Gene: Cc01_g09920
General Information
Structural Information
- Species Coffea canephora
- Gene Identifier Cc01_g09920
- Transcript Identifier Cc01_g09920.1
- Gene Type Coding gene
- Location chr1 : 28578953-28585887 : negative
Gene Family Information
- ID HOM05D000515
- #Genes/#Species 1048/100
- Phylogenetic origin
- ID ORTHO05D003188
- #Genes/#Species 239/96
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- UniProtKB F6GW58
- UniProtKB Q6JJ38
- UniProtKB Q9FNI6
- UniProtKB Q9FIY7
- UniProtKB Q4IJ84
- UniProtKB B9SN70
- id GSCOCG00024064001
Descriptions
- Description Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009294 | ISO | PLAZA Integrative Orthology | DNA mediated transformation | AT5G22750 |
| GO:0036297 | ISO | PLAZA Integrative Orthology | interstrand cross-link repair | AT5G22750 |
| GO:0000724 | ISO | PLAZA Integrative Orthology | double-strand break repair via homologous recombination | AT5G22750 |
| GO:0045003 | ISO | PLAZA Integrative Orthology | double-strand break repair via synthesis-dependent strand annealing | AT5G22750 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0046872 | IEA | InterPro | metal ion binding | |
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0070615 | IEA | InterPro | nucleosome-dependent ATPase activity | |
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0008270 | IEA | InterPro | zinc ion binding | |
| GO:0016818 | IEA | InterPro | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009941 | ISO | PLAZA Integrative Orthology | chloroplast envelope | AT5G43530 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR001841 | Zinc finger, RING-type |
| IPR001650 | Helicase, C-terminal |
| IPR038718 | SNF2-like, N-terminal domain superfamily |
| IPR018957 | Zinc finger, C3HC4 RING-type |
| IPR014001 | Helicase superfamily 1/2, ATP-binding domain |
| IPR000330 | SNF2, N-terminal |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| IPR014905 | HIRAN domain |
| Mapman id | Description |
|---|---|
| 12.4.8.3.1 | Chromatin organisation.nucleosome remodeling.other chromatin remodeling activities.Rad5/16-like group.chromatin remodeling factor (Rad5) |