Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6A83T13 Lonicera japonica HOM05D003148 ORTHO05D003894 7.8e-100 367.1 178 100.0
Lj6A79G4 Lonicera japonica HOM05D003148 ORTHO05D003894 1.5e-71 273.1 206 68.0
Lj8A168T100 Lonicera japonica HOM05D003148 ORTHO05D003894 1.3e-49 200.3 200 50.0
Oeu042923.1 Olea europaea HOM05D003148 ORTHO05D003894 3.7e-49 198.7 199 48.2
Oeu062599.1 Olea europaea HOM05D003148 ORTHO05D003894 1.4e-48 196.8 199 48.7
Cc05_g13530 Coffea canephora HOM05D003148 ORTHO05D003894 6.9e-48 194.5 199 48.2
MSTRG.12966 Avicennia marina HOM05D003148 ORTHO05D003894 1.5e-47 193.4 199 48.2
HanXRQChr05g0159091 Helianthus annuus HOM05D003148 ORTHO05D003894 2.0e-47 193.0 199 48.7
CiPaw.12G128200 Carya illinoinensis HOM05D003148 ORTHO05D003894 1.7e-46 189.9 201 48.3
Actinidia35330 Actinidia chinensis HOM05D003148 ORTHO05D003894 2.9e-46 189.1 199 49.2
vmacro11740 Vaccinium macrocarpon HOM05D003148 ORTHO05D003894 3.8e-46 188.7 198 49.5
MSTRG.14430 Avicennia marina HOM05D003148 ORTHO05D003894 8.4e-46 187.6 199 47.7
Sopen07g032480 Solanum pennellii HOM05D003148 ORTHO05D003894 1.1e-45 187.2 205 46.3
vmacro09733 Vaccinium macrocarpon HOM05D003148 ORTHO05D003894 1.1e-45 187.2 205 46.3
Nitab4.5_0000397g0350 Nicotiana tabacum HOM05D003148 ORTHO05D003894 1.4e-45 186.8 205 45.4
Nitab4.5_0013016g0020 Nicotiana tabacum HOM05D003148 ORTHO05D003894 1.4e-45 186.8 205 45.4
Sc19g0008220 Simmondsia chinensis HOM05D003148 ORTHO05D003894 1.9e-45 186.4 200 46.0
QL08p011843 Quercus lobata HOM05D003148 ORTHO05D003894 2.4e-45 186.0 200 47.5
Solyc07g064330.3 Solanum lycopersicum HOM05D003148 ORTHO05D003894 2.4e-45 186.0 205 45.9
CSS0002581 Camellia sinensis var. sinensis HOM05D003148 ORTHO05D003894 3.2e-45 185.7 203 47.8
Eucgr.F00964 Eucalyptus grandis HOM05D003148 ORTHO05D003894 3.2e-45 185.7 201 46.8
Nitab4.5_0000622g0240 Nicotiana tabacum HOM05D003148 ORTHO05D003894 3.2e-45 185.7 205 44.9
CSS0048264 Camellia sinensis var. sinensis HOM05D003148 ORTHO05D003894 4.2e-45 185.3 199 47.2
AT1G50840 Arabidopsis thaliana HOM05D003148 ORTHO05D003894 5.5e-45 184.9 200 45.5
Migut.H01840 Erythranthe guttata HOM05D003148 ORTHO05D003894 5.5e-45 184.9 198 47.0
Lsat_1_v5_gn_1_29100 Lactuca sativa HOM05D003148 ORTHO05D003894 5.5e-45 184.9 199 47.2
SGA_v2.0_scaffold9G05063 Striga asiatica HOM05D003148 ORTHO05D003894 5.5e-45 184.9 199 45.7
PGSC0003DMG402013919 Solanum tuberosum HOM05D003148 ORTHO05D003894 9.3e-45 184.1 205 45.4
CiPaw.11G187400 Carya illinoinensis HOM05D003148 ORTHO05D003894 1.2e-44 183.7 201 47.3
Dinv40737 Davidia involucrata HOM05D003148 ORTHO05D003894 1.2e-44 183.7 199 48.2
Sed0003151 Sechium edule HOM05D003148 ORTHO05D003894 1.2e-44 183.7 200 46.5
Thhalv10011195m.g Eutrema salsugineum HOM05D003148 ORTHO05D003894 1.6e-44 183.3 200 45.0
AL1G58530 Arabidopsis lyrata HOM05D003148 ORTHO05D003894 2.1e-44 183.0 200 45.0
Carub.0001s3979 Capsella rubella HOM05D003148 ORTHO05D003894 2.1e-44 183.0 212 42.9
DCAR_022553 Daucus carota HOM05D003148 ORTHO05D003894 2.1e-44 183.0 199 47.2
Sp1g37600 Schrenkiella parvula HOM05D003148 ORTHO05D003894 2.1e-44 183.0 200 44.5
A05p19930 Brassica napus HOM05D003148 ORTHO05D003894 2.7e-44 182.6 200 45.0
BraA05t20898Z Brassica rapa HOM05D003148 ORTHO05D003894 2.7e-44 182.6 200 45.0
Haze_09649 Corylus avellana HOM05D003148 ORTHO05D003894 2.7e-44 182.6 201 44.8
Haze_09651 Corylus avellana HOM05D003148 ORTHO05D003894 2.7e-44 182.6 201 46.8
BcaB02g11185 Brassica carinata HOM05D003148 ORTHO05D003894 3.5e-44 182.2 200 45.0
BcaC05g27391 Brassica carinata HOM05D003148 ORTHO05D003894 3.5e-44 182.2 200 45.0
Actinidia09911 Actinidia chinensis HOM05D003148 ORTHO05D003894 4.6e-44 181.8 198 46.5
CAN.G337.107 Capsicum annuum HOM05D003148 ORTHO05D003894 4.6e-44 181.8 205 44.4
ClCG10G005550 Citrullus lanatus HOM05D003148 ORTHO05D003894 4.6e-44 181.8 200 46.5
GSVIVG01014163001 Vitis vinifera HOM05D003148 ORTHO05D003894 4.6e-44 181.8 199 46.2
PGR083G0390 Punica granatum HOM05D003148 ORTHO05D003894 6.0e-44 181.4 200 45.5
C05p33280 Brassica napus HOM05D003148 ORTHO05D003894 7.9e-44 181.0 200 44.5
BolC5t32054H Brassica oleracea HOM05D003148 ORTHO05D003894 7.9e-44 181.0 200 44.5
ECA246G3119 Erigeron canadensis HOM05D003148 ORTHO05D003894 7.9e-44 181.0 199 47.2
Cfa020382 Carpinus fangiana HOM05D003148 ORTHO05D003894 1.0e-43 180.6 201 45.8
Hund19099 Selenicereus undatus HOM05D003148 ORTHO05D003894 1.0e-43 180.6 199 47.7
Ah.13g076880 Amaranthus hybridus HOM05D001433 ORTHO05D005172 1.3e-43 180.3 199 45.7
CARHR040890 Cardamine hirsuta HOM05D003148 ORTHO05D003894 1.3e-43 180.3 200 43.5
MELO3C025395.2 Cucumis melo HOM05D003148 ORTHO05D003894 1.3e-43 180.3 201 45.8
Hund24589 Selenicereus undatus HOM05D003148 ORTHO05D003894 1.3e-43 180.3 199 45.2
Cfa020383 Carpinus fangiana HOM05D003148 ORTHO05D003894 1.8e-43 179.9 201 44.8
Rhsim06G0215400 Rhododendron simsii HOM05D003148 ORTHO05D003894 1.8e-43 179.9 198 47.5
RhsimUnG0252100 Rhododendron simsii HOM05D003148 ORTHO05D003894 1.8e-43 179.9 198 46.0
TAR624G0080 Trochodendron aralioides HOM05D003148 ORTHO05D003894 2.3e-43 179.5 199 46.7
Peaxi162Scf00450g00842 Petunia axillaris HOM05D003148 ORTHO05D003894 3.0e-43 179.1 204 45.1
Prupe.4G209500 Prunus persica HOM05D003148 ORTHO05D003894 3.0e-43 179.1 200 46.5
CsaV3_3G005270 Cucumis sativus L. HOM05D003148 ORTHO05D003894 3.9e-43 178.7 200 45.5
Manes.14G165664 Manihot esculenta HOM05D003148 ORTHO05D003894 3.9e-43 178.7 200 46.5
Rhsim04G0002300 Rhododendron simsii HOM05D003148 ORTHO05D003894 3.9e-43 178.7 198 45.5
Lj1C869T19 Lonicera japonica HOM05D003148 ORTHO05D003894 5.1e-43 178.3 200 47.0
MD11G1221900 Malus domestica HOM05D003148 ORTHO05D003894 5.1e-43 178.3 200 45.5
Aa31LG10G3300 Aethionema arabicum HOM05D003148 ORTHO05D003894 6.7e-43 177.9 200 42.0
Hma1.2p1_0938F.1_g239220 Hydrangea macrophylla HOM05D003148 ORTHO05D003894 6.7e-43 177.9 199 45.7
EL10Ac3g07232 Beta vulgaris HOM05D003148 ORTHO05D003894 1.1e-42 177.2 199 44.7
Atru.chr6.8 Acer truncatum HOM05D003148 ORTHO05D003894 1.9e-42 176.4 197 44.2
FvH4_3g22230 Fragaria vesca HOM05D003148 ORTHO05D003894 4.3e-42 175.3 199 44.2
FAN11G2520 Fragaria x ananassa HOM05D003148 ORTHO05D003894 4.3e-42 175.3 199 44.2
MBI02_g28334_MAGBIO Magnolia biondii HOM05D003148 ORTHO05D003894 5.6e-42 174.9 199 45.2
TAR626G0663 Trochodendron aralioides HOM05D003148 ORTHO05D003894 5.6e-42 174.9 199 44.7
Nn1g07107 Nelumbo nucifera HOM05D003148 ORTHO05D003894 7.4e-42 174.5 199 44.2
AUR62018343 Chenopodium quinoa HOM05D003148 ORTHO05D003894 9.6e-42 174.1 199 43.7
THA.LOC104817879 Tarenaya hassleriana HOM05D003148 ORTHO05D003894 1.3e-41 173.7 200 43.0
Duzib213G0065 Durio zibethinus HOM05D003148 ORTHO05D003894 1.6e-41 173.3 202 43.6
FAN16G3453 Fragaria x ananassa HOM05D003148 ORTHO05D003894 1.6e-41 173.3 199 43.7
Potri.001G421300 Populus trichocarpa HOM05D003148 ORTHO05D003894 1.6e-41 173.3 200 46.0
Sabra11G0122800 Salix brachista HOM05D003148 ORTHO05D003894 1.6e-41 173.3 200 46.0
Aa31LG8G7340 Aethionema arabicum HOM05D003148 ORTHO05D003894 2.8e-41 172.6 200 42.5
Ca_14812_v3 Cicer arietinum L. HOM05D003148 ORTHO05D003894 2.8e-41 172.6 200 44.5
ATR0752G224 Amborella trichopoda HOM05D003148 ORTHO05D003894 3.7e-41 172.2 200 44.5
arahy.Tifrunner.gnm1.ann1.IVZB0M Arachis hypogaea HOM05D003148 ORTHO05D003894 3.7e-41 172.2 201 44.8
COL.COLO4_09635 Corchorus olitorius HOM05D003148 ORTHO05D003894 3.7e-41 172.2 201 43.8
Sp3g18540 Schrenkiella parvula HOM05D003148 ORTHO05D003894 3.7e-41 172.2 200 42.5
arahy.Tifrunner.gnm1.ann1.5UV8SN Arachis hypogaea HOM05D003148 ORTHO05D003894 4.8e-41 171.8 201 44.8
FAN21G1173 Fragaria x ananassa HOM05D003148 ORTHO05D003894 4.8e-41 171.8 199 43.2
TPR.G16585 Trifolium pratense HOM05D003148 ORTHO05D003894 4.8e-41 171.8 204 44.6
CDE05G0870 Ceratophyllum demersum HOM05D003148 ORTHO05D003894 6.2e-41 171.4 199 45.2
CARHR096300 Cardamine hirsuta HOM05D003148 ORTHO05D003894 8.2e-41 171.0 200 41.5
C05p43810 Brassica napus HOM05D003148 ORTHO05D003894 1.1e-40 170.6 200 41.5
BolC5t33096H Brassica oleracea HOM05D003148 ORTHO05D003894 1.1e-40 170.6 200 41.5
Gohir.D01G065200 Gossypium hirsutum HOM05D003148 ORTHO05D003894 1.1e-40 170.6 201 44.8
Gorai.002G086900 Gossypium raimondii HOM05D003148 ORTHO05D003894 1.1e-40 170.6 201 44.8
arahy.Tifrunner.gnm1.ann1.SAW44B Arachis hypogaea HOM05D003148 ORTHO05D003894 1.4e-40 170.2 201 44.8
RcHm_v2.0_Chr5g0038301 Rosa chinensis HOM05D003148 ORTHO05D003894 1.4e-40 170.2 199 43.7
Sabra16G0286100 Salix brachista HOM05D003148 ORTHO05D003894 1.4e-40 170.2 200 45.0
Gohir.A01G078100 Gossypium hirsutum HOM05D003148 ORTHO05D003894 1.8e-40 169.9 201 44.8
arahy.Tifrunner.gnm1.ann1.FV4ICK Arachis hypogaea HOM05D003148 ORTHO05D003894 2.4e-40 169.5 201 44.3
Ciclev10007282m.g Citrus clementina HOM05D003148 ORTHO05D003894 3.1e-40 169.1 209 43.5
Lj6g0019529 Lotus japonicus HOM05D003148 ORTHO05D003894 4.0e-40 168.7 200 45.0
Thecc.07G043600 Theobroma cacao HOM05D003148 ORTHO05D003894 5.3e-40 168.3 201 42.8
Thhalv10019969m.g Eutrema salsugineum HOM05D003148 ORTHO05D003894 6.9e-40 167.9 200 41.0
Medtr5g092100 Medicago truncatula HOM05D003148 ORTHO05D003894 6.9e-40 167.9 201 42.8
Os08g0175300 Oryza sativa ssp. japonica HOM05D003148 ORTHO05D003894 9.0e-40 167.5 199 42.2
Lalb_Chr18g0049911 Lupinus albus HOM05D003148 ORTHO05D003894 1.2e-39 167.2 201 43.8
Aqoxy1G03292 Aquilegia oxysepala HOM05D003148 ORTHO05D003894 1.5e-39 166.8 200 43.0
Ca_06307_v3 Cicer arietinum L. HOM05D003148 ORTHO05D003894 1.5e-39 166.8 201 43.8
Glyma.08G313400 Glycine max HOM05D003148 ORTHO05D003894 1.5e-39 166.8 201 42.3
Lalb_Chr04g0248571 Lupinus albus HOM05D003148 ORTHO05D003894 2.6e-39 166.0 201 43.8
Psat5g183240 Pisum sativum HOM05D003148 ORTHO05D003894 2.6e-39 166.0 200 45.0
Aqoxy3G04136 Aquilegia oxysepala HOM05D003148 ORTHO05D003894 3.4e-39 165.6 198 42.4
Carub.0003s2050 Capsella rubella HOM05D003148 ORTHO05D003894 4.5e-39 165.2 200 41.5
Lj4g0014990 Lotus japonicus HOM05D003148 ORTHO05D003894 4.5e-39 165.2 201 43.3
Atru.chr2.3280 Acer truncatum HOM05D003148 ORTHO05D003894 1.0e-38 164.1 211 41.7
Psat2g015200 Pisum sativum HOM05D003148 ORTHO05D003894 1.3e-38 163.7 201 42.8
AT3G20540 Arabidopsis thaliana HOM05D003148 ORTHO05D003894 1.7e-38 163.3 200 41.0
A05p28320 Brassica napus HOM05D003148 ORTHO05D003894 1.7e-38 163.3 200 40.0
BraA05t21714Z Brassica rapa HOM05D003148 ORTHO05D003894 1.7e-38 163.3 200 40.0
Potri.011G136900 Populus trichocarpa HOM05D003148 ORTHO05D003894 2.9e-38 162.5 200 44.0
TPR.G29117 Trifolium pratense HOM05D003148 ORTHO05D003894 3.8e-38 162.2 201 42.3
TWI38G0810 Tripterygium wilfordii HOM05D003148 ORTHO05D003894 3.8e-38 162.2 234 40.2
VMungo0647G1963 Vigna mungo HOM05D003148 ORTHO05D003894 3.8e-38 162.2 201 42.3
Zm00001eb431790 Zea mays HOM05D003148 ORTHO05D003894 3.8e-38 162.2 202 41.1
Medtr3g050110 Medicago truncatula HOM05D003148 ORTHO05D003894 4.9e-38 161.8 200 44.5
AL3G34360 Arabidopsis lyrata HOM05D003148 ORTHO05D003894 8.4e-38 161.0 200 40.5
Glyma.14G025300 Glycine max HOM05D003148 ORTHO05D003894 8.4e-38 161.0 201 41.3
Medtr3g050140 Medicago truncatula HOM05D003148 ORTHO05D003894 1.1e-37 160.6 200 44.5
Glyma.02G289700 Glycine max HOM05D003148 ORTHO05D003894 1.4e-37 160.2 201 40.8
Glyma.19G036300 Glycine max HOM05D003148 ORTHO05D003894 1.4e-37 160.2 201 40.8
SHI31845 Sapria himalayana HOM05D003148 ORTHO05D003894 1.4e-37 160.2 200 44.0
Zm00001eb414740 Zea mays HOM05D003148 ORTHO05D003894 1.4e-37 160.2 200 40.5
Os08g0175600 Oryza sativa ssp. japonica HOM05D003148 ORTHO05D003894 7.1e-37 157.9 196 39.8
Phvul.008G265700 Phaseolus vulgaris HOM05D003148 ORTHO05D003894 7.1e-37 157.9 201 40.8
Cpa.g.sc97.33 Carica papaya HOM05D003148 ORTHO05D003894 1.6e-36 156.8 180 44.4
PSO541G1561 Papaver somniferum HOM05D003148 ORTHO05D003894 1.6e-36 156.8 206 41.3
PSO675G7850 Papaver somniferum HOM05D003148 ORTHO05D003894 1.6e-36 156.8 206 41.3
SEGI_28554 Sequoiadendron giganteum HOM05D003148 ORTHO05D003894 7.9e-36 154.5 199 39.2
Phvul.006G039400 Phaseolus vulgaris HOM05D003148 ORTHO05D003894 1.0e-35 154.1 201 41.3
PSO478G0587 Papaver somniferum HOM05D003148 ORTHO05D003894 8.7e-35 151.0 208 39.9
SEGI_31566 Sequoiadendron giganteum HOM05D003148 ORTHO05D003894 2.8e-33 146.0 226 37.2
unitig_52.g17354 Utricularia gibba HOM05D003148 ORTHO05D003894 2.8e-33 146.0 164 47.0
Pp3c8_21620 Physcomitrium patens HOM05D003148 ORTHO05D003894 3.7e-33 145.6 207 38.6
AUR62030324 Chenopodium quinoa HOM05D003148 ORTHO05D003894 6.3e-33 144.8 199 40.2
Pp3c14_14550 Physcomitrium patens HOM05D003148 ORTHO05D003894 8.2e-33 144.4 207 38.6
PSO017G6339 Papaver somniferum HOM05D003148 ORTHO05D003894 1.1e-32 144.1 208 38.9
CDE01G0619 Ceratophyllum demersum HOM05D003148 ORTHO05D003894 2.4e-32 142.9 227 35.2
Pp3c24_16390 Physcomitrium patens HOM05D003148 ORTHO05D003894 6.9e-32 141.4 207 38.6
SMO356G0432 Selaginella moellendorffii HOM05D003148 ORTHO05D003894 3.4e-31 139.0 203 38.4
CBR_g50948 Chara braunii HOM05D003148 ORTHO05D003894 7.6e-31 137.9 204 37.7
AagrBONN_evm.TU.Sc2ySwM_228.5326 Anthoceros agrestis HOM05D003148 ORTHO05D003894 3.2e-29 132.5 233 33.9
Mapoly0039s0093 Marchantia polymorpha HOM05D003148 ORTHO05D003894 6.3e-25 118.2 206 33.0
MCO10G006 Micromonas commoda HOM05D003148 ORTHO05D003894 8.2e-25 117.9 213 32.4
Os04g0637400 Oryza sativa ssp. japonica HOM05D003148 ORTHO05D003894 3.8e-22 109.0 83 53.0
Lsat_1_v5_gn_6_61201 Lactuca sativa HOM05D003148 ORTHO05D026836 2.1e-20 103.2 144 37.5
Lju760A7G19 Lonicera japonica HOM05D003148 ORTHO05D026836 2.3e-19 99.8 65 73.8
HPP92_009350 Vanilla planifolia HOM05D003148 ORTHO05D003894 5.1e-19 98.6 82 52.4
TAR624G0017 Trochodendron aralioides HOM05D003148 ORTHO05D026836 2.0e-18 96.7 136 39.0
Eucgr.F00930 Eucalyptus grandis HOM05D003148 ORTHO05D003894 1.7e-17 93.6 153 38.6
Duzib170G0320 Durio zibethinus HOM05D003148 ORTHO05D003894 4.8e-17 92.0 116 44.8
HPP92_009351 Vanilla planifolia HOM05D003148 ORTHO05D003894 2.4e-16 89.7 78 53.8
PRCOL_00004837 Prasinoderma coloniale HOM05D003148 ORTHO05D003894 2.2e-14 83.2 229 27.1
Lju760A7G20 Lonicera japonica HOM05D003148 ORTHO05D003894 2.7e-12 76.3 47 78.7


User provided reference genes

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