Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0009484 Lotus japonicus HOM05D005639 ORTHO05D007234 3.3e-257 891.3 501 100.0
VMungo0540G0794 Vigna mungo HOM05D005639 ORTHO05D007234 9.5e-204 713.8 507 80.7
Phvul.006G129100 Phaseolus vulgaris HOM05D005639 ORTHO05D007234 1.4e-199 699.9 508 79.9
Psat1g168120 Pisum sativum HOM05D005639 ORTHO05D007234 5.8e-193 677.9 505 77.6
Glyma.09G023100 Glycine max HOM05D005639 ORTHO05D007234 7.5e-193 677.6 506 78.5
Lalb_Chr18g0057911 Lupinus albus HOM05D005639 ORTHO05D007234 1.7e-192 676.4 513 75.2
arahy.Tifrunner.gnm1.ann1.JS3IU7 Arachis hypogaea HOM05D005639 ORTHO05D007234 1.7e-181 639.8 510 72.9
Medtr2g029940 Medicago truncatula HOM05D005639 ORTHO05D007234 8.1e-179 630.9 505 74.1
arahy.Tifrunner.gnm1.ann1.MSHM5J Arachis hypogaea HOM05D005639 ORTHO05D007234 1.1e-175 620.5 551 67.7
Ca_00807_v3 Cicer arietinum L. HOM05D005639 ORTHO05D007234 1.7e-173 613.2 397 82.6
Prupe.4G089600 Prunus persica HOM05D005639 ORTHO05D007234 6.0e-166 588.2 501 68.7
Ciclev10014949m.g Citrus clementina HOM05D005639 ORTHO05D007234 1.3e-163 580.5 514 66.5
ClCG08G001610 Citrullus lanatus HOM05D005639 ORTHO05D007234 1.4e-162 577.0 506 67.8
Atru.chr10.888 Acer truncatum HOM05D005639 ORTHO05D007234 4.0e-162 575.5 500 66.4
GSVIVG01021618001 Vitis vinifera HOM05D005639 ORTHO05D007234 1.2e-161 573.9 502 65.9
CsaV3_5G039540 Cucumis sativus L. HOM05D005639 ORTHO05D007234 4.5e-161 572.0 503 66.4
Cfa016817 Carpinus fangiana HOM05D005639 ORTHO05D007234 2.9e-160 569.3 501 65.9
MD10G1254000 Malus domestica HOM05D005639 ORTHO05D007234 2.9e-160 569.3 502 65.7
Cpa.g.sc19.212 Carica papaya HOM05D005639 ORTHO05D007234 1.6e-158 563.5 508 64.8
TWI73G0023 Tripterygium wilfordii HOM05D005639 ORTHO05D007234 4.6e-158 562.0 503 65.6
Sed0027243 Sechium edule HOM05D005639 ORTHO05D007234 3.0e-157 559.3 511 66.9
Sed0017304 Sechium edule HOM05D005639 ORTHO05D007234 6.7e-157 558.1 500 64.4
Haze_19855 Corylus avellana HOM05D005639 ORTHO05D007234 4.3e-156 555.4 522 63.2
CiPaw.04G138400 Carya illinoinensis HOM05D005639 ORTHO05D007234 9.6e-156 554.3 506 63.4
Dinv03058 Davidia involucrata HOM05D005639 ORTHO05D007234 4.8e-155 552.0 500 65.4
Rhsim13G0120200 Rhododendron simsii HOM05D005639 ORTHO05D007234 1.4e-154 550.4 491 65.6
TWI09G1293 Tripterygium wilfordii HOM05D005639 ORTHO05D007234 1.4e-154 550.4 520 63.5
CSS0044875 Camellia sinensis var. sinensis HOM05D005639 ORTHO05D007234 1.8e-154 550.1 496 67.1
Dinv01990 Davidia involucrata HOM05D005639 ORTHO05D007234 6.9e-154 548.1 487 67.6
FvH4_3g09990 Fragaria vesca HOM05D005639 ORTHO05D007234 1.2e-153 547.4 502 65.1
Nn5g27628 Nelumbo nucifera HOM05D005639 ORTHO05D007234 1.2e-153 547.4 498 64.7
MD05G1274300 Malus domestica HOM05D005639 ORTHO05D007234 3.4e-153 545.8 500 64.4
QL03p009300 Quercus lobata HOM05D005639 ORTHO05D007234 2.2e-152 543.1 595 53.4
Eucgr.D00190 Eucalyptus grandis HOM05D005639 ORTHO05D007234 1.4e-151 540.4 460 67.0
PGR083G2688 Punica granatum HOM05D005639 ORTHO05D007234 3.2e-151 539.3 475 66.1
FAN25G3670 Fragaria x ananassa HOM05D005639 ORTHO05D007234 1.2e-150 537.3 500 64.8
THA.LOC104812393 Tarenaya hassleriana HOM05D005639 ORTHO05D007234 1.6e-150 537.0 509 62.1
DCAR_003859 Daucus carota HOM05D005639 ORTHO05D007234 3.5e-150 535.8 508 62.6
FAN21G2832 Fragaria x ananassa HOM05D005639 ORTHO05D007234 6.0e-150 535.0 500 65.4
vmacro03396 Vaccinium macrocarpon HOM05D005639 ORTHO05D007234 1.3e-149 533.9 503 64.2
COL.COLO4_26825 Corchorus olitorius HOM05D005639 ORTHO05D007234 3.9e-149 532.3 502 62.2
Hma1.2p1_0333F.1_g128320 Hydrangea macrophylla HOM05D005639 ORTHO05D007234 6.7e-149 531.6 429 68.8
Thecc.06G000900 Theobroma cacao HOM05D005639 ORTHO05D007234 1.1e-148 530.8 503 61.8
Actinidia36001 Actinidia chinensis HOM05D005639 ORTHO05D007234 1.3e-147 527.3 444 70.7
MELO3C022131.2 Cucumis melo HOM05D005639 ORTHO05D007234 6.3e-147 525.0 481 63.8
FAN16G1271 Fragaria x ananassa HOM05D005639 ORTHO05D007234 1.8e-146 523.5 512 59.2
RcHm_v2.0_Chr5g0015871 Rosa chinensis HOM05D005639 ORTHO05D007234 2.4e-146 523.1 443 69.5
THA.LOC104806253 Tarenaya hassleriana HOM05D005639 ORTHO05D007234 1.5e-145 520.4 443 65.9
Gorai.005G118400 Gossypium raimondii HOM05D005639 ORTHO05D007234 1.0e-144 517.7 519 58.8
Gohir.A02G094000 Gossypium hirsutum HOM05D005639 ORTHO05D007234 5.0e-144 515.4 518 58.7
MSTRG.13266 Avicennia marina HOM05D005639 ORTHO05D007234 1.4e-143 513.8 507 62.7
Gohir.D02G104300 Gossypium hirsutum HOM05D005639 ORTHO05D007234 2.5e-143 513.1 519 58.4
Manes.13G081200 Manihot esculenta HOM05D005639 ORTHO05D007234 4.2e-143 512.3 515 63.1
Peaxi162Scf00670g00332 Petunia axillaris HOM05D005639 ORTHO05D007234 4.2e-143 512.3 432 70.4
Nitab4.5_0004077g0020 Nicotiana tabacum HOM05D005639 ORTHO05D007234 9.4e-143 511.1 433 68.4
Cc09_g08220 Coffea canephora HOM05D005639 ORTHO05D007234 1.6e-142 510.4 400 70.8
Potri.007G107900 Populus trichocarpa HOM05D005639 ORTHO05D007234 3.6e-142 509.2 446 64.6
Lsat_1_v5_gn_4_3900 Lactuca sativa HOM05D005639 ORTHO05D007234 2.3e-141 506.5 506 60.1
Nitab4.5_0002719g0080 Nicotiana tabacum HOM05D005639 ORTHO05D007234 3.0e-141 506.1 432 68.5
FAN11G3706 Fragaria x ananassa HOM05D005639 ORTHO05D007234 1.5e-140 503.8 499 59.3
Sc24g0001380 Simmondsia chinensis HOM05D005639 ORTHO05D007234 2.0e-140 503.4 522 60.5
Potri.005G061000 Populus trichocarpa HOM05D005639 ORTHO05D007234 5.7e-140 501.9 441 64.4
Hund22392 Selenicereus undatus HOM05D005639 ORTHO05D007234 2.4e-138 496.5 525 57.5
PGSC0003DMG402021193 Solanum tuberosum HOM05D005639 ORTHO05D007234 2.4e-138 496.5 501 59.5
ECA234G3170 Erigeron canadensis HOM05D005639 ORTHO05D007234 6.9e-138 495.0 445 64.7
HanXRQChr17g0569471 Helianthus annuus HOM05D005639 ORTHO05D007234 9.1e-138 494.6 504 58.9
Migut.H01334 Erythranthe guttata HOM05D005639 ORTHO05D007234 1.5e-137 493.8 404 67.8
Solyc02g069770.3 Solanum lycopersicum HOM05D005639 ORTHO05D007234 1.5e-137 493.8 501 61.5
TAR626G0701 Trochodendron aralioides HOM05D005639 ORTHO05D007234 1.5e-137 493.8 382 72.5
Sopen02g018930 Solanum pennellii HOM05D005639 ORTHO05D007234 2.0e-137 493.4 501 61.3
Sabra05G0051400 Salix brachista HOM05D005639 ORTHO05D007234 5.9e-137 491.9 505 56.8
Sabra07G0088400 Salix brachista HOM05D005639 ORTHO05D007234 1.1e-135 487.6 441 64.6
Aqoxy1G01607 Aquilegia oxysepala HOM05D005639 ORTHO05D007234 2.5e-135 486.5 398 67.6
SGA_v2.0_scaffold106G30666 Striga asiatica HOM05D005639 ORTHO05D007234 5.5e-135 485.3 435 67.1
ATR0165G031 Amborella trichopoda HOM05D005639 ORTHO05D007234 1.2e-134 484.2 504 61.3
SalBow7G3138 Salvia bowleyana HOM05D005639 ORTHO05D007234 2.1e-134 483.4 487 62.8
Aa31LG9G9170 Aethionema arabicum HOM05D005639 ORTHO05D007234 2.7e-134 483.0 457 65.6
HPP92_013994 Vanilla planifolia HOM05D005639 ORTHO05D007234 2.6e-132 476.5 501 58.5
AT4G21130 Arabidopsis thaliana HOM05D005639 ORTHO05D007234 3.3e-132 476.1 503 52.9
Ah.14g085710 Amaranthus hybridus HOM05D005639 ORTHO05D007234 7.4e-132 474.9 499 58.7
CARHR252170 Cardamine hirsuta HOM05D005639 ORTHO05D007234 7.4e-132 474.9 522 58.8
Thhalv10028589m.g Eutrema salsugineum HOM05D005639 ORTHO05D007234 2.2e-131 473.4 480 60.6
PSO675G8746 Papaver somniferum HOM05D005639 ORTHO05D007234 3.7e-131 472.6 499 59.1
CiPaw.02G032400 Carya illinoinensis HOM05D005639 ORTHO05D007234 6.3e-131 471.9 506 53.6
PSO541G1457 Papaver somniferum HOM05D005639 ORTHO05D007234 1.2e-129 467.6 499 59.3
Sp6g03680 Schrenkiella parvula HOM05D005639 ORTHO05D007234 5.9e-129 465.3 504 56.7
C09p32350 Brassica napus HOM05D005639 ORTHO05D007234 1.1e-127 461.1 504 56.9
Carub.0006s3332 Capsella rubella HOM05D005639 ORTHO05D007234 1.1e-127 461.1 481 55.7
AL6G49000 Arabidopsis lyrata HOM05D005639 ORTHO05D007234 4.2e-127 459.1 479 59.7
BraA09t38117Z Brassica rapa HOM05D005639 ORTHO05D007234 8.0e-126 454.9 504 56.5
BolC9t56080H Brassica oleracea HOM05D005639 ORTHO05D007234 1.4e-125 454.1 504 55.6
unitig_8.g4887 Utricularia gibba HOM05D005639 ORTHO05D007234 1.4e-125 454.1 495 58.6
A09p25350 Brassica napus HOM05D005639 ORTHO05D007234 6.7e-125 451.8 502 56.4
BcaB01g02559 Brassica carinata HOM05D005639 ORTHO05D007234 3.3e-124 449.5 503 58.6
AT4G05410 Arabidopsis thaliana HOM05D005639 ORTHO05D007234 4.4e-124 449.1 478 61.1
A03p30310 Brassica napus HOM05D005639 ORTHO05D007234 3.7e-123 446.0 504 58.7
C03p36580 Brassica napus HOM05D005639 ORTHO05D007234 1.6e-121 440.7 504 58.3
AL7G32990 Arabidopsis lyrata HOM05D005639 ORTHO05D007234 4.5e-121 439.1 519 50.9
BolC3t15973H Brassica oleracea HOM05D005639 ORTHO05D007234 3.8e-120 436.0 505 57.4
AUR62033065 Chenopodium quinoa HOM05D005639 ORTHO05D007234 8.5e-120 434.9 412 59.7
CiPaw.10G033400 Carya illinoinensis HOM05D005639 ORTHO05D007234 2.5e-119 433.3 526 50.0
BraA03t12214Z Brassica rapa HOM05D005639 ORTHO05D007234 3.2e-119 433.0 502 57.8
BcaC01g06663 Brassica carinata HOM05D005639 ORTHO05D007234 5.5e-119 432.2 505 57.0
CDE05G0927 Ceratophyllum demersum HOM05D005639 ORTHO05D007234 6.1e-118 428.7 484 55.0
EL10Ac4g08968 Beta vulgaris HOM05D005639 ORTHO05D007234 2.6e-116 423.3 483 59.4
Glyma.15G129100 Glycine max HOM05D005639 ORTHO05D007234 2.4e-114 416.8 267 76.4
Zm00001eb218720 Zea mays HOM05D005639 ORTHO05D007234 1.2e-113 414.5 479 55.1
Oeu030450.1 Olea europaea HOM05D005639 ORTHO05D007234 7.7e-113 411.8 497 50.3
Zm00001eb050650 Zea mays HOM05D005639 ORTHO05D007234 2.5e-111 406.8 439 57.4
Os03g0625900 Oryza sativa ssp. japonica HOM05D005639 ORTHO05D007234 8.0e-110 401.7 395 58.7
AUR62042204 Chenopodium quinoa HOM05D005639 ORTHO05D007234 9.8e-108 394.8 413 56.4
Mapoly0012s0170 Marchantia polymorpha HOM05D005639 ORTHO05D007234 1.1e-103 381.3 512 50.8
AagrBONN_evm.TU.Sc2ySwM_228.3905 Anthoceros agrestis HOM05D005639 ORTHO05D007234 1.2e-102 377.9 423 56.3
vmacro03440 Vaccinium macrocarpon HOM05D005639 ORTHO05D007234 4.9e-99 365.9 489 47.6
Pp3c15_1000 Physcomitrium patens HOM05D005639 ORTHO05D007234 2.6e-92 343.6 522 46.7
Pp3c13_22280 Physcomitrium patens HOM05D005639 ORTHO05D007234 4.4e-92 342.8 518 47.3
HanXRQChr13g0407861 Helianthus annuus HOM05D005639 ORTHO05D007234 3.0e-88 330.1 355 59.4
CBR_g50978 Chara braunii HOM05D005639 ORTHO05D007234 9.5e-79 298.5 541 44.0
SMO146G0033 Selaginella moellendorffii HOM05D005639 ORTHO05D007234 1.9e-74 284.3 439 44.0
Actinidia13477 Actinidia chinensis HOM05D005639 ORTHO05D007234 1.5e-63 248.1 273 56.8
Actinidia13478 Actinidia chinensis HOM05D005639 ORTHO05D007234 1.9e-63 247.7 187 65.8
MCO15G200 Micromonas commoda HOM05D005639 ORTHO05D007234 1.1e-61 241.9 472 35.8
PRCOL_00004480 Prasinoderma coloniale HOM05D005639 ORTHO05D007234 3.5e-57 226.9 472 37.5
C06p38580 Brassica napus HOM05D005639 ORTHO05D007234 2.9e-51 207.2 279 41.9
Cre06.g278175 Chlamydomonas reinhardtii HOM05D005639 ORTHO05D007234 3.7e-46 190.3 402 32.8
Duzib235G0447 Durio zibethinus HOM05D005639 ORTHO05D007234 2.0e-44 184.5 221 45.2
BolC6t38950H Brassica oleracea HOM05D005639 ORTHO05D007234 2.9e-43 180.6 252 41.3
Cfa027057 Carpinus fangiana HOM05D005639 ORTHO05D007234 1.1e-23 115.5 595 23.4
BcaB01g02186 Brassica carinata HOM05D005639 ORTHO05D007234 1.5e-23 115.2 131 47.3
BcaC04g22046 Brassica carinata HOM05D001874 ORTHO05D002166 3.8e-19 100.5 82 58.5
BcaB07g31331 Brassica carinata HOM05D005639 ORTHO05D007234 2.5e-18 97.8 82 57.3
A08p03340 Brassica napus HOM05D005639 ORTHO05D001462 7.2e-18 96.3 121 44.6
C08p21980 Brassica napus HOM05D005639 ORTHO05D002166 7.9e-17 92.8 164 37.8
A01p33050 Brassica napus HOM05D001874 ORTHO05D002166 1.3e-14 85.5 165 35.2
BcaB03g11915 Brassica carinata HOM05D005639 ORTHO05D007234 2.6e-12 77.8 131 36.6
Nitab4.5_0002059g0020 Nicotiana tabacum HOM05D000453 ORTHO05D000387 2.6e-07 61.2 118 35.6
Cc07_g06500 Coffea canephora HOM05D002634 ORTHO05D003100 4.8e-06 57.0 233 22.7
BcaC08g45003 Brassica carinata HOM05D005323 ORTHO05D006820 6.3e-06 56.6 113 31.9
C06p26380 Brassica napus HOM05D005323 ORTHO05D006820 6.3e-06 56.6 113 31.9
Cpa.g.sc77.59 Carica papaya HOM05D002332 ORTHO05D002509 6.3e-06 56.6 83 36.1
QL10p012364 Quercus lobata HOM05D000453 ORTHO05D000387 8.2e-06 56.2 117 35.0


User provided reference genes

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