Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00351g0021948 Lotus japonicus HOM05D003148 ORTHO05D003894 2.6e-106 388.7 188 100.0
Lj4g0014990 Lotus japonicus HOM05D003148 ORTHO05D003894 3.6e-103 378.3 183 100.0
Medtr5g092100 Medicago truncatula HOM05D003148 ORTHO05D003894 2.0e-98 362.5 183 94.0
Psat2g015200 Pisum sativum HOM05D003148 ORTHO05D003894 3.8e-97 358.2 183 93.4
Phvul.008G265700 Phaseolus vulgaris HOM05D003148 ORTHO05D003894 8.5e-97 357.1 183 93.4
Ca_06307_v3 Cicer arietinum L. HOM05D003148 ORTHO05D003894 1.1e-96 356.7 183 92.9
Glyma.02G289700 Glycine max HOM05D003148 ORTHO05D003894 2.5e-96 355.5 183 94.0
Glyma.14G025300 Glycine max HOM05D003148 ORTHO05D003894 2.5e-96 355.5 183 94.0
Lalb_Chr04g0248571 Lupinus albus HOM05D003148 ORTHO05D003894 9.4e-96 353.6 183 92.3
VMungo0647G1963 Vigna mungo HOM05D003148 ORTHO05D003894 2.1e-95 352.4 183 92.9
TPR.G29117 Trifolium pratense HOM05D003148 ORTHO05D003894 8.8e-94 347.1 183 89.6
QL08p011843 Quercus lobata HOM05D003148 ORTHO05D003894 1.2e-90 336.7 183 88.0
Lalb_Chr18g0049911 Lupinus albus HOM05D003148 ORTHO05D003894 1.5e-90 336.3 183 88.0
Phvul.006G039400 Phaseolus vulgaris HOM05D003148 ORTHO05D003894 3.8e-89 331.6 183 87.4
Actinidia35330 Actinidia chinensis HOM05D003148 ORTHO05D003894 8.5e-89 330.5 183 86.9
CiPaw.11G187400 Carya illinoinensis HOM05D003148 ORTHO05D003894 1.1e-88 330.1 183 87.4
CiPaw.12G128200 Carya illinoinensis HOM05D003148 ORTHO05D003894 2.5e-88 328.9 183 86.9
Lj6g0019529 Lotus japonicus HOM05D003148 ORTHO05D003894 4.2e-88 328.2 183 85.2
arahy.Tifrunner.gnm1.ann1.FV4ICK Arachis hypogaea HOM05D003148 ORTHO05D003894 9.4e-88 327.0 183 85.8
arahy.Tifrunner.gnm1.ann1.SAW44B Arachis hypogaea HOM05D003148 ORTHO05D003894 9.4e-88 327.0 183 85.8
CSS0045288 Camellia sinensis var. sinensis HOM05D003148 ORTHO05D003894 3.6e-87 325.1 183 85.8
Ca_14812_v3 Cicer arietinum L. HOM05D003148 ORTHO05D003894 4.7e-87 324.7 183 85.8
Cfa020382 Carpinus fangiana HOM05D003148 ORTHO05D003894 3.9e-86 321.6 183 84.7
Psat5g183240 Pisum sativum HOM05D003148 ORTHO05D003894 3.9e-86 321.6 183 84.7
CDE05G0870 Ceratophyllum demersum HOM05D003148 ORTHO05D003894 5.2e-86 321.2 183 83.6
Rhsim04G0002300 Rhododendron simsii HOM05D003148 ORTHO05D003894 5.2e-86 321.2 183 83.1
RhsimUnG0252100 Rhododendron simsii HOM05D003148 ORTHO05D003894 5.2e-86 321.2 183 83.1
Medtr3g050140 Medicago truncatula HOM05D003148 ORTHO05D003894 1.1e-85 320.1 184 85.3
ATR0752G224 Amborella trichopoda HOM05D003148 ORTHO05D003894 1.5e-85 319.7 183 84.7
Hund19099 Selenicereus undatus HOM05D003148 ORTHO05D003894 2.0e-85 319.3 183 82.0
Cc05_g13530 Coffea canephora HOM05D003148 ORTHO05D003894 2.6e-85 318.9 183 84.2
Medtr3g050110 Medicago truncatula HOM05D003148 ORTHO05D003894 3.3e-85 318.5 184 84.8
MBI02_g28334_MAGBIO Magnolia biondii HOM05D003148 ORTHO05D003894 1.7e-84 316.2 183 83.1
TAR624G0080 Trochodendron aralioides HOM05D003148 ORTHO05D003894 2.8e-84 315.5 183 82.5
AUR62030324 Chenopodium quinoa HOM05D003148 ORTHO05D003894 3.7e-84 315.1 183 82.0
RcHm_v2.0_Chr5g0038301 Rosa chinensis HOM05D003148 ORTHO05D003894 4.8e-84 314.7 183 82.0
Sed0003151 Sechium edule HOM05D003148 ORTHO05D003894 8.2e-84 313.9 183 83.6
Actinidia09911 Actinidia chinensis HOM05D003148 ORTHO05D003894 1.1e-83 313.5 183 83.6
AUR62018343 Chenopodium quinoa HOM05D003148 ORTHO05D003894 1.1e-83 313.5 183 81.4
FvH4_3g22230 Fragaria vesca HOM05D003148 ORTHO05D003894 1.1e-83 313.5 183 81.4
FAN11G2520 Fragaria x ananassa HOM05D003148 ORTHO05D003894 1.1e-83 313.5 183 81.4
FAN16G3453 Fragaria x ananassa HOM05D003148 ORTHO05D003894 1.1e-83 313.5 183 81.4
EL10Ac3g07232 Beta vulgaris HOM05D003148 ORTHO05D003894 1.4e-83 313.2 183 80.9
Nn1g07107 Nelumbo nucifera HOM05D003148 ORTHO05D003894 1.4e-83 313.2 183 83.1
Potri.011G136900 Populus trichocarpa HOM05D003148 ORTHO05D003894 1.4e-83 313.2 183 83.1
Solyc07g064330.3 Solanum lycopersicum HOM05D003148 ORTHO05D003894 1.8e-83 312.8 183 83.6
Rhsim06G0215400 Rhododendron simsii HOM05D003148 ORTHO05D003894 2.4e-83 312.4 184 83.7
Sc19g0008220 Simmondsia chinensis HOM05D003148 ORTHO05D003894 2.4e-83 312.4 183 82.0
Sabra11G0122800 Salix brachista HOM05D003148 ORTHO05D003894 3.1e-83 312.0 183 82.5
Hma1.2p1_0938F.1_g239220 Hydrangea macrophylla HOM05D003148 ORTHO05D003894 4.1e-83 311.6 183 83.6
Eucgr.F00964 Eucalyptus grandis HOM05D003148 ORTHO05D003894 1.2e-82 310.1 183 81.4
Lj1C869T19 Lonicera japonica HOM05D003148 ORTHO05D003894 1.6e-82 309.7 183 82.5
Oeu042923.1 Olea europaea HOM05D003148 ORTHO05D003894 1.6e-82 309.7 183 80.9
Hund24589 Selenicereus undatus HOM05D003148 ORTHO05D003894 1.6e-82 309.7 183 79.2
Sopen07g032480 Solanum pennellii HOM05D003148 ORTHO05D003894 1.6e-82 309.7 183 83.1
TPR.G16586 Trifolium pratense HOM05D003148 ORTHO05D003894 1.6e-82 309.7 183 82.5
FAN21G1173 Fragaria x ananassa HOM05D003148 ORTHO05D003894 2.0e-82 309.3 183 80.9
PGR083G0390 Punica granatum HOM05D003148 ORTHO05D003894 2.0e-82 309.3 183 82.5
Atru.chr2.3280 Acer truncatum HOM05D003148 ORTHO05D003894 2.6e-82 308.9 183 82.0
Potri.001G421300 Populus trichocarpa HOM05D003148 ORTHO05D003894 3.5e-82 308.5 183 82.0
PGSC0003DMG402013919 Solanum tuberosum HOM05D003148 ORTHO05D003894 3.5e-82 308.5 183 83.1
Gohir.D01G065200 Gossypium hirsutum HOM05D003148 ORTHO05D003894 4.5e-82 308.1 183 80.9
Manes.14G165664 Manihot esculenta HOM05D003148 ORTHO05D003894 4.5e-82 308.1 183 82.5
vmacro11740 Vaccinium macrocarpon HOM05D003148 ORTHO05D003894 4.5e-82 308.1 184 82.6
Sabra16G0286100 Salix brachista HOM05D003148 ORTHO05D003894 5.9e-82 307.8 183 81.4
Gorai.002G086900 Gossypium raimondii HOM05D003148 ORTHO05D003894 7.7e-82 307.4 183 80.9
CAN.G337.107 Capsicum annuum HOM05D003148 ORTHO05D003894 1.0e-81 307.0 183 82.5
Thecc.07G043600 Theobroma cacao HOM05D003148 ORTHO05D003894 1.7e-81 306.2 183 81.4
GSVIVG01014163001 Vitis vinifera HOM05D003148 ORTHO05D003894 1.7e-81 306.2 183 82.0
Peaxi162Scf00450g00842 Petunia axillaris HOM05D003148 ORTHO05D003894 2.2e-81 305.8 183 82.5
Aqoxy1G03292 Aquilegia oxysepala HOM05D003148 ORTHO05D003894 2.9e-81 305.4 183 80.9
Gohir.A01G078100 Gossypium hirsutum HOM05D003148 ORTHO05D003894 8.5e-81 303.9 183 79.8
ClCG10G005550 Citrullus lanatus HOM05D003148 ORTHO05D003894 1.1e-80 303.5 183 80.3
DCAR_022553 Daucus carota HOM05D003148 ORTHO05D003894 1.1e-80 303.5 184 83.2
Ah.13g076880 Amaranthus hybridus HOM05D001433 ORTHO05D005172 1.5e-80 303.1 204 73.0
arahy.Tifrunner.gnm1.ann1.5UV8SN Arachis hypogaea HOM05D003148 ORTHO05D003894 1.5e-80 303.1 153 93.5
arahy.Tifrunner.gnm1.ann1.IVZB0M Arachis hypogaea HOM05D003148 ORTHO05D003894 1.5e-80 303.1 153 93.5
Lj8A168T100 Lonicera japonica HOM05D003148 ORTHO05D003894 1.5e-80 303.1 183 80.9
Nn1g03580 Nelumbo nucifera HOM05D003148 ORTHO05D003894 1.5e-80 303.1 183 82.0
HanXRQChr05g0159091 Helianthus annuus HOM05D003148 ORTHO05D003894 3.2e-80 302.0 183 78.7
HanXRQChr05g0159101 Helianthus annuus HOM05D003148 ORTHO05D003894 3.2e-80 302.0 183 78.7
HanXRQChr05g0159391 Helianthus annuus HOM05D003148 ORTHO05D003894 3.2e-80 302.0 183 78.7
MSTRG.14430 Avicennia marina HOM05D003148 ORTHO05D003894 4.2e-80 301.6 183 80.3
SGA_v2.0_scaffold9G05063 Striga asiatica HOM05D003148 ORTHO05D003894 4.2e-80 301.6 183 78.7
CsaV3_3G005270 Cucumis sativus L. HOM05D003148 ORTHO05D003894 5.5e-80 301.2 183 79.2
Duzib213G0065 Durio zibethinus HOM05D003148 ORTHO05D003894 1.6e-79 299.7 183 79.2
MD11G1221900 Malus domestica HOM05D003148 ORTHO05D003894 2.7e-79 298.9 183 79.8
Os04g0637400 Oryza sativa ssp. japonica HOM05D003148 ORTHO05D003894 2.7e-79 298.9 183 79.8
SEGI_28554 Sequoiadendron giganteum HOM05D003148 ORTHO05D003894 2.7e-79 298.9 183 78.1
TWI38G0810 Tripterygium wilfordii HOM05D003148 ORTHO05D003894 2.7e-79 298.9 183 80.9
unitig_52.g17354 Utricularia gibba HOM05D003148 ORTHO05D003894 3.6e-79 298.5 183 79.2
Aqoxy3G04136 Aquilegia oxysepala HOM05D003148 ORTHO05D003894 6.1e-79 297.7 183 80.3
Duzib170G0475 Durio zibethinus HOM05D003148 ORTHO05D003894 6.1e-79 297.7 183 78.1
Ciclev10007282m.g Citrus clementina HOM05D003148 ORTHO05D003894 1.8e-78 296.2 183 81.4
ECA246G3119 Erigeron canadensis HOM05D003148 ORTHO05D003894 3.0e-78 295.4 183 77.0
Aa31LG10G3300 Aethionema arabicum HOM05D003148 ORTHO05D003894 4.0e-78 295.0 183 79.8
Lsat_1_v5_gn_1_29100 Lactuca sativa HOM05D003148 ORTHO05D003894 4.0e-78 295.0 183 78.7
HPP92_009350 Vanilla planifolia HOM05D003148 ORTHO05D003894 5.2e-78 294.7 183 77.6
COL.COLO4_09635 Corchorus olitorius HOM05D003148 ORTHO05D003894 1.5e-77 293.1 183 79.2
AT1G50840 Arabidopsis thaliana HOM05D003148 ORTHO05D003894 2.0e-77 292.7 183 78.7
Cpa.g.sc97.33 Carica papaya HOM05D003148 ORTHO05D003894 2.0e-77 292.7 183 78.7
THA.LOC104817879 Tarenaya hassleriana HOM05D003148 ORTHO05D003894 3.3e-77 292.0 183 78.1
Zm00001eb431790 Zea mays HOM05D003148 ORTHO05D003894 3.3e-77 292.0 183 78.1
AL1G58530 Arabidopsis lyrata HOM05D003148 ORTHO05D003894 5.7e-77 291.2 183 78.1
Migut.H01840 Erythranthe guttata HOM05D003148 ORTHO05D003894 9.7e-77 290.4 183 77.6
CARHR096300 Cardamine hirsuta HOM05D003148 ORTHO05D003894 2.2e-76 289.3 183 78.7
PSO541G1561 Papaver somniferum HOM05D003148 ORTHO05D003894 3.7e-76 288.5 183 77.0
MSTRG.12966 Avicennia marina HOM05D003148 ORTHO05D003894 1.1e-75 287.0 183 76.0
BcaB02g11185 Brassica carinata HOM05D003148 ORTHO05D003894 1.4e-75 286.6 183 78.1
C05p43810 Brassica napus HOM05D003148 ORTHO05D003894 1.4e-75 286.6 183 77.6
BolC5t33096H Brassica oleracea HOM05D003148 ORTHO05D003894 1.4e-75 286.6 183 77.6
BraA05t21714Z Brassica rapa HOM05D003148 ORTHO05D003894 1.4e-75 286.6 183 77.6
Carub.0003s2050 Capsella rubella HOM05D003148 ORTHO05D003894 1.4e-75 286.6 183 78.1
CARHR040890 Cardamine hirsuta HOM05D003148 ORTHO05D003894 1.4e-75 286.6 184 77.2
Thhalv10011195m.g Eutrema salsugineum HOM05D003148 ORTHO05D003894 1.8e-75 286.2 183 77.6
PSO675G7850 Papaver somniferum HOM05D003148 ORTHO05D003894 1.8e-75 286.2 183 76.5
AL3G34360 Arabidopsis lyrata HOM05D003148 ORTHO05D003894 3.1e-75 285.4 183 77.6
Sp1g37600 Schrenkiella parvula HOM05D003148 ORTHO05D003894 3.1e-75 285.4 183 77.6
Aa31LG8G7340 Aethionema arabicum HOM05D003148 ORTHO05D003894 5.3e-75 284.6 183 76.5
AT3G20540 Arabidopsis thaliana HOM05D003148 ORTHO05D003894 5.3e-75 284.6 183 78.1
Haze_09649 Corylus avellana HOM05D003148 ORTHO05D003894 5.3e-75 284.6 183 76.5
BcaC05g27391 Brassica carinata HOM05D003148 ORTHO05D003894 9.1e-75 283.9 184 77.7
Os08g0175300 Oryza sativa ssp. japonica HOM05D003148 ORTHO05D003894 9.1e-75 283.9 183 75.4
Thhalv10019969m.g Eutrema salsugineum HOM05D003148 ORTHO05D003894 1.6e-74 283.1 183 77.0
Sp3g18540 Schrenkiella parvula HOM05D003148 ORTHO05D003894 1.6e-74 283.1 183 76.5
Carub.0001s3979 Capsella rubella HOM05D003148 ORTHO05D003894 2.0e-74 282.7 187 74.9
C05p33280 Brassica napus HOM05D003148 ORTHO05D003894 2.7e-74 282.3 184 77.7
BolC5t32054H Brassica oleracea HOM05D003148 ORTHO05D003894 2.7e-74 282.3 184 77.7
Prupe.4G209500 Prunus persica HOM05D003148 ORTHO05D003894 4.5e-74 281.6 183 76.0
A05p19930 Brassica napus HOM05D003148 ORTHO05D003894 5.9e-74 281.2 184 77.2
BraA05t20898Z Brassica rapa HOM05D003148 ORTHO05D003894 5.9e-74 281.2 184 77.2
Zm00001eb414740 Zea mays HOM05D003148 ORTHO05D003894 1.0e-73 280.4 181 75.7
A05p28320 Brassica napus HOM05D003148 ORTHO05D003894 1.7e-73 279.6 184 76.6
Mapoly0039s0093 Marchantia polymorpha HOM05D003148 ORTHO05D003894 1.5e-72 276.6 183 72.1
Cfa020383 Carpinus fangiana HOM05D003148 ORTHO05D003894 2.5e-72 275.8 185 74.6
AagrBONN_evm.TU.Sc2ySwM_228.5326 Anthoceros agrestis HOM05D003148 ORTHO05D003894 1.4e-70 270.0 183 72.1
PSO017G6339 Papaver somniferum HOM05D003148 ORTHO05D003894 2.3e-70 269.2 183 71.0
vmacro09733 Vaccinium macrocarpon HOM05D003148 ORTHO05D003894 5.2e-70 268.1 315 48.6
Pp3c24_16390 Physcomitrium patens HOM05D003148 ORTHO05D003894 2.0e-69 266.2 183 72.7
Pp3c14_14550 Physcomitrium patens HOM05D003148 ORTHO05D003894 2.6e-69 265.8 183 72.1
Nitab4.5_0013016g0020 Nicotiana tabacum HOM05D003148 ORTHO05D003894 2.7e-66 255.8 153 81.7
SMO356G0432 Selaginella moellendorffii HOM05D003148 ORTHO05D003894 3.5e-66 255.4 183 68.9
Haze_09651 Corylus avellana HOM05D003148 ORTHO05D003894 4.7e-63 245.0 183 68.9
Pp3c8_21620 Physcomitrium patens HOM05D003148 ORTHO05D003894 2.0e-61 239.6 175 66.9
Lj6A79G3 Lonicera japonica HOM05D003148 ORTHO05D003894 5.6e-56 221.5 183 60.1
MELO3C025395.2 Cucumis melo HOM05D003148 ORTHO05D003894 5.2e-54 214.9 134 77.6
Nitab4.5_0000397g0350 Nicotiana tabacum HOM05D003148 ORTHO05D003894 3.4e-53 212.2 133 79.7
Nitab4.5_0000622g0240 Nicotiana tabacum HOM05D003148 ORTHO05D003894 3.4e-53 212.2 133 78.9
Glyma.08G313300 Glycine max HOM05D003148 ORTHO05D003894 4.1e-51 205.3 121 82.6
MCO10G006 Micromonas commoda HOM05D003148 ORTHO05D003894 3.9e-49 198.7 186 57.0
TAR626G0592 Trochodendron aralioides HOM05D003148 ORTHO05D003894 5.0e-49 198.4 103 90.3
CSS0016614 Camellia sinensis var. sinensis HOM05D003148 ORTHO05D003894 3.3e-48 195.7 121 78.5
PRCOL_00004766 Prasinoderma coloniale HOM05D003148 ORTHO05D003894 3.3e-48 195.7 183 54.1
Lsat_1_v5_gn_3_87421 Lactuca sativa HOM05D003148 ORTHO05D003894 2.1e-47 193.0 188 56.9
Lj6C83G1 Lonicera japonica HOM05D003148 ORTHO05D003894 3.0e-41 172.6 183 51.9
PRCOL_00004837 Prasinoderma coloniale HOM05D003148 ORTHO05D003894 1.1e-38 164.1 183 48.6
Cre08.g363837 Chlamydomonas reinhardtii HOM05D003148 ORTHO05D003894 1.8e-38 163.3 152 57.2
Dinv40737 Davidia involucrata HOM05D003148 ORTHO05D003894 3.4e-37 159.1 83 89.2
Oeu062600.1 Olea europaea HOM05D003148 ORTHO05D003894 4.9e-36 155.2 136 61.8
TAR624G0632 Trochodendron aralioides HOM05D003148 ORTHO05D003894 1.9e-35 153.3 87 81.6
Glyma.13G112951 Glycine max HOM05D003148 ORTHO05D003894 1.2e-34 150.6 98 75.5
Glyma.14G191601 Glycine max HOM05D003148 ORTHO05D003894 1.2e-34 150.6 98 75.5
Glyma.19G036300 Glycine max HOM05D003148 ORTHO05D003894 1.2e-34 150.6 98 75.5
Lsat_1_v5_gn_3_87460 Lactuca sativa HOM05D003148 ORTHO05D003894 1.9e-32 143.3 91 73.6
SEGI_38397 Sequoiadendron giganteum HOM05D003148 ORTHO05D003894 3.6e-31 139.0 101 67.3
Atru.chr6.8 Acer truncatum HOM05D003148 ORTHO05D003894 3.1e-30 136.0 76 84.2
Glyma.08G313400 Glycine max HOM05D003148 ORTHO05D003894 3.4e-21 105.9 51 92.2
Oeu062599.1 Olea europaea HOM05D003148 ORTHO05D003894 4.4e-21 105.5 51 90.2
Cfa019820 Carpinus fangiana HOM05D003148 ORTHO05D003894 1.4e-19 100.5 51 86.3
Duzib170G0998 Durio zibethinus HOM05D003148 ORTHO05D003894 3.2e-19 99.4 51 86.3
arahy.Tifrunner.gnm1.ann1.CSHU8D Arachis hypogaea HOM05D003148 ORTHO05D003894 9.3e-19 97.8 51 80.4
CDE01G0619 Ceratophyllum demersum HOM05D003148 ORTHO05D003894 2.1e-18 96.7 183 35.5
MELO3C000081.2 Cucumis melo HOM05D003148 ORTHO05D003894 3.5e-18 95.9 51 84.3
Lju760A7T19 Lonicera japonica HOM05D003148 ORTHO05D003894 3.9e-17 92.4 56 71.4
SEGI_10889 Sequoiadendron giganteum HOM05D003148 ORTHO05D003894 1.6e-15 87.0 51 74.5
SHI31847 Sapria himalayana HOM05D003148 ORTHO05D003894 3.6e-15 85.9 51 72.5
arahy.Tifrunner.gnm1.ann1.CVK6CU Arachis hypogaea HOM05D003148 ORTHO05D002594 4.9e-12 75.5 40 80.0
Zm00001eb339560 Zea mays HOM05D046220 ORTHO05D443804 2.1e-10 70.1 43 74.4
Oeu018088.1 Olea europaea HOM05D003889 ORTHO05D004407 2.1e-07 60.1 116 31.9
Oeu031571.1 Olea europaea HOM05D003889 ORTHO05D004407 2.1e-07 60.1 116 31.9
CBR_g1000 Chara braunii HOM05D003889 ORTHO05D000353 6.2e-07 58.5 111 34.2
Ah.10g035410 Amaranthus hybridus HOM05D003889 ORTHO05D004407 1.1e-06 57.8 111 32.4
arahy.Tifrunner.gnm1.ann1.QLJ615 Arachis hypogaea HOM05D003148 ORTHO05D003894 1.8e-06 57.0 32 78.1
HanXRQChr14g0435171 Helianthus annuus HOM05D003889 ORTHO05D004407 4.0e-06 55.8 112 31.2
PSO198G0085 Papaver somniferum HOM05D003889 ORTHO05D004407 4.0e-06 55.8 111 31.5
TWI34G0995 Tripterygium wilfordii HOM05D003889 ORTHO05D004407 6.9e-06 55.1 118 33.1


User provided reference genes

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