Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9C506T12 Lonicera japonica HOM05D007289 ORTHO05D009215 5.1e-224 780.8 400 100.0
Dinv30529 Davidia involucrata HOM05D007289 ORTHO05D009215 2.2e-126 456.4 420 62.6
CSS0039074 Camellia sinensis var. sinensis HOM05D007289 ORTHO05D009215 4.0e-120 435.6 413 58.8
TAR383G0594 Trochodendron aralioides HOM05D007289 ORTHO05D009215 5.4e-117 425.2 417 58.3
Prupe.3G073900 Prunus persica HOM05D007289 ORTHO05D009215 6.0e-116 421.8 406 59.6
MD17G1197800 Malus domestica HOM05D007289 ORTHO05D009215 2.3e-112 409.8 409 58.2
vmacro18934 Vaccinium macrocarpon HOM05D007289 ORTHO05D009215 3.1e-112 409.5 416 57.7
FvH4_6g30910 Fragaria vesca HOM05D007289 ORTHO05D009215 1.9e-109 400.2 399 58.9
Ciclev10025766m.g Citrus clementina HOM05D007289 ORTHO05D009215 7.1e-109 398.3 399 56.6
FAN02G0535 Fragaria x ananassa HOM05D007289 ORTHO05D009215 1.6e-108 397.1 399 58.6
Manes.04G121300 Manihot esculenta HOM05D007289 ORTHO05D009215 2.7e-108 396.4 403 54.6
Rhsim08G0218600 Rhododendron simsii HOM05D007289 ORTHO05D009215 4.6e-108 395.6 421 55.6
RcHm_v2.0_Chr2g0137421 Rosa chinensis HOM05D007289 ORTHO05D009215 4.6e-108 395.6 406 56.7
QL05p025382 Quercus lobata HOM05D007289 ORTHO05D009215 5.1e-107 392.1 400 56.2
Potri.001G178100 Populus trichocarpa HOM05D007289 ORTHO05D009215 6.6e-107 391.7 384 55.2
Lalb_Chr14g0373531 Lupinus albus HOM05D007289 ORTHO05D009215 1.5e-106 390.6 390 54.4
DCAR_016227 Daucus carota HOM05D007289 ORTHO05D009215 2.1e-105 386.7 404 54.7
Ca_01106_v3 Cicer arietinum L. HOM05D007289 ORTHO05D009215 6.2e-105 385.2 393 55.0
Sabra01G0148500 Salix brachista HOM05D007289 ORTHO05D009215 1.4e-104 384.0 399 53.6
Atru.chr1.3224 Acer truncatum HOM05D007289 ORTHO05D009215 1.8e-104 383.6 406 55.2
CANSAT56G1700 Cannabis sativa HOM05D007289 ORTHO05D009215 1.8e-104 383.6 402 54.7
Cfa002049 Carpinus fangiana HOM05D007289 ORTHO05D009215 1.8e-104 383.6 388 55.2
PGSC0003DMG400016511 Solanum tuberosum HOM05D007289 ORTHO05D009215 1.8e-104 383.6 403 54.3
TWI75G1369 Tripterygium wilfordii HOM05D007289 ORTHO05D009215 1.2e-103 380.9 387 55.3
Solyc06g066780.3 Solanum lycopersicum HOM05D007289 ORTHO05D009215 2.0e-103 380.2 405 53.3
Sopen06g025060 Solanum pennellii HOM05D007289 ORTHO05D009215 1.3e-102 377.5 405 53.1
Phvul.005G172600 Phaseolus vulgaris HOM05D007289 ORTHO05D009215 2.2e-102 376.7 397 51.1
MBI04_g26647_MAGBIO Magnolia biondii HOM05D007289 ORTHO05D009215 2.9e-102 376.3 395 53.4
GSVIVG01017153001 Vitis vinifera HOM05D007289 ORTHO05D009215 2.9e-102 376.3 356 58.4
CiPaw.02G152300 Carya illinoinensis HOM05D007289 ORTHO05D009215 8.4e-102 374.8 380 53.2
Lalb_Chr22g0351171 Lupinus albus HOM05D007289 ORTHO05D009215 1.9e-101 373.6 397 52.4
MELO3C023367.2 Cucumis melo HOM05D007289 ORTHO05D009215 3.2e-101 372.9 396 52.5
Cc04_g03590 Coffea canephora HOM05D007289 ORTHO05D009215 1.2e-100 370.9 401 53.1
CsaV3_7G033000 Cucumis sativus L. HOM05D007289 ORTHO05D009215 1.2e-100 370.9 396 52.3
Nitab4.5_0002327g0060 Nicotiana tabacum HOM05D007289 ORTHO05D009215 2.1e-100 370.2 402 52.5
VMungo1080G1522 Vigna mungo HOM05D007289 ORTHO05D009215 2.1e-100 370.2 400 50.2
Sed0021795 Sechium edule HOM05D007289 ORTHO05D009215 6.0e-100 368.6 405 51.4
Lj3g0010801 Lotus japonicus HOM05D007289 ORTHO05D009215 7.8e-100 368.2 406 51.7
Peaxi162Scf00207g00834 Petunia axillaris HOM05D007289 ORTHO05D009215 3.9e-99 365.9 323 58.8
TPR.G37243 Trifolium pratense HOM05D007289 ORTHO05D009215 5.1e-99 365.5 391 51.7
Gohir.A02G122500 Gossypium hirsutum HOM05D007289 ORTHO05D009215 6.6e-99 365.2 402 54.5
Oeu033497.1 Olea europaea HOM05D007289 ORTHO05D009215 6.6e-99 365.2 375 53.3
MSTRG.11091 Avicennia marina HOM05D007289 ORTHO05D009215 8.6e-99 364.8 395 51.6
Gorai.002G058300 Gossypium raimondii HOM05D007289 ORTHO05D009215 1.5e-98 364.0 402 54.0
Lsat_1_v5_gn_4_103480 Lactuca sativa HOM05D007289 ORTHO05D009215 3.3e-98 362.8 406 50.5
Psat5g299280 Pisum sativum HOM05D007289 ORTHO05D009215 3.3e-98 362.8 391 52.4
Glyma.13G360800 Glycine max HOM05D007289 ORTHO05D009215 7.3e-98 361.7 400 50.8
Aqoxy7G01850 Aquilegia oxysepala HOM05D007289 ORTHO05D009215 1.6e-97 360.5 396 51.5
CAN.G395.19 Capsicum annuum HOM05D007289 ORTHO05D009215 4.7e-97 359.0 397 50.4
Migut.I00845 Erythranthe guttata HOM05D007289 ORTHO05D009215 4.7e-97 359.0 388 52.1
Thecc.06G082700 Theobroma cacao HOM05D007289 ORTHO05D009215 4.0e-96 355.9 405 52.8
PGR102G0666 Punica granatum HOM05D007289 ORTHO05D009215 5.2e-96 355.5 385 53.0
Sc12g0009160 Simmondsia chinensis HOM05D007289 ORTHO05D009215 6.8e-96 355.1 419 49.9
ECA232G0523 Erigeron canadensis HOM05D007289 ORTHO05D009215 1.5e-95 354.0 393 51.7
Medtr2g102430 Medicago truncatula HOM05D007289 ORTHO05D009215 7.6e-95 351.7 390 51.0
FAN09G0173 Fragaria x ananassa HOM05D007289 ORTHO05D009215 9.9e-95 351.3 376 54.8
arahy.Tifrunner.gnm1.ann1.UJ7D22 Arachis hypogaea HOM05D007289 ORTHO05D009215 1.3e-94 350.9 390 51.8
COL.COLO4_30328 Corchorus olitorius HOM05D007289 ORTHO05D009215 3.8e-94 349.4 401 50.6
Hund06601 Selenicereus undatus HOM05D007289 ORTHO05D009215 1.1e-93 347.8 417 48.9
arahy.Tifrunner.gnm1.ann1.HRS6MU Arachis hypogaea HOM05D007289 ORTHO05D009215 3.2e-93 346.3 388 50.5
AUR62016430 Chenopodium quinoa HOM05D007289 ORTHO05D009215 7.1e-93 345.1 412 49.5
Actinidia15825 Actinidia chinensis HOM05D002927 ORTHO05D003841 2.1e-92 343.6 350 57.1
Aa31LG4G690 Aethionema arabicum HOM05D007289 ORTHO05D009215 1.0e-91 341.3 398 50.5
HanXRQChr16g0501051 Helianthus annuus HOM05D007289 ORTHO05D009215 3.9e-91 339.3 397 50.4
THA.LOC104808206 Tarenaya hassleriana HOM05D007289 ORTHO05D009215 6.6e-91 338.6 388 52.8
PSO782G0119 Papaver somniferum HOM05D007289 ORTHO05D009215 1.5e-90 337.4 393 48.3
AUR62011614 Chenopodium quinoa HOM05D007289 ORTHO05D009215 7.3e-90 335.1 412 48.5
Sp5g35390 Schrenkiella parvula HOM05D007289 ORTHO05D009215 3.6e-89 332.8 384 50.5
CARHR074820 Cardamine hirsuta HOM05D007289 ORTHO05D009215 4.8e-89 332.4 387 49.9
AL2G41080 Arabidopsis lyrata HOM05D007289 ORTHO05D009215 2.4e-88 330.1 385 50.4
C02p37330 Brassica napus HOM05D007289 ORTHO05D009215 5.3e-88 328.9 384 49.0
Thhalv10018735m.g Eutrema salsugineum HOM05D007289 ORTHO05D009215 5.3e-88 328.9 393 48.9
BolC2t09743H Brassica oleracea HOM05D007289 ORTHO05D009215 1.2e-87 327.8 384 48.7
BcaC03g15968 Brassica carinata HOM05D007289 ORTHO05D009215 1.5e-87 327.4 384 49.0
AT1G80420 Arabidopsis thaliana HOM05D007289 ORTHO05D009215 1.7e-86 323.9 386 49.7
A02p23560 Brassica napus HOM05D007289 ORTHO05D009215 3.2e-85 319.7 384 48.4
BraA02t07349Z Brassica rapa HOM05D007289 ORTHO05D009215 3.2e-85 319.7 384 48.4
EL10Ac9g21988 Beta vulgaris HOM05D007289 ORTHO05D009215 9.3e-85 318.2 461 45.1
Carub.0002s2715 Capsella rubella HOM05D007289 ORTHO05D009215 1.0e-83 314.7 391 47.8
Nn8g39279 Nelumbo nucifera HOM05D007289 ORTHO05D009215 1.1e-82 311.2 402 48.0
BcaB05g25270 Brassica carinata HOM05D002927 ORTHO05D003841 8.1e-81 305.1 388 47.4
Os06g0144000 Oryza sativa ssp. japonica HOM05D007289 ORTHO05D009215 2.4e-80 303.5 392 45.2
Haze_16457 Corylus avellana HOM05D007289 ORTHO05D009215 4.9e-78 295.8 545 37.4
Duzib235G0864 Durio zibethinus HOM05D007289 ORTHO05D009215 1.4e-77 294.3 403 47.4
CDE02G4373 Ceratophyllum demersum HOM05D004733 ORTHO05D005925 2.1e-76 290.4 406 43.8
ATR0037G063 Amborella trichopoda HOM05D007289 ORTHO05D009215 2.7e-76 290.0 430 43.3
SalBow2G1977 Salvia bowleyana HOM05D007289 ORTHO05D009215 6.9e-72 275.4 395 42.8
PSO339G0085 Papaver somniferum HOM05D007289 ORTHO05D009215 2.2e-70 270.4 292 48.3
Cpa.g.sc10.164 Carica papaya HOM05D007289 ORTHO05D009215 4.6e-68 262.7 308 51.3
Glyma.15G013100 Glycine max HOM05D007289 ORTHO05D009215 2.0e-63 247.3 261 52.5
SEGI_14605 Sequoiadendron giganteum HOM05D007289 ORTHO05D009215 2.5e-61 240.4 350 42.0
HPP92_000676 Vanilla planifolia HOM05D007289 ORTHO05D009215 6.7e-59 232.3 288 45.5
Gohir.D03G073900 Gossypium hirsutum HOM05D007289 ORTHO05D009215 1.4e-53 214.5 225 58.7
ClCG09G002310 Citrullus lanatus HOM05D007289 ORTHO05D009215 1.2e-52 211.5 178 60.7
FAN05G4871 Fragaria x ananassa HOM05D007289 ORTHO05D009215 3.0e-51 206.8 120 82.5
Pp3c15_20480 Physcomitrium patens HOM05D007289 ORTHO05D009215 3.0e-51 206.8 333 36.9
FAN05G4017 Fragaria x ananassa HOM05D007289 ORTHO05D009215 3.9e-51 206.5 198 58.6
Eucgr.F03006 Eucalyptus grandis HOM05D007289 ORTHO05D009215 7.4e-50 202.2 245 46.9
Nitab4.5_0021849g0010 Nicotiana tabacum HOM05D007289 ORTHO05D009215 5.3e-48 196.1 203 52.2
Lj2P1136T43 Lonicera japonica HOM05D007289 ORTHO05D009215 3.4e-47 193.4 130 79.2
TWI12G0812 Tripterygium wilfordii HOM05D007289 ORTHO05D009215 3.2e-45 186.8 201 52.7
Mapoly0044s0047 Marchantia polymorpha HOM05D007289 ORTHO05D009215 2.1e-44 184.1 376 34.0
unitig_21.g20513 Utricularia gibba HOM05D007289 ORTHO05D009215 6.7e-43 179.1 394 33.8
Zm00001eb377280 Zea mays HOM05D007289 ORTHO05D009215 5.0e-38 162.9 193 47.2
SEGI_13111 Sequoiadendron giganteum HOM05D007289 ORTHO05D009215 2.7e-36 157.1 170 49.4
ClCG09G002320 Citrullus lanatus HOM05D007289 ORTHO05D009215 7.7e-31 139.0 251 39.0
CBR_g23739 Chara braunii HOM05D007289 ORTHO05D009215 1.7e-30 137.9 100 58.0
Hma1.2p1_0845F.1_g227540 Hydrangea macrophylla HOM05D007289 ORTHO05D009215 1.6e-28 131.3 132 56.8
Ah.01g011120 Amaranthus hybridus HOM05D007289 ORTHO05D009215 3.5e-23 113.6 146 46.6
Pp3c21_18730 Physcomitrium patens HOM05D007289 ORTHO05D009215 3.4e-10 70.5 106 30.2


User provided reference genes

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