Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00155g0006571 Lotus japonicus HOM05D006371 ORTHO05D008309 0.0e+00 1909.8 993 100.0
Glyma.14G190200 Glycine max HOM05D006371 ORTHO05D008309 0.0e+00 1577.8 1004 81.5
Glyma.02G223400 Glycine max HOM05D006371 ORTHO05D008309 0.0e+00 1558.1 992 81.2
Lalb_Chr04g0252451 Lupinus albus HOM05D006371 ORTHO05D008309 0.0e+00 1529.2 1006 79.0
arahy.Tifrunner.gnm1.ann1.BM1T67 Arachis hypogaea HOM05D006371 ORTHO05D008309 0.0e+00 1500.0 1010 76.4
arahy.Tifrunner.gnm1.ann1.YIC3VW Arachis hypogaea HOM05D006371 ORTHO05D008309 0.0e+00 1496.9 1014 75.9
Ca_05557_v3 Cicer arietinum L. HOM05D006371 ORTHO05D008309 0.0e+00 1457.2 965 76.9
Medtr5g069430 Medicago truncatula HOM05D006371 ORTHO05D008309 0.0e+00 1414.8 1022 72.6
TPR.G13852 Trifolium pratense HOM05D006371 ORTHO05D008309 0.0e+00 1395.2 1003 72.6
Psat2g060760 Pisum sativum HOM05D006371 ORTHO05D008309 0.0e+00 1390.9 994 72.5
QL04p067039 Quercus lobata HOM05D006371 ORTHO05D008309 0.0e+00 1229.5 970 65.6
Cfa014202 Carpinus fangiana HOM05D006371 ORTHO05D008309 0.0e+00 1223.0 997 64.3
CiPaw.03G283700 Carya illinoinensis HOM05D006371 ORTHO05D008309 0.0e+00 1200.7 994 64.1
MD09G1130200 Malus domestica HOM05D006371 ORTHO05D008309 0.0e+00 1156.7 1039 60.2
Phvul.008G190000 Phaseolus vulgaris HOM05D006371 ORTHO05D008309 0.0e+00 1155.2 801 75.5
Ciclev10014166m.g Citrus clementina HOM05D006371 ORTHO05D008309 0.0e+00 1153.3 971 64.1
Gorai.007G165100 Gossypium raimondii HOM05D006371 ORTHO05D008309 0.0e+00 1146.7 970 62.9
Gohir.A11G148000 Gossypium hirsutum HOM05D006371 ORTHO05D008309 0.0e+00 1138.6 971 62.8
FAN05G5438 Fragaria x ananassa HOM05D006371 ORTHO05D008309 0.0e+00 1132.5 1012 60.3
Duzib211G0069 Durio zibethinus HOM05D006371 ORTHO05D008309 0.0e+00 1130.2 982 62.0
Gohir.D11G154800 Gossypium hirsutum HOM05D006371 ORTHO05D008309 0.0e+00 1129.0 970 62.2
RcHm_v2.0_Chr2g0155641 Rosa chinensis HOM05D006371 ORTHO05D008309 0.0e+00 1127.9 1031 59.5
TWI36G0955 Tripterygium wilfordii HOM05D006371 ORTHO05D008309 0.0e+00 1124.4 999 61.2
CANSAT64G2089 Cannabis sativa HOM05D006371 ORTHO05D008309 0.0e+00 1121.3 1018 60.5
FAN14G0004 Fragaria x ananassa HOM05D006371 ORTHO05D008309 0.0e+00 1120.1 1008 60.4
FvH4_6g40410 Fragaria vesca HOM05D006371 ORTHO05D008309 0.0e+00 1119.8 1008 60.4
Duzib133G1082 Durio zibethinus HOM05D006371 ORTHO05D008309 0.0e+00 1118.2 968 62.5
FAN02G4613 Fragaria x ananassa HOM05D006371 ORTHO05D008309 0.0e+00 1117.1 1031 59.0
Eucgr.A01367 Eucalyptus grandis HOM05D006371 ORTHO05D008309 0.0e+00 1115.5 961 61.2
GSVIVG01030124001 Vitis vinifera HOM05D006371 ORTHO05D008309 0.0e+00 1110.5 992 61.1
Potri.014G170300 Populus trichocarpa HOM05D006371 ORTHO05D008309 0.0e+00 1108.6 996 61.0
MELO3C024185.2 Cucumis melo HOM05D006371 ORTHO05D008309 0.0e+00 1108.2 988 61.1
Sabra14G0129800 Salix brachista HOM05D006371 ORTHO05D008309 0.0e+00 1107.0 996 61.0
Prupe.3G194900 Prunus persica HOM05D006371 ORTHO05D008309 0.0e+00 1105.5 972 60.8
Manes.12G064500 Manihot esculenta HOM05D006371 ORTHO05D008309 0.0e+00 1099.7 951 61.4
FAN09G0519 Fragaria x ananassa HOM05D006371 ORTHO05D008309 0.0e+00 1089.7 965 61.2
Nn1g07560 Nelumbo nucifera HOM05D006371 ORTHO05D008309 0.0e+00 1082.4 999 60.6
Thecc.01G199300 Theobroma cacao HOM05D006371 ORTHO05D008309 0.0e+00 1082.4 997 60.0
CsaV3_2G010080 Cucumis sativus L. HOM05D006371 ORTHO05D008309 0.0e+00 1075.8 997 59.3
PGR031G1410 Punica granatum HOM05D006371 ORTHO05D008309 6.8e-312 1074.3 986 59.7
THA.LOC104808834 Tarenaya hassleriana HOM05D006371 ORTHO05D008309 1.0e-305 1053.5 979 58.3
CARHR102110 Cardamine hirsuta HOM05D006371 ORTHO05D008309 2.6e-301 1038.9 975 57.7
AL3G41970 Arabidopsis lyrata HOM05D006371 ORTHO05D008309 5.9e-298 1027.7 980 57.2
PSO541G0072 Papaver somniferum HOM05D006371 ORTHO05D008309 5.9e-298 1027.7 996 59.7
Sp3g23150 Schrenkiella parvula HOM05D006371 ORTHO05D008309 1.3e-297 1026.5 981 57.4
PSO675G4792 Papaver somniferum HOM05D006371 ORTHO05D008309 9.4e-296 1020.4 994 59.5
Aa31sc575G10 Aethionema arabicum HOM05D006371 ORTHO05D008309 2.1e-295 1019.2 975 57.5
BcaB06g26772 Brassica carinata HOM05D006371 ORTHO05D008309 3.6e-295 1018.5 975 57.6
Thhalv10002385m.g Eutrema salsugineum HOM05D006371 ORTHO05D008309 1.4e-294 1016.5 982 56.7
Carub.0003s2599 Capsella rubella HOM05D006371 ORTHO05D008309 5.2e-294 1014.6 981 57.2
COL.COLO4_19652 Corchorus olitorius HOM05D006371 ORTHO05D008309 5.3e-291 1004.6 895 61.6
BraA07t28469Z Brassica rapa HOM05D006371 ORTHO05D008309 1.3e-289 1000.0 984 56.6
BcaC06g35860 Brassica carinata HOM05D006371 ORTHO05D008309 1.7e-289 999.6 980 56.8
A07p06760 Brassica napus HOM05D006371 ORTHO05D008309 2.2e-289 999.2 979 56.8
TAR627G0565 Trochodendron aralioides HOM05D006371 ORTHO05D008309 8.5e-289 997.3 894 60.9
Aqoxy3G02224 Aquilegia oxysepala HOM05D006371 ORTHO05D008309 1.9e-288 996.1 1004 55.5
C07p10340 Brassica napus HOM05D006371 ORTHO05D008309 3.2e-288 995.3 981 56.8
BolC7t41483H Brassica oleracea HOM05D006371 ORTHO05D008309 1.4e-286 989.9 992 56.4
CSS0032100 Camellia sinensis var. sinensis HOM05D006371 ORTHO05D008309 4.9e-276 954.9 900 59.2
ATR0751G221 Amborella trichopoda HOM05D006371 ORTHO05D008309 1.8e-275 953.0 1058 51.9
Sed0018275 Sechium edule HOM05D006371 ORTHO05D008309 1.9e-272 943.0 796 65.1
Actinidia02362 Actinidia chinensis HOM05D006371 ORTHO05D008309 3.0e-270 935.6 972 55.2
Dinv40160 Davidia involucrata HOM05D006371 ORTHO05D008309 3.7e-268 928.7 949 56.8
Dinv08538 Davidia involucrata HOM05D006371 ORTHO05D008309 1.5e-264 916.8 849 60.3
HPP92_003032 Vanilla planifolia HOM05D006371 ORTHO05D008309 2.3e-262 909.4 991 51.1
Lj4C228G6 Lonicera japonica HOM05D006371 ORTHO05D008309 1.9e-259 899.8 1006 53.1
Migut.D00896 Erythranthe guttata HOM05D006371 ORTHO05D008309 9.2e-259 897.5 854 59.6
Os08g0323600 Oryza sativa ssp. japonica HOM05D006371 ORTHO05D008309 3.4e-253 879.0 1014 48.6
Cc07_g11500 Coffea canephora HOM05D006371 ORTHO05D008309 4.4e-253 878.6 829 60.4
MSTRG.10896 Avicennia marina HOM05D006371 ORTHO05D008309 7.8e-250 867.8 767 62.6
Ah.02g129050 Amaranthus hybridus HOM05D006371 ORTHO05D008309 3.3e-248 862.4 763 62.8
AT2G04270 Arabidopsis thaliana HOM05D006371 ORTHO05D008309 2.1e-247 859.8 726 65.3
SalBow7G3887 Salvia bowleyana HOM05D006371 ORTHO05D008309 8.9e-246 854.4 815 59.5
AUR62039632 Chenopodium quinoa HOM05D006371 ORTHO05D008309 1.2e-245 854.0 797 61.0
EL10Ac6g13348 Beta vulgaris HOM05D006371 ORTHO05D008309 6.4e-244 848.2 755 62.8
Sc07g0001260 Simmondsia chinensis HOM05D006371 ORTHO05D008309 1.9e-243 846.7 947 53.2
ECA232G0409 Erigeron canadensis HOM05D006371 ORTHO05D008309 4.0e-238 828.9 793 58.3
PGSC0003DMG400001545 Solanum tuberosum HOM05D006371 ORTHO05D008309 2.0e-237 826.6 866 55.8
CAN.G890.8 Capsicum annuum HOM05D006371 ORTHO05D008309 3.4e-237 825.9 724 62.3
HanXRQChr09g0256951 Helianthus annuus HOM05D006371 ORTHO05D008309 1.7e-236 823.5 897 53.6
Solyc02g083140.3 Solanum lycopersicum HOM05D006371 ORTHO05D008309 3.8e-236 822.4 847 56.4
Sopen02g027900 Solanum pennellii HOM05D006371 ORTHO05D008309 1.4e-235 820.5 858 55.1
Nitab4.5_0005413g0050 Nicotiana tabacum HOM05D006371 ORTHO05D008309 6.0e-234 815.1 779 59.7
Peaxi162Scf00300g00515 Petunia axillaris HOM05D006371 ORTHO05D008309 1.0e-233 814.3 852 55.4
AUR62040011 Chenopodium quinoa HOM05D006371 ORTHO05D008309 2.3e-233 813.1 744 62.0
ECA238G3451 Erigeron canadensis HOM05D006371 ORTHO05D008309 3.9e-233 812.4 902 52.9
Lsat_1_v5_gn_4_142580 Lactuca sativa HOM05D006371 ORTHO05D008309 3.1e-230 802.7 783 57.9
ClCG02G003000 Citrullus lanatus HOM05D006371 ORTHO05D008309 2.4e-227 793.1 826 55.8
MBI15_g38530_MAGBIO Magnolia biondii HOM05D006371 ORTHO05D008309 1.0e-225 787.7 781 55.8
Cpa.g.sc136.51 Carica papaya HOM05D006371 ORTHO05D008309 5.8e-221 771.9 580 70.0
Zm00001eb038720 Zea mays HOM05D006371 ORTHO05D008309 4.3e-216 755.7 694 59.2
Oeu049652.2 Olea europaea HOM05D006371 ORTHO05D008309 3.7e-215 752.7 1028 46.7
Hund03659 Selenicereus undatus HOM05D006371 ORTHO05D008309 3.4e-213 746.1 780 55.6
SGA_v2.0_scaffold68G22808 Striga asiatica HOM05D006371 ORTHO05D008309 1.8e-209 733.8 926 49.7
Atru.chr6.3429 Acer truncatum HOM05D006371 ORTHO05D008309 1.3e-204 717.6 696 57.2
Haze_12588 Corylus avellana HOM05D006371 ORTHO05D008309 8.5e-204 714.9 675 57.5
unitig_748.g7080 Utricularia gibba HOM05D006371 ORTHO05D005825 8.5e-196 688.3 695 57.8
CDE02G2282 Ceratophyllum demersum HOM05D006371 ORTHO05D008309 6.3e-191 672.2 806 48.5
Hund03661 Selenicereus undatus HOM05D006371 ORTHO05D008309 1.7e-188 664.1 787 52.6
Mapoly0111s0056 Marchantia polymorpha HOM05D006371 ORTHO05D008309 3.2e-171 606.7 902 41.9
Hma1.2p1_0315F.1_g122770 Hydrangea macrophylla HOM05D006371 ORTHO05D008309 6.8e-169 599.0 730 50.1
vmacro20507 Vaccinium macrocarpon HOM05D006371 ORTHO05D008309 1.2e-168 598.2 1051 40.2
DCAR_023137 Daucus carota HOM05D006371 ORTHO05D008309 8.8e-161 572.0 637 53.8
Nitab4.5_0023804g0010 Nicotiana tabacum HOM05D006371 ORTHO05D008309 1.0e-156 558.5 570 57.4
AagrBONN_evm.TU.Sc2ySwM_368.983 Anthoceros agrestis HOM05D006371 ORTHO05D008309 5.0e-156 556.2 913 37.9
Pp3c4_14910 Physcomitrium patens HOM05D006371 ORTHO05D008309 1.6e-149 534.6 716 44.3
Rhsim10G0203500 Rhododendron simsii HOM05D006371 ORTHO05D008309 2.6e-144 517.3 1089 36.7
SMO117G0275 Selaginella moellendorffii HOM05D006371 ORTHO05D008309 7.6e-128 462.6 562 47.3
Haze_12589 Corylus avellana HOM05D006371 ORTHO05D008309 1.6e-98 365.2 418 51.7
SEGI_21719 Sequoiadendron giganteum HOM05D006371 ORTHO05D008309 4.8e-66 257.3 208 63.5
AUR62026198 Chenopodium quinoa HOM05D006371 ORTHO05D008309 7.2e-62 243.4 199 64.8
Ca_28887_v3 Cicer arietinum L. HOM05D006371 ORTHO05D008309 1.7e-50 205.7 346 34.7
MD17G1105600 Malus domestica HOM05D006371 ORTHO05D008309 1.6e-48 199.1 197 59.9
MCO12G287 Micromonas commoda HOM05D006371 ORTHO05D008309 5.6e-38 164.1 327 32.4
SEGI_30134 Sequoiadendron giganteum HOM05D006371 ORTHO05D008309 9.2e-25 120.2 546 26.2
CBR_g28919 Chara braunii HOM05D006371 ORTHO05D000048 1.0e-23 116.7 123 51.2
SEGI_19700 Sequoiadendron giganteum HOM05D006371 ORTHO05D008309 1.2e-19 103.2 74 68.9
MD17G1105400 Malus domestica HOM05D006371 ORTHO05D008309 3.2e-17 95.1 87 59.8
CBR_g28910 Chara braunii HOM05D000019 ORTHO05D000048 8.6e-15 87.0 79 54.4
FAN09G2267 Fragaria x ananassa HOM05D006371 ORTHO05D008309 1.1e-14 86.7 73 50.7
AUR62026199 Chenopodium quinoa HOM05D000691 ORTHO05D000378 1.8e-12 79.3 71 57.7
CBR_g28922 Chara braunii HOM05D000019 ORTHO05D000048 2.0e-11 75.9 279 31.9
CSS0035540 Camellia sinensis var. sinensis HOM05D006371 ORTHO05D008309 6.4e-10 70.9 81 43.2
MD17G1105500 Malus domestica HOM05D006371 ORTHO05D008309 8.4e-10 70.5 41 87.8
AUR62026201 Chenopodium quinoa HOM05D006371 ORTHO05D008309 2.1e-08 65.9 37 89.2
Hund04870 Selenicereus undatus HOM05D003809 ORTHO05D003935 1.0e-07 63.5 142 30.3
Psat7g246040 Pisum sativum HOM05D003809 ORTHO05D003935 8.7e-07 60.5 239 25.5


User provided reference genes

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