Gene: FAN12G3454
General Information
Structural Information
- Species Fragaria x ananassa
- Gene Identifier FAN12G3454
- Transcript Identifier FAN12G3454.1
- Gene Type Coding gene
- Location Fvb4-3 : 29898997-29913552 : negative
Gene Family Information
- ID HOM05D000515
- #Genes/#Species 1048/100
- Phylogenetic origin
- ID ORTHO05D003188
- #Genes/#Species 239/96
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- id maker-Fvb4-3-snap-gene-299.39.v1.0.a1
- pacid 50473369
Descriptions
- Description PF00097//PF00176//PF00271//PF08797 - Zinc finger, C3HC4 type (RING finger) (zf-C3HC4) // SNF2 family N-terminal domain (SNF2_N) // Helicase conserved C-terminal domain (Helicase_C) // HIRAN domain (HIRAN)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0008270 | IEA | InterPro | zinc ion binding | |
| GO:0016818 | IEA | InterPro | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | |
| GO:0046872 | IEA | InterPro | metal ion binding | |
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0070615 | IEA | InterPro | nucleosome-dependent ATPase activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009941 | ISO | PLAZA Integrative Orthology | chloroplast envelope | AT5G43530 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR014905 | HIRAN domain |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| IPR001650 | Helicase, C-terminal |
| IPR018957 | Zinc finger, C3HC4 RING-type |
| IPR001841 | Zinc finger, RING-type |
| IPR014001 | Helicase superfamily 1/2, ATP-binding domain |
| IPR027370 | RING-type zinc-finger, LisH dimerisation motif |
| IPR000330 | SNF2, N-terminal |
| IPR038718 | SNF2-like, N-terminal domain superfamily |
| Mapman id | Description |
|---|---|
| 12.4.8.3.1 | Chromatin organisation.nucleosome remodeling.other chromatin remodeling activities.Rad5/16-like group.chromatin remodeling factor (Rad5) |