Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6A79G4 Lonicera japonica HOM05D003148 ORTHO05D003894 1.7e-246 855.5 417 100.0
Lj8A168T100 Lonicera japonica HOM05D003148 ORTHO05D003894 6.4e-153 544.7 448 61.6
Lj1C869T19 Lonicera japonica HOM05D003148 ORTHO05D003894 3.0e-142 509.2 439 61.0
DCAR_022553 Daucus carota HOM05D003148 ORTHO05D003894 9.5e-141 504.2 443 58.7
TAR624G0080 Trochodendron aralioides HOM05D003148 ORTHO05D003894 4.9e-137 491.9 437 57.7
Actinidia09911 Actinidia chinensis HOM05D003148 ORTHO05D003894 3.2e-136 489.2 437 57.2
EL10Ac3g07232 Beta vulgaris HOM05D003148 ORTHO05D003894 7.3e-133 478.0 436 55.0
Lsat_1_v5_gn_1_29100 Lactuca sativa HOM05D003148 ORTHO05D003894 2.1e-132 476.5 445 55.7
Dinv40737 Davidia involucrata HOM05D003148 ORTHO05D003894 2.8e-132 476.1 447 57.3
Oeu042923.1 Olea europaea HOM05D003148 ORTHO05D003894 2.8e-132 476.1 440 55.2
HanXRQChr05g0159091 Helianthus annuus HOM05D003148 ORTHO05D003894 1.8e-131 473.4 439 55.4
PGR083G0390 Punica granatum HOM05D003148 ORTHO05D003894 4.0e-131 472.2 445 54.4
CSS0048264 Camellia sinensis var. sinensis HOM05D003148 ORTHO05D003894 1.2e-130 470.7 445 55.7
Sed0003151 Sechium edule HOM05D003148 ORTHO05D003894 1.2e-130 470.7 449 55.2
Oeu062599.1 Olea europaea HOM05D003148 ORTHO05D003894 2.0e-130 469.9 438 54.6
RhsimUnG0252100 Rhododendron simsii HOM05D003148 ORTHO05D003894 2.0e-130 469.9 446 55.4
Sc19g0008220 Simmondsia chinensis HOM05D003148 ORTHO05D003894 2.0e-130 469.9 436 53.9
Solyc07g064330.3 Solanum lycopersicum HOM05D003148 ORTHO05D003894 2.6e-130 469.5 448 54.5
Sopen07g032480 Solanum pennellii HOM05D003148 ORTHO05D003894 3.4e-130 469.2 448 54.5
Nitab4.5_0000622g0240 Nicotiana tabacum HOM05D003148 ORTHO05D003894 4.4e-130 468.8 449 53.0
Rhsim04G0002300 Rhododendron simsii HOM05D003148 ORTHO05D003894 4.4e-130 468.8 446 55.2
Nitab4.5_0013016g0020 Nicotiana tabacum HOM05D003148 ORTHO05D003894 7.6e-130 468.0 449 53.0
vmacro11740 Vaccinium macrocarpon HOM05D003148 ORTHO05D003894 7.6e-130 468.0 479 54.1
Nitab4.5_0000397g0350 Nicotiana tabacum HOM05D003148 ORTHO05D003894 1.7e-129 466.8 450 52.9
Duzib213G0065 Durio zibethinus HOM05D003148 ORTHO05D003894 2.2e-129 466.5 438 55.9
Thecc.07G043600 Theobroma cacao HOM05D003148 ORTHO05D003894 4.9e-129 465.3 438 55.3
Medtr5g092100 Medicago truncatula HOM05D003148 ORTHO05D003894 6.4e-129 464.9 442 54.5
Eucgr.F00964 Eucalyptus grandis HOM05D003148 ORTHO05D003894 1.1e-128 464.2 448 54.0
Gohir.A01G078100 Gossypium hirsutum HOM05D003148 ORTHO05D003894 1.1e-128 464.2 438 56.4
vmacro09733 Vaccinium macrocarpon HOM05D003148 ORTHO05D003894 1.1e-128 464.2 458 53.5
AUR62018343 Chenopodium quinoa HOM05D003148 ORTHO05D003894 1.4e-128 463.8 438 53.9
PGSC0003DMG402013919 Solanum tuberosum HOM05D003148 ORTHO05D003894 1.4e-128 463.8 448 53.8
Hma1.2p1_0938F.1_g239220 Hydrangea macrophylla HOM05D003148 ORTHO05D003894 1.9e-128 463.4 436 55.5
MSTRG.14430 Avicennia marina HOM05D003148 ORTHO05D003894 2.4e-128 463.0 448 55.4
Gorai.002G086900 Gossypium raimondii HOM05D003148 ORTHO05D003894 4.1e-128 462.2 438 55.9
ClCG10G005550 Citrullus lanatus HOM05D003148 ORTHO05D003894 5.4e-128 461.8 450 54.9
Nn1g07107 Nelumbo nucifera HOM05D003148 ORTHO05D003894 5.4e-128 461.8 437 52.9
CiPaw.12G128200 Carya illinoinensis HOM05D003148 ORTHO05D003894 9.2e-128 461.1 444 54.5
ECA246G3119 Erigeron canadensis HOM05D003148 ORTHO05D003894 9.2e-128 461.1 443 54.4
RcHm_v2.0_Chr5g0038301 Rosa chinensis HOM05D003148 ORTHO05D003894 9.2e-128 461.1 445 53.5
FAN16G3453 Fragaria x ananassa HOM05D003148 ORTHO05D003894 1.2e-127 460.7 446 53.8
Hund19099 Selenicereus undatus HOM05D003148 ORTHO05D003894 1.6e-127 460.3 436 54.6
Gohir.D01G065200 Gossypium hirsutum HOM05D003148 ORTHO05D003894 2.1e-127 459.9 438 55.7
Haze_09651 Corylus avellana HOM05D003148 ORTHO05D003894 2.7e-127 459.5 444 55.6
MD11G1221900 Malus domestica HOM05D003148 ORTHO05D003894 2.7e-127 459.5 443 55.1
FAN21G1173 Fragaria x ananassa HOM05D003148 ORTHO05D003894 3.5e-127 459.1 446 53.6
Rhsim06G0215400 Rhododendron simsii HOM05D003148 ORTHO05D003894 4.6e-127 458.8 452 55.1
Peaxi162Scf00450g00842 Petunia axillaris HOM05D003148 ORTHO05D003894 6.0e-127 458.4 448 53.3
Hund24589 Selenicereus undatus HOM05D003148 ORTHO05D003894 7.8e-127 458.0 436 53.0
CAN.G337.107 Capsicum annuum HOM05D003148 ORTHO05D003894 1.0e-126 457.6 447 52.6
FvH4_3g22230 Fragaria vesca HOM05D003148 ORTHO05D003894 1.0e-126 457.6 446 53.6
FAN11G2520 Fragaria x ananassa HOM05D003148 ORTHO05D003894 1.0e-126 457.6 446 53.6
Psat2g015200 Pisum sativum HOM05D003148 ORTHO05D003894 1.0e-126 457.6 438 53.9
QL08p011843 Quercus lobata HOM05D003148 ORTHO05D003894 1.7e-126 456.8 450 54.9
COL.COLO4_09635 Corchorus olitorius HOM05D003148 ORTHO05D003894 2.3e-126 456.4 439 54.4
TPR.G29117 Trifolium pratense HOM05D003148 ORTHO05D003894 3.0e-126 456.1 438 54.1
Cpa.g.sc97.33 Carica papaya HOM05D003148 ORTHO05D003894 3.9e-126 455.7 406 56.9
Cfa020382 Carpinus fangiana HOM05D003148 ORTHO05D003894 3.9e-126 455.7 444 55.2
GSVIVG01014163001 Vitis vinifera HOM05D003148 ORTHO05D003894 6.6e-126 454.9 442 53.4
Prupe.4G209500 Prunus persica HOM05D003148 ORTHO05D003894 8.6e-126 454.5 446 54.3
MSTRG.12966 Avicennia marina HOM05D003148 ORTHO05D003894 1.5e-125 453.8 443 53.5
Ca_06307_v3 Cicer arietinum L. HOM05D003148 ORTHO05D003894 1.5e-125 453.8 438 54.8
Ah.13g076880 Amaranthus hybridus HOM05D001433 ORTHO05D005172 3.3e-125 452.6 436 53.2
CDE05G0870 Ceratophyllum demersum HOM05D003148 ORTHO05D003894 3.3e-125 452.6 442 54.3
Lj4g0014990 Lotus japonicus HOM05D003148 ORTHO05D003894 4.3e-125 452.2 438 54.6
SGA_v2.0_scaffold9G05063 Striga asiatica HOM05D003148 ORTHO05D003894 7.3e-125 451.4 443 52.8
arahy.Tifrunner.gnm1.ann1.5UV8SN Arachis hypogaea HOM05D003148 ORTHO05D003894 4.7e-124 448.7 440 53.6
Ca_14812_v3 Cicer arietinum L. HOM05D003148 ORTHO05D003894 1.4e-123 447.2 438 54.3
Glyma.14G025300 Glycine max HOM05D003148 ORTHO05D003894 3.1e-123 446.0 438 53.2
Cc05_g13530 Coffea canephora HOM05D003148 ORTHO05D003894 1.2e-122 444.1 377 59.4
Lalb_Chr04g0248571 Lupinus albus HOM05D003148 ORTHO05D003894 2.6e-122 443.0 438 53.2
MELO3C025395.2 Cucumis melo HOM05D003148 ORTHO05D003894 3.4e-122 442.6 441 53.7
Glyma.02G289700 Glycine max HOM05D003148 ORTHO05D003894 3.4e-122 442.6 439 52.8
Aqoxy3G04136 Aquilegia oxysepala HOM05D003148 ORTHO05D003894 4.4e-122 442.2 439 53.5
AT1G50840 Arabidopsis thaliana HOM05D003148 ORTHO05D003894 4.4e-122 442.2 444 50.5
Manes.14G165664 Manihot esculenta HOM05D003148 ORTHO05D003894 4.4e-122 442.2 438 53.0
Actinidia35330 Actinidia chinensis HOM05D003148 ORTHO05D003894 1.3e-121 440.7 384 57.3
CsaV3_3G005270 Cucumis sativus L. HOM05D003148 ORTHO05D003894 2.2e-121 439.9 440 53.4
Cfa020383 Carpinus fangiana HOM05D003148 ORTHO05D003894 6.4e-121 438.3 441 52.8
Haze_09649 Corylus avellana HOM05D003148 ORTHO05D003894 6.4e-121 438.3 452 52.9
Lj6g0019529 Lotus japonicus HOM05D003148 ORTHO05D003894 6.4e-121 438.3 438 53.2
MBI02_g28334_MAGBIO Magnolia biondii HOM05D003148 ORTHO05D003894 1.1e-120 437.6 451 50.3
VMungo0647G1963 Vigna mungo HOM05D003148 ORTHO05D003894 1.4e-120 437.2 438 52.5
Aa31LG10G3300 Aethionema arabicum HOM05D003148 ORTHO05D003894 1.9e-120 436.8 439 49.9
AUR62030324 Chenopodium quinoa HOM05D003148 ORTHO05D003894 3.2e-120 436.0 436 52.5
Sp1g37600 Schrenkiella parvula HOM05D003148 ORTHO05D003894 4.2e-120 435.6 447 49.4
Ciclev10007282m.g Citrus clementina HOM05D003148 ORTHO05D003894 7.1e-120 434.9 446 52.7
TAR626G0663 Trochodendron aralioides HOM05D003148 ORTHO05D003894 1.2e-119 434.1 375 57.3
C05p43810 Brassica napus HOM05D003148 ORTHO05D003894 1.6e-119 433.7 449 50.1
ATR0752G224 Amborella trichopoda HOM05D003148 ORTHO05D003894 2.1e-119 433.3 444 51.4
arahy.Tifrunner.gnm1.ann1.FV4ICK Arachis hypogaea HOM05D003148 ORTHO05D003894 2.1e-119 433.3 440 53.0
BcaB02g11185 Brassica carinata HOM05D003148 ORTHO05D003894 3.5e-119 432.6 443 49.0
Psat5g183240 Pisum sativum HOM05D003148 ORTHO05D003894 3.5e-119 432.6 438 53.2
Potri.001G421300 Populus trichocarpa HOM05D003148 ORTHO05D003894 3.5e-119 432.6 447 52.3
Aqoxy1G03292 Aquilegia oxysepala HOM05D003148 ORTHO05D003894 4.6e-119 432.2 441 50.6
A05p19930 Brassica napus HOM05D003148 ORTHO05D003894 7.8e-119 431.4 443 49.2
BraA05t20898Z Brassica rapa HOM05D003148 ORTHO05D003894 7.8e-119 431.4 443 49.2
Aa31LG8G7340 Aethionema arabicum HOM05D003148 ORTHO05D003894 1.0e-118 431.0 450 49.3
BolC5t33096H Brassica oleracea HOM05D003148 ORTHO05D003894 1.0e-118 431.0 449 50.1
Lalb_Chr18g0049911 Lupinus albus HOM05D003148 ORTHO05D003894 1.3e-118 430.6 438 52.5
BcaC05g27391 Brassica carinata HOM05D003148 ORTHO05D003894 1.7e-118 430.3 443 48.8
arahy.Tifrunner.gnm1.ann1.IVZB0M Arachis hypogaea HOM05D003148 ORTHO05D003894 2.3e-118 429.9 465 50.8
Thhalv10011195m.g Eutrema salsugineum HOM05D003148 ORTHO05D003894 3.0e-118 429.5 451 48.8
Glyma.08G313400 Glycine max HOM05D003148 ORTHO05D003894 6.6e-118 428.3 444 51.4
C05p33280 Brassica napus HOM05D003148 ORTHO05D003894 8.7e-118 427.9 443 48.5
BolC5t32054H Brassica oleracea HOM05D003148 ORTHO05D003894 8.7e-118 427.9 443 48.5
AL1G58530 Arabidopsis lyrata HOM05D003148 ORTHO05D003894 2.5e-117 426.4 445 48.1
Migut.H01840 Erythranthe guttata HOM05D003148 ORTHO05D003894 2.5e-117 426.4 448 51.1
CARHR096300 Cardamine hirsuta HOM05D003148 ORTHO05D003894 3.3e-117 426.0 449 49.2
CARHR040890 Cardamine hirsuta HOM05D003148 ORTHO05D003894 5.6e-117 425.2 453 47.5
Atru.chr6.8 Acer truncatum HOM05D003148 ORTHO05D003894 9.6e-117 424.5 432 50.9
Sabra16G0286100 Salix brachista HOM05D003148 ORTHO05D003894 1.6e-116 423.7 448 51.8
Sp3g18540 Schrenkiella parvula HOM05D003148 ORTHO05D003894 1.6e-116 423.7 449 49.2
Medtr3g050110 Medicago truncatula HOM05D003148 ORTHO05D003894 2.8e-116 422.9 437 51.7
Phvul.008G265700 Phaseolus vulgaris HOM05D003148 ORTHO05D003894 6.2e-116 421.8 438 51.4
Carub.0003s2050 Capsella rubella HOM05D003148 ORTHO05D003894 1.1e-115 421.0 450 49.8
TWI38G0810 Tripterygium wilfordii HOM05D003148 ORTHO05D003894 1.1e-115 421.0 470 49.8
Carub.0001s3979 Capsella rubella HOM05D003148 ORTHO05D003894 1.8e-115 420.2 451 46.8
Medtr3g050140 Medicago truncatula HOM05D003148 ORTHO05D003894 3.1e-115 419.5 437 51.5
AL3G34360 Arabidopsis lyrata HOM05D003148 ORTHO05D003894 5.3e-115 418.7 450 49.1
PSO541G1561 Papaver somniferum HOM05D003148 ORTHO05D003894 9.0e-115 417.9 447 50.1
AT3G20540 Arabidopsis thaliana HOM05D003148 ORTHO05D003894 1.5e-114 417.2 450 49.1
PSO675G7850 Papaver somniferum HOM05D003148 ORTHO05D003894 2.0e-114 416.8 446 49.3
Phvul.006G039400 Phaseolus vulgaris HOM05D003148 ORTHO05D003894 2.6e-114 416.4 438 51.1
A05p28320 Brassica napus HOM05D003148 ORTHO05D003894 3.4e-114 416.0 451 47.9
BraA05t21714Z Brassica rapa HOM05D003148 ORTHO05D003894 3.4e-114 416.0 451 47.9
Potri.011G136900 Populus trichocarpa HOM05D003148 ORTHO05D003894 4.5e-114 415.6 448 51.1
Thhalv10019969m.g Eutrema salsugineum HOM05D003148 ORTHO05D003894 2.9e-113 412.9 463 47.3
arahy.Tifrunner.gnm1.ann1.SAW44B Arachis hypogaea HOM05D003148 ORTHO05D003894 1.1e-112 411.0 458 50.2
Os08g0175300 Oryza sativa ssp. japonica HOM05D003148 ORTHO05D003894 7.1e-112 408.3 439 49.4
CSS0002581 Camellia sinensis var. sinensis HOM05D003148 ORTHO05D003894 9.3e-112 407.9 292 67.5
Atru.chr2.3280 Acer truncatum HOM05D003148 ORTHO05D003894 3.5e-111 406.0 452 48.7
Zm00001eb414740 Zea mays HOM05D003148 ORTHO05D003894 5.6e-109 398.7 439 48.3
Sabra11G0122800 Salix brachista HOM05D003148 ORTHO05D003894 6.2e-108 395.2 506 45.5
THA.LOC104817879 Tarenaya hassleriana HOM05D003148 ORTHO05D003894 3.1e-107 392.9 379 51.7
Zm00001eb431790 Zea mays HOM05D003148 ORTHO05D003894 1.7e-105 387.1 440 46.8
PSO017G6339 Papaver somniferum HOM05D003148 ORTHO05D003894 2.4e-104 383.3 446 46.6
SEGI_28554 Sequoiadendron giganteum HOM05D003148 ORTHO05D003894 4.6e-103 379.0 450 44.2
TPR.G16585 Trifolium pratense HOM05D003148 ORTHO05D003894 1.6e-100 370.5 290 61.0
Pp3c14_14550 Physcomitrium patens HOM05D003148 ORTHO05D003894 3.7e-100 369.4 452 44.5
Pp3c8_21620 Physcomitrium patens HOM05D003148 ORTHO05D003894 2.6e-98 363.2 452 43.8
PSO478G0587 Papaver somniferum HOM05D003148 ORTHO05D003894 7.1e-96 355.1 300 58.0
SHI31845 Sapria himalayana HOM05D003148 ORTHO05D003894 9.3e-96 354.8 519 40.8
Pp3c24_16390 Physcomitrium patens HOM05D003148 ORTHO05D003894 2.3e-94 350.1 449 43.2
Os08g0175600 Oryza sativa ssp. japonica HOM05D003148 ORTHO05D003894 5.1e-94 349.0 290 57.2
SMO356G0432 Selaginella moellendorffii HOM05D003148 ORTHO05D003894 7.2e-88 328.6 442 41.6
AagrBONN_evm.TU.Sc2ySwM_228.5326 Anthoceros agrestis HOM05D003148 ORTHO05D003894 2.1e-87 327.0 465 39.4
CBR_g50948 Chara braunii HOM05D003148 ORTHO05D003894 1.3e-84 317.8 527 35.9
Mapoly0039s0093 Marchantia polymorpha HOM05D003148 ORTHO05D003894 2.8e-84 316.6 453 39.5
unitig_52.g17354 Utricularia gibba HOM05D003148 ORTHO05D003894 1.5e-82 310.8 434 42.2
CDE01G0619 Ceratophyllum demersum HOM05D003148 ORTHO05D003894 3.8e-81 306.2 404 42.1
Glyma.19G036300 Glycine max HOM05D003148 ORTHO05D003894 3.8e-81 306.2 348 47.7
CiPaw.11G187400 Carya illinoinensis HOM05D003148 ORTHO05D003894 2.5e-80 303.5 354 48.3
Duzib170G0320 Durio zibethinus HOM05D003148 ORTHO05D003894 1.3e-73 281.2 203 66.5
Lj6A83T13 Lonicera japonica HOM05D003148 ORTHO05D003894 3.0e-70 270.0 206 68.0
Lju760A7G20 Lonicera japonica HOM05D003148 ORTHO05D003894 3.1e-67 260.0 179 75.4
MCO10G006 Micromonas commoda HOM05D003148 ORTHO05D003894 5.3e-67 259.2 477 34.8
SEGI_31566 Sequoiadendron giganteum HOM05D003148 ORTHO05D003894 1.9e-64 250.8 369 39.6
Eucgr.F00930 Eucalyptus grandis HOM05D003148 ORTHO05D003894 1.0e-57 228.4 251 49.0
HPP92_009351 Vanilla planifolia HOM05D003148 ORTHO05D003894 6.5e-57 225.7 168 64.3
PRCOL_00004837 Prasinoderma coloniale HOM05D003148 ORTHO05D003894 2.1e-47 194.1 499 30.9
Lj6C83G1 Lonicera japonica HOM05D003148 ORTHO05D003894 6.1e-47 192.6 110 85.5
Os04g0637400 Oryza sativa ssp. japonica HOM05D003148 ORTHO05D003894 1.6e-42 177.9 251 39.8
Lsat_1_v5_gn_6_61201 Lactuca sativa HOM05D003148 ORTHO05D026836 6.1e-39 166.0 158 52.5
HPP92_009350 Vanilla planifolia HOM05D003148 ORTHO05D003894 2.3e-38 164.1 228 43.4
TAR624G0017 Trochodendron aralioides HOM05D003148 ORTHO05D026836 2.6e-37 160.6 137 59.1
Lju760A7G19 Lonicera japonica HOM05D003148 ORTHO05D026836 6.4e-36 156.0 82 91.5
PRCOL_00004766 Prasinoderma coloniale HOM05D003148 ORTHO05D003894 3.2e-35 153.7 367 30.0
CiPaw.11G187500 Carya illinoinensis HOM05D003148 ORTHO05D003894 1.5e-21 108.2 69 71.0
Ciclev10008272m.g Citrus clementina HOM05D003148 ORTHO05D003894 1.7e-20 104.8 65 72.3
Duzib170G0998 Durio zibethinus HOM05D003148 ORTHO05D003894 2.7e-18 97.4 166 36.7
Nn1g03580 Nelumbo nucifera HOM05D003148 ORTHO05D003894 4.6e-18 96.7 122 45.1
HanXRQChr05g0159101 Helianthus annuus HOM05D003148 ORTHO05D003894 1.1e-16 92.0 105 48.6
Cre08.g363837 Chlamydomonas reinhardtii HOM05D003148 ORTHO05D003894 1.8e-14 84.7 71 53.5
CSS0009232 Camellia sinensis var. sinensis HOM05D003148 ORTHO05D003894 5.2e-14 83.2 119 39.5
TPR.G95 Trifolium pratense HOM05D003148 ORTHO05D030578 8.9e-14 82.4 114 41.2
COL.COLO4_09803 Corchorus olitorius HOM05D021535 ORTHO05D000431 3.9e-09 67.0 180 28.9
AL3G41470 Arabidopsis lyrata HOM05D003148 ORTHO05D026836 5.1e-09 66.6 58 48.3
SEGI_08935 Sequoiadendron giganteum HOM05D003148 ORTHO05D003894 8.7e-09 65.9 107 39.3
FAN25G2336 Fragaria x ananassa HOM05D003148 ORTHO05D003894 2.5e-08 64.3 43 65.1
HanXRQChr05g0159391 Helianthus annuus HOM05D003148 ORTHO05D003894 2.8e-07 60.8 76 46.1
TAR626G0592 Trochodendron aralioides HOM05D003148 ORTHO05D003894 1.8e-06 58.2 59 50.8


User provided reference genes

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