Gene: Sopen11g026510

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen11g026510
  • Transcript Identifier Sopen11g026510.1
  • Gene Type Coding gene
  • Location Spenn-ch11 : 62294974-62304377 : positive

Gene Family Information

  • ID HOM05D000515
  • #Genes/#Species 1048/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen11g026510.1

Descriptions

  • Description DNA repair gene. gamma-radiation hypersensitive (RAD5) involved in stable transformation and T-DNA transfer | RAD5 | FUNCTIONS IN: in 6 functions | INVOLVED IN: DNA mediated transformation | EXPRESSED IN: embryo, sperm cell, seed | EXPRESSED DURING: E expanded cotyledon stage, D bilateral stage | CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site , Zinc finger, RING-type , Zinc finger, C3HC4 RING-type , DEAD-like helicase, N-terminal , DNA/RNA helicase, C-terminal , Helicase, superfamily 1/2, ATP-binding domain , HIP116, Rad5p N-terminal , SNF2-related | BEST Arabidopsis thaliana protein match is: Helicase protein with RING/U-box domain
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009294
ISO
PLAZA Integrative OrthologyDNA mediated transformation AT5G22750
GO:0036297
ISO
PLAZA Integrative Orthologyinterstrand cross-link repair AT5G22750
GO:0000724
ISO
PLAZA Integrative Orthologydouble-strand break repair via homologous recombination AT5G22750
GO:0045003
ISO
PLAZA Integrative Orthologydouble-strand break repair via synthesis-dependent strand annealing AT5G22750

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005524
IEA
InterProATP binding
GO:0070615
IEA
InterPronucleosome-dependent ATPase activity
GO:0003676
IEA
InterPronucleic acid binding
GO:0008270
IEA
InterProzinc ion binding
GO:0016818
IEA
InterProhydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0046872
IEA
InterPrometal ion binding

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001650 Helicase, C-terminal
IPR038718 SNF2-like, N-terminal domain superfamily
IPR000330 SNF2, N-terminal
IPR014905 HIRAN domain
IPR018957 Zinc finger, C3HC4 RING-type
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR001841 Zinc finger, RING-type
Mapman id Description
12.4.8.3.1 Chromatin organisation.nucleosome remodeling.other chromatin remodeling activities.Rad5/16-like group.chromatin remodeling factor (Rad5)