05D003188 7.5e-06 55.1 38 65.8
Aqoxy7G00720 Aquilegia oxysepala HOM05D000201 ORTHO05D001515 7.5e-06 55.1 51 51.0
Thhalv10012547m.g Eutrema salsugineum HOM05D000515 ORTHO05D003188 7.5e-06 55.1 38 63.2
MBI17_g39182_MAGBIO Magnolia biondii HOM05D000515 ORTHO05D003188 7.5e-06 55.1 38 63.2
Manes.04G010200 Manihot esculenta HOM05D000515 ORTHO05D003188 7.5e-06 55.1 38 65.8
Cfa010625 Carpinus fangiana HOM05D000201 ORTHO05D001515 9.8e-06 54.7 45 57.8
AUR62023957 Chenopodium quinoa HOM05D000515 ORTHO05D003188 9.8e-06 54.7 39 64.1
AUR62031753 Chenopodium quinoa HOM05D000515 ORTHO05D003188 9.8e-06 54.7 39 64.1
MELO3C006813.2 Cucumis melo HOM05D000201 ORTHO05D001515 9.8e-06 54.7 49 51.0
Dinv21598 Davidia involucrata HOM05D000201 ORTHO05D001515 9.8e-06 54.7 48 54.2
Gohir.A07G090100 Gossypium hirsutum HOM05D000201 ORTHO05D001515 9.8e-06 54.7 46 60.9
RcHm_v2.0_Chr2g0174191 Rosa chinensis HOM05D000515 ORTHO05D003188 9.8e-06 54.7 38 65.8
Sopen09g021780 Solanum pennellii HOM05D000201 ORTHO05D001515 9.8e-06 54.7 48 52.1
SGA_v2.0_scaffold2G01190 Striga asiatica HOM05D000201 ORTHO05D001515 9.8e-06 54.7 53 56.6
THA.LOC104810894 Tarenaya hassleriana HOM05D000515 ORTHO05D003188 9.8e-06 54.7 38 65.8
VMungo1080G0388 Vigna mungo HOM05D000515 ORTHO05D003188 9.8e-06 54.7 38 63.2


User provided reference genes

Program Settings