Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lju50A20G7 Lonicera japonica HOM05D007201 ORTHO05D009122 1.2e-204 716.5 417 100.0
CSS0027843 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 1.2e-106 391.0 424 59.2
Rhsim03G0269700 Rhododendron simsii HOM05D007201 ORTHO05D009122 2.8e-100 369.8 416 54.1
Actinidia03796 Actinidia chinensis HOM05D007201 ORTHO05D009122 6.2e-100 368.6 424 55.4
DCAR_019970 Daucus carota HOM05D002293 ORTHO05D005475 2.0e-90 337.0 407 52.6
TAR626G0209 Trochodendron aralioides HOM05D007201 ORTHO05D009122 3.4e-90 336.3 416 49.0
Cc06_g23490 Coffea canephora HOM05D007201 ORTHO05D009122 1.3e-89 334.3 449 51.2
GSVIVG01034266001 Vitis vinifera HOM05D007201 ORTHO05D009122 1.5e-85 320.9 406 55.4
Dinv26498 Davidia involucrata HOM05D007201 ORTHO05D009122 2.8e-84 316.6 422 50.9
Haze_21242 Corylus avellana HOM05D007201 ORTHO05D009122 5.3e-83 312.4 427 49.6
Thecc.09G202300 Theobroma cacao HOM05D007201 ORTHO05D009122 2.6e-82 310.1 420 51.2
Cfa012872 Carpinus fangiana HOM05D007201 ORTHO05D009122 5.9e-82 308.9 423 49.2
Prupe.1G000600 Prunus persica HOM05D007201 ORTHO05D009122 7.7e-82 308.5 433 48.5
Ciclev10008517m.g Citrus clementina HOM05D007201 ORTHO05D009122 2.7e-79 300.1 407 47.4
QL11p005700 Quercus lobata HOM05D007201 ORTHO05D009122 1.4e-78 297.7 427 44.0
CiPaw.15G000100 Carya illinoinensis HOM05D007201 ORTHO05D009122 8.8e-78 295.0 428 49.3
Solyc12g009390.2 Solanum lycopersicum HOM05D007201 ORTHO05D009122 3.3e-77 293.1 448 49.8
MD04G1000600 Malus domestica HOM05D007201 ORTHO05D009122 5.7e-77 292.4 423 47.3
PGSC0003DMG400002893 Solanum tuberosum HOM05D007201 ORTHO05D009122 1.3e-76 291.2 444 48.4
Atru.chr7.298 Acer truncatum HOM05D007201 ORTHO05D009122 1.1e-75 288.1 419 45.6
Manes.02G222200 Manihot esculenta HOM05D007201 ORTHO05D009122 2.4e-75 287.0 429 44.1
vmacro22702 Vaccinium macrocarpon HOM05D007201 ORTHO05D009122 2.4e-75 287.0 519 39.3
Gorai.012G009900 Gossypium raimondii HOM05D007201 ORTHO05D009122 1.5e-74 284.3 421 48.0
Sopen12g004380 Solanum pennellii HOM05D007201 ORTHO05D009122 1.9e-72 277.3 436 50.0
CSS0027553 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 4.2e-72 276.2 296 58.1
HanXRQChr10g0309261 Helianthus annuus HOM05D007201 ORTHO05D009122 1.2e-71 274.6 305 57.4
Gohir.D04G008200 Gossypium hirsutum HOM05D007201 ORTHO05D009122 2.7e-71 273.5 417 48.0
CSS0037159 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 7.9e-71 271.9 332 55.4
Lsat_1_v5_gn_5_80700 Lactuca sativa HOM05D007201 ORTHO05D009122 7.9e-71 271.9 425 45.2
MELO3C010035.2 Cucumis melo HOM05D007201 ORTHO05D009122 1.4e-70 271.2 429 43.6
Nn8g41282 Nelumbo nucifera HOM05D007201 ORTHO05D009122 3.9e-70 269.6 416 46.9
COL.COLO4_09000 Corchorus olitorius HOM05D007201 ORTHO05D009122 5.2e-70 269.2 432 45.1
CsaV3_1G044360 Cucumis sativus L. HOM05D007201 ORTHO05D009122 2.0e-69 267.3 434 43.1
PSO339G5324 Papaver somniferum HOM05D007201 ORTHO05D009122 9.7e-69 265.0 419 46.3
Sc10g0006090 Simmondsia chinensis HOM05D007201 ORTHO05D009122 8.2e-68 261.9 422 45.7
ECA234G1264 Erigeron canadensis HOM05D007201 ORTHO05D009122 4.1e-67 259.6 427 44.0
ECA240G0013 Erigeron canadensis HOM05D006383 ORTHO05D007815 5.3e-67 259.2 442 43.4
Sabra06G0061200 Salix brachista HOM05D007201 ORTHO05D009122 9.1e-67 258.5 465 43.2
FvH4_4g00131 Fragaria vesca HOM05D007201 ORTHO05D009122 2.0e-66 257.3 427 42.6
Eucgr.C00055 Eucalyptus grandis HOM05D007201 ORTHO05D009122 7.7e-66 255.4 426 43.4
Potri.006G081100 Populus trichocarpa HOM05D007201 ORTHO05D009122 7.7e-66 255.4 461 41.4
RcHm_v2.0_Chr4g0384751 Rosa chinensis HOM05D007201 ORTHO05D009122 5.0e-65 252.7 423 41.4
CAN.G1591.3 Capsicum annuum HOM05D007201 ORTHO05D009122 1.9e-64 250.8 211 66.4
Cpa.g.sc46.114 Carica papaya HOM05D007201 ORTHO05D009122 2.5e-64 250.4 442 44.3
FAN12G0236 Fragaria x ananassa HOM05D007201 ORTHO05D009122 1.2e-63 248.1 424 40.6
SGA_v2.0_scaffold21G09583 Striga asiatica HOM05D007201 ORTHO05D009122 1.6e-63 247.7 482 43.4
Hund22525 Selenicereus undatus HOM05D007201 ORTHO05D009122 1.4e-62 244.6 430 42.3
Nitab4.5_0000073g0490 Nicotiana tabacum HOM05D007201 ORTHO05D009122 1.5e-61 241.1 458 45.9
Peaxi162Scf00047g02450 Petunia axillaris HOM05D007201 ORTHO05D009122 4.4e-61 239.6 406 42.6
arahy.Tifrunner.gnm1.ann1.X4HTYC Arachis hypogaea HOM05D007201 ORTHO05D009122 2.4e-59 233.8 442 47.3
Lj3g0009807 Lotus japonicus HOM05D007201 ORTHO05D009122 1.6e-58 231.1 429 42.4
arahy.Tifrunner.gnm1.ann1.G7GJBK Arachis hypogaea HOM05D007201 ORTHO05D009122 1.1e-56 224.9 443 45.6
Phvul.011G018600 Phaseolus vulgaris HOM05D007201 ORTHO05D009122 1.9e-56 224.2 426 40.8
VMungo1127G0228 Vigna mungo HOM05D007201 ORTHO05D009122 1.9e-56 224.2 439 41.0
EL10Ac2g03602 Beta vulgaris HOM05D007201 ORTHO05D009122 3.2e-56 223.4 478 37.9
PGR142G4385 Punica granatum HOM05D007201 ORTHO05D009122 3.2e-56 223.4 418 39.7
CANSAT25G2467 Cannabis sativa HOM05D007201 ORTHO05D009122 2.7e-55 220.3 243 50.6
Aqoxy7G02518 Aquilegia oxysepala HOM05D007201 ORTHO05D009122 4.7e-55 219.5 437 38.7
Glyma.12G016400 Glycine max HOM05D007201 ORTHO05D009122 4.7e-55 219.5 439 42.4
Carub.0002s2218 Capsella rubella HOM05D007201 ORTHO05D009122 8.0e-55 218.8 422 40.5
Glyma.11G109000 Glycine max HOM05D007201 ORTHO05D009122 1.4e-54 218.0 429 43.6
HPP92_017373 Vanilla planifolia HOM05D007201 ORTHO05D009122 4.4e-53 213.0 426 40.8
THA.LOC104809224 Tarenaya hassleriana HOM05D007201 ORTHO05D009122 5.7e-53 212.6 426 41.1
FAN12G1512 Fragaria x ananassa HOM05D007201 ORTHO05D009122 1.7e-52 211.1 217 52.1
Nitab4.5_0004827g0030 Nicotiana tabacum HOM05D007201 ORTHO05D009122 2.2e-52 210.7 357 47.3
SHI24431 Sapria himalayana HOM05D007201 ORTHO05D009122 3.7e-52 209.9 229 54.1
TPR.G28027 Trifolium pratense HOM05D007201 ORTHO05D009122 4.8e-52 209.5 435 43.7
SEGI_05170 Sequoiadendron giganteum HOM05D007201 ORTHO05D009122 4.1e-51 206.5 427 35.8
Lalb_Chr19g0140031 Lupinus albus HOM05D007201 ORTHO05D009122 5.9e-50 202.6 414 40.1
C06p49330 Brassica napus HOM05D007201 ORTHO05D009122 2.3e-49 200.7 425 38.1
A07p40900 Brassica napus HOM05D007201 ORTHO05D009122 1.5e-48 198.0 417 39.8
ATR0626G320 Amborella trichopoda HOM05D007201 ORTHO05D009122 2.5e-48 197.2 444 36.7
Thhalv10018711m.g Eutrema salsugineum HOM05D007201 ORTHO05D009122 4.2e-48 196.4 438 37.2
Psat7g169960 Pisum sativum HOM05D007201 ORTHO05D009122 7.2e-48 195.7 434 38.5
AL2G35270 Arabidopsis lyrata HOM05D007201 ORTHO05D009122 9.5e-48 195.3 489 34.2
BraA07t31630Z Brassica rapa HOM05D007201 ORTHO05D009122 3.6e-47 193.4 429 40.3
Medtr4g078160 Medicago truncatula HOM05D007201 ORTHO05D009122 3.6e-47 193.4 441 41.5
Aqoxy37s001 Aquilegia oxysepala HOM05D007201 ORTHO05D009122 1.0e-46 191.8 318 40.6
BcaC08g47362 Brassica carinata HOM05D007201 ORTHO05D009122 5.2e-46 189.5 425 40.7
Sp5g30480 Schrenkiella parvula HOM05D007201 ORTHO05D009122 6.8e-46 189.1 459 34.0
CDE04G0352 Ceratophyllum demersum HOM05D007201 ORTHO05D009122 1.2e-45 188.3 388 35.8
AUR62027959 Chenopodium quinoa HOM05D007201 ORTHO05D009122 1.5e-45 188.0 192 57.3
CARHR068690 Cardamine hirsuta HOM05D007201 ORTHO05D009122 3.4e-45 186.8 440 37.0
Aa31LG4G5550 Aethionema arabicum HOM05D007201 ORTHO05D009122 4.4e-45 186.4 335 44.2
Zm00001eb227240 Zea mays HOM05D007201 ORTHO05D009122 2.2e-44 184.1 431 37.8
BolC6t39968H Brassica oleracea HOM05D007201 ORTHO05D009122 4.1e-43 179.9 452 38.9
AT1G75340 Arabidopsis thaliana HOM05D007201 ORTHO05D009122 9.2e-43 178.7 478 32.4
Duzib168G1263 Durio zibethinus HOM05D007201 ORTHO05D009122 9.2e-43 178.7 417 38.8
Os06g0704300 Oryza sativa ssp. japonica HOM05D007201 ORTHO05D009122 6.6e-41 172.6 438 35.8
FAN22G0406 Fragaria x ananassa HOM05D007201 ORTHO05D009122 5.6e-40 169.5 424 34.4
unitig_8.g3542 Utricularia gibba HOM05D007201 ORTHO05D009122 1.2e-39 168.3 422 34.6
Migut.L01609 Erythranthe guttata HOM05D007201 ORTHO05D009122 6.0e-34 149.4 401 35.9
Pp3c7_12210 Physcomitrium patens HOM05D007201 ORTHO05D009122 6.8e-30 136.0 463 30.2
FAN17G0247 Fragaria x ananassa HOM05D007201 ORTHO05D009122 9.8e-29 132.1 83 72.3
Oeu000954.1 Olea europaea HOM05D007201 ORTHO05D009122 2.4e-27 127.5 273 37.4
Mapoly0005s0044 Marchantia polymorpha HOM05D007201 ORTHO05D009122 3.0e-25 120.6 451 28.2
AagrBONN_evm.TU.Sc2ySwM_117.2509 Anthoceros agrestis HOM05D007201 ORTHO05D009122 7.5e-21 105.9 114 44.7
CSS0006520 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 1.3e-17 95.1 60 70.0
CSS0048863 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 1.3e-17 95.1 60 70.0
CBR_g15955 Chara braunii HOM05D007201 ORTHO05D009122 1.3e-17 95.1 204 42.2
CSS0038290 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 1.2e-13 82.0 88 67.0
CSS0018491 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 2.0e-13 81.3 89 62.9
ClCG03G010480 Citrullus lanatus HOM05D007201 ORTHO05D009122 2.9e-12 77.4 257 33.9
Gohir.A05G407400 Gossypium hirsutum HOM05D007201 ORTHO05D009122 3.2e-11 73.9 256 32.4
CSS0012149 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 4.3e-08 63.5 46 58.7
CSS0032596 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 4.3e-08 63.5 46 58.7
Ah.11g043520 Amaranthus hybridus HOM05D000145 ORTHO05D000115 1.6e-07 61.6 141 39.0
Sed0005629 Sechium edule HOM05D007201 ORTHO05D009122 1.4e-06 58.5 102 39.2
Cre06.g254700 Chlamydomonas reinhardtii HOM05D007201 ORTHO05D009122 4.0e-06 57.0 71 38.0


User provided reference genes

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