Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0027380 Lotus japonicus HOM05D003051 ORTHO05D019772 2.3e-41 171.8 86 100.0
Lj5g0010291 Lotus japonicus HOM05D000993 ORTHO05D019772 9.7e-24 113.2 54 100.0
Atru.chr13.2284 Acer truncatum HOM05D003051 ORTHO05D003932 1.5e-19 99.4 58 82.8
Lj5g0018018 Lotus japonicus HOM05D003051 ORTHO05D003932 2.5e-19 98.6 54 88.9
CAN.G9.7 Capsicum annuum HOM05D003051 ORTHO05D003932 3.2e-19 98.2 56 83.9
Nitab4.5_0000318g0090 Nicotiana tabacum HOM05D003051 ORTHO05D003932 3.2e-19 98.2 53 88.7
Actinidia17302 Actinidia chinensis HOM05D003051 ORTHO05D003932 5.5e-19 97.4 58 81.0
ClCG08G016130 Citrullus lanatus HOM05D003051 ORTHO05D003932 5.5e-19 97.4 56 82.1
MELO3C010839.2 Cucumis melo HOM05D003051 ORTHO05D003932 5.5e-19 97.4 56 82.1
CsaV3_2G026490 Cucumis sativus L. HOM05D003051 ORTHO05D003932 5.5e-19 97.4 56 82.1
Medtr1g019000 Medicago truncatula HOM05D003051 ORTHO05D019772 5.5e-19 97.4 54 87.0
Gorai.002G090700 Gossypium raimondii HOM05D003051 ORTHO05D003932 7.2e-19 97.1 54 83.3
Nitab4.5_0002021g0050 Nicotiana tabacum HOM05D003051 ORTHO05D003932 7.2e-19 97.1 53 86.8
AL7G14600 Arabidopsis lyrata HOM05D003051 ORTHO05D003932 9.4e-19 96.7 58 74.1
Ciclev10025496m.g Citrus clementina HOM05D003051 ORTHO05D003932 9.4e-19 96.7 54 83.3
QL02p004168 Quercus lobata HOM05D003051 ORTHO05D003932 9.4e-19 96.7 54 83.3
Peaxi162Scf00699g00636 Petunia axillaris HOM05D003051 ORTHO05D003932 1.2e-18 96.3 53 86.8
Psat2g055640 Pisum sativum HOM05D003051 ORTHO05D003932 1.2e-18 96.3 56 82.1
TPR.G18000 Trifolium pratense HOM05D003051 ORTHO05D003932 1.2e-18 96.3 56 82.1
BcaNung00731 Brassica carinata HOM05D003051 ORTHO05D003932 1.6e-18 95.9 58 74.1
A01p02390 Brassica napus HOM05D003051 ORTHO05D003932 1.6e-18 95.9 58 74.1
A03p64250 Brassica napus HOM05D003051 ORTHO05D003932 1.6e-18 95.9 58 74.1
C01p02600 Brassica napus HOM05D003051 ORTHO05D003932 1.6e-18 95.9 58 74.1
C07p61710 Brassica napus HOM05D003051 ORTHO05D003932 1.6e-18 95.9 58 74.1
BolC7t46596H Brassica oleracea HOM05D003051 ORTHO05D003932 1.6e-18 95.9 58 74.1
BraA01t00227Z Brassica rapa HOM05D003051 ORTHO05D003932 1.6e-18 95.9 58 74.1
BraA03t15496Z Brassica rapa HOM05D003051 ORTHO05D003932 1.6e-18 95.9 58 74.1
CANSAT78G1339 Cannabis sativa HOM05D003051 ORTHO05D003932 1.6e-18 95.9 54 85.2
Carub.0007s0384 Capsella rubella HOM05D003051 ORTHO05D003932 1.6e-18 95.9 58 74.1
CARHR244800 Cardamine hirsuta HOM05D003051 ORTHO05D003932 1.6e-18 95.9 58 74.1
Ca_05631_v3 Cicer arietinum L. HOM05D003051 ORTHO05D003932 1.6e-18 95.9 54 85.2
COL.COLO4_31149 Corchorus olitorius HOM05D003051 ORTHO05D003932 1.6e-18 95.9 54 85.2
Eucgr.D00310 Eucalyptus grandis HOM05D003051 ORTHO05D003932 1.6e-18 95.9 54 85.2
Thhalv10025064m.g Eutrema salsugineum HOM05D003051 ORTHO05D003932 1.6e-18 95.9 58 74.1
Manes.12G080800 Manihot esculenta HOM05D003051 ORTHO05D003932 1.6e-18 95.9 54 85.2
Medtr3g054030 Medicago truncatula HOM05D003051 ORTHO05D003932 1.6e-18 95.9 54 85.2
Medtr5g072020 Medicago truncatula HOM05D003051 ORTHO05D003932 1.6e-18 95.9 54 85.2
Rhsim10G0081500 Rhododendron simsii HOM05D003051 ORTHO05D003932 1.6e-18 95.9 54 85.2
Sp7g34130 Schrenkiella parvula HOM05D003051 ORTHO05D003932 1.6e-18 95.9 58 74.1
Sc02g0008680 Simmondsia chinensis HOM05D003051 ORTHO05D003932 1.6e-18 95.9 55 81.8
THA.LOC104807468 Tarenaya hassleriana HOM05D003051 ORTHO05D003932 1.6e-18 95.9 58 75.9
TAR636G2510 Trochodendron aralioides HOM05D003051 ORTHO05D003932 1.6e-18 95.9 54 85.2
vmacro08505 Vaccinium macrocarpon HOM05D003051 ORTHO05D003932 1.6e-18 95.9 54 85.2
vmacro22602 Vaccinium macrocarpon HOM05D003051 ORTHO05D003932 1.6e-18 95.9 54 85.2
Cc08_g11730 Coffea canephora HOM05D003051 ORTHO05D003932 2.1e-18 95.5 54 85.2
Phvul.001G024100 Phaseolus vulgaris HOM05D003051 ORTHO05D003932 2.1e-18 95.5 54 83.3
Potri.015G034600 Populus trichocarpa HOM05D003051 ORTHO05D003932 2.1e-18 95.5 58 75.9
Sed0025362 Sechium edule HOM05D003051 ORTHO05D003932 2.1e-18 95.5 56 80.4
Haze_04268 Corylus avellana HOM05D003051 ORTHO05D003932 2.7e-18 95.1 54 81.5
Haze_06246 Corylus avellana HOM05D003051 ORTHO05D003932 2.7e-18 95.1 54 81.5
Duzib160G0152 Durio zibethinus HOM05D003051 ORTHO05D003932 2.7e-18 95.1 54 81.5
Duzib235G0371 Durio zibethinus HOM05D003051 ORTHO05D003932 2.7e-18 95.1 54 81.5
Migut.B00582 Erythranthe guttata HOM05D003051 ORTHO05D003932 2.7e-18 95.1 58 75.9
Gohir.A10G001900 Gossypium hirsutum HOM05D003051 ORTHO05D003932 2.7e-18 95.1 54 81.5
Gohir.A10G159000 Gossypium hirsutum HOM05D003051 ORTHO05D003932 2.7e-18 95.1 54 81.5
Gohir.D10G002000 Gossypium hirsutum HOM05D003051 ORTHO05D003932 2.7e-18 95.1 54 81.5
Gohir.D10G084100 Gossypium hirsutum HOM05D003051 ORTHO05D003932 2.7e-18 95.1 54 81.5
Gorai.011G002400 Gossypium raimondii HOM05D003051 ORTHO05D003932 2.7e-18 95.1 54 81.5
Gorai.011G091200 Gossypium raimondii HOM05D003051 ORTHO05D003932 2.7e-18 95.1 54 81.5
Solyc08g066020.3 Solanum lycopersicum HOM05D003051 ORTHO05D003932 2.7e-18 95.1 53 84.9
Sopen08g019680 Solanum pennellii HOM05D003051 ORTHO05D003932 2.7e-18 95.1 53 84.9
Thecc.06G056600 Theobroma cacao HOM05D003051 ORTHO05D003932 2.7e-18 95.1 54 81.5
Aa31LG6G13270 Aethionema arabicum HOM05D003051 ORTHO05D003932 3.6e-18 94.7 58 72.4
Cfa006516 Carpinus fangiana HOM05D003051 ORTHO05D003932 3.6e-18 94.7 54 79.6
AUR62035016 Chenopodium quinoa HOM05D003051 ORTHO05D003932 3.6e-18 94.7 55 81.8
Ca_13275_v3 Cicer arietinum L. HOM05D003051 ORTHO05D003932 3.6e-18 94.7 54 83.3
TPR.G3789 Trifolium pratense HOM05D003051 ORTHO05D003932 3.6e-18 94.7 54 83.3
TWI18G0714 Tripterygium wilfordii HOM05D003051 ORTHO05D003932 3.6e-18 94.7 58 77.6
CAN.G2.17 Capsicum annuum HOM05D003051 ORTHO05D003932 4.7e-18 94.4 54 83.3
AUR62041898 Chenopodium quinoa HOM05D003051 ORTHO05D003932 4.7e-18 94.4 55 81.8
Glyma.14G085100 Glycine max HOM05D003051 ORTHO05D003932 4.7e-18 94.4 54 83.3
MD08G1095600 Malus domestica HOM05D003051 ORTHO05D003932 4.7e-18 94.4 56 80.4
MD15G1077700 Malus domestica HOM05D003051 ORTHO05D003932 4.7e-18 94.4 56 80.4
SalBow5G0877 Salvia bowleyana HOM05D003051 ORTHO05D003932 4.7e-18 94.4 56 80.4
Solyc11g019950.2 Solanum lycopersicum HOM05D003051 ORTHO05D003932 4.7e-18 94.4 54 83.3
Sopen11g010060 Solanum pennellii HOM05D003051 ORTHO05D003932 4.7e-18 94.4 54 83.3
PGSC0003DMG400027619 Solanum tuberosum HOM05D003051 ORTHO05D003932 4.7e-18 94.4 54 83.3
TAR374G0623 Trochodendron aralioides HOM05D003051 ORTHO05D003932 4.7e-18 94.4 54 83.3
TAR374G0874 Trochodendron aralioides HOM05D003051 ORTHO05D003932 4.7e-18 94.4 54 83.3
VMungo0647G0828 Vigna mungo HOM05D003051 ORTHO05D003932 4.7e-18 94.4 54 83.3
AUR62025029 Chenopodium quinoa HOM05D003051 ORTHO05D003932 6.1e-18 94.0 63 71.4
Dinv36492 Davidia involucrata HOM05D003051 ORTHO05D003932 6.1e-18 94.0 58 74.1
Dinv37116 Davidia involucrata HOM05D003051 ORTHO05D003932 6.1e-18 94.0 58 74.1
ECA232G4354 Erigeron canadensis HOM05D003051 ORTHO05D003932 6.1e-18 94.0 58 75.9
FAN15G3751 Fragaria x ananassa HOM05D003051 ORTHO05D003932 6.1e-18 94.0 56 80.4
FAN27G0244 Fragaria x ananassa HOM05D003051 ORTHO05D003932 6.1e-18 94.0 56 80.4
Lalb_Chr14g0368521 Lupinus albus HOM05D003051 ORTHO05D003932 6.1e-18 94.0 53 84.9
Lalb_Chr22g0354981 Lupinus albus HOM05D003051 ORTHO05D003932 6.1e-18 94.0 53 84.9
SGA_v2.0_scaffold83G26334 Striga asiatica HOM05D003051 ORTHO05D003932 6.1e-18 94.0 54 81.5
THA.LOC104804240 Tarenaya hassleriana HOM05D003051 ORTHO05D003932 6.1e-18 94.0 58 74.1
GSVIVG01000259001 Vitis vinifera HOM05D003051 ORTHO05D003932 6.1e-18 94.0 54 81.5
FvH4_2g33970 Fragaria vesca HOM05D003051 ORTHO05D003932 8.0e-18 93.6 54 83.3
FAN24G2348 Fragaria x ananassa HOM05D003051 ORTHO05D003932 8.0e-18 93.6 54 83.3
Nitab4.5_0001579g0140 Nicotiana tabacum HOM05D003051 ORTHO05D003932 8.0e-18 93.6 54 83.3
Sabra12G0030700 Salix brachista HOM05D003051 ORTHO05D003932 8.0e-18 93.6 58 74.1
Sabra15G0028600 Salix brachista HOM05D003051 ORTHO05D003932 8.0e-18 93.6 58 74.1
unitig_62.g23741 Utricularia gibba HOM05D003051 ORTHO05D003932 8.0e-18 93.6 54 81.5
vmacro18084 Vaccinium macrocarpon HOM05D003051 ORTHO05D003932 8.0e-18 93.6 54 81.5
CDE03G0158 Ceratophyllum demersum HOM05D003051 ORTHO05D003932 1.0e-17 93.2 54 81.5
CDE04G1802 Ceratophyllum demersum HOM05D003051 ORTHO05D003932 1.0e-17 93.2 54 81.5
Glyma.17G239700 Glycine max HOM05D003051 ORTHO05D003932 1.0e-17 93.2 54 81.5
HanXRQChr05g0134541 Helianthus annuus HOM05D003051 ORTHO05D003932 1.0e-17 93.2 54 81.5
HanXRQChr05g0134611 Helianthus annuus HOM05D003051 ORTHO05D003932 1.0e-17 93.2 54 81.5
HanXRQChr05g0138591 Helianthus annuus HOM05D003051 ORTHO05D003932 1.0e-17 93.2 54 81.5
HanXRQChr05g0150761 Helianthus annuus HOM05D003051 ORTHO05D003932 1.0e-17 93.2 54 81.5
Potri.012G043800 Populus trichocarpa HOM05D003051 ORTHO05D003932 1.0e-17 93.2 58 72.4
CiPaw.09G069100 Carya illinoinensis HOM05D003051 ORTHO05D003932 1.4e-17 92.8 54 79.6
MBI18_g02835_MAGBIO Magnolia biondii HOM05D003051 ORTHO05D003932 1.4e-17 92.8 54 79.6
ATR0222G029 Amborella trichopoda HOM05D003051 ORTHO05D003932 1.8e-17 92.4 56 76.8
Aqoxy4G02974 Aquilegia oxysepala HOM05D003051 ORTHO05D003932 1.8e-17 92.4 58 74.1
MSTRG.20290 Avicennia marina HOM05D003051 ORTHO05D003932 1.8e-17 92.4 54 79.6
DCAR_020911 Daucus carota HOM05D003051 ORTHO05D003932 1.8e-17 92.4 58 74.1
Lsat_1_v5_gn_8_62240 Lactuca sativa HOM05D003051 ORTHO05D003932 1.8e-17 92.4 57 75.4
Lalb_Chr24g0399381 Lupinus albus HOM05D003051 ORTHO05D003932 1.8e-17 92.4 53 83.0
Prupe.1G431600 Prunus persica HOM05D003051 ORTHO05D003932 1.8e-17 92.4 54 81.5
Hund22046 Selenicereus undatus HOM05D003051 ORTHO05D003932 1.8e-17 92.4 57 73.7
SGA_v2.0_scaffold28G11959 Striga asiatica HOM05D003051 ORTHO05D003932 1.8e-17 92.4 54 79.6
Aqoxy2G01411 Aquilegia oxysepala HOM05D003051 ORTHO05D003932 2.3e-17 92.0 54 79.6
Cc11_g04320 Coffea canephora HOM05D003051 ORTHO05D003932 2.3e-17 92.0 54 83.3
Os10g0189600 Oryza sativa ssp. japonica HOM05D003051 ORTHO05D003932 2.3e-17 92.0 55 80.0
PGR102G2746 Punica granatum HOM05D003051 ORTHO05D003932 2.3e-17 92.0 54 79.6
RcHm_v2.0_Chr6g0308441 Rosa chinensis HOM05D003051 ORTHO05D003932 2.3e-17 92.0 54 81.5
Lsat_1_v5_gn_5_96860 Lactuca sativa HOM05D003051 ORTHO05D003932 3.0e-17 91.7 54 81.5
MD02G1254800 Malus domestica HOM05D003051 ORTHO05D019772 3.0e-17 91.7 63 71.4
Os03g0252800 Oryza sativa ssp. japonica HOM05D003051 ORTHO05D003932 3.0e-17 91.7 55 78.2
TWI63G1017 Tripterygium wilfordii HOM05D003051 ORTHO05D003932 4.0e-17 91.3 54 77.8
arahy.Tifrunner.gnm1.ann1.11SE8F Arachis hypogaea HOM05D003051 ORTHO05D003932 8.8e-17 90.1 54 77.8
arahy.Tifrunner.gnm1.ann1.GJWA3D Arachis hypogaea HOM05D003051 ORTHO05D003932 8.8e-17 90.1 54 77.8
DCAR_009317 Daucus carota HOM05D003051 ORTHO05D003932 1.2e-16 89.7 54 77.8
Os02g0806900 Oryza sativa ssp. japonica HOM05D003051 ORTHO05D003932 1.2e-16 89.7 55 76.4
arahy.Tifrunner.gnm1.ann1.53VZ2L Arachis hypogaea HOM05D003051 ORTHO05D003932 1.5e-16 89.4 55 74.5
arahy.Tifrunner.gnm1.ann1.QNA1HW Arachis hypogaea HOM05D003051 ORTHO05D003932 1.5e-16 89.4 55 74.5
Nn3g21075 Nelumbo nucifera HOM05D003051 ORTHO05D003932 1.5e-16 89.4 54 79.6
PSO339G0046 Papaver somniferum HOM05D003051 ORTHO05D003932 1.5e-16 89.4 54 79.6
PSO384G5107 Papaver somniferum HOM05D003051 ORTHO05D003932 1.5e-16 89.4 54 79.6
PGR119G2325 Punica granatum HOM05D003051 ORTHO05D003932 1.5e-16 89.4 54 77.8
Zm00001eb010860 Zea mays HOM05D003051 ORTHO05D003932 2.0e-16 89.0 55 74.5
HPP92_014444 Vanilla planifolia HOM05D003051 ORTHO05D003932 3.4e-16 88.2 54 75.9
Oeu040325.1 Olea europaea HOM05D003051 ORTHO05D003932 4.4e-16 87.8 54 74.1
Hund25238 Selenicereus undatus HOM05D003051 ORTHO05D003932 9.8e-16 86.7 55 70.9
EL10Ac1g02184 Beta vulgaris HOM05D003051 ORTHO05D003932 2.2e-15 85.5 67 67.2
SEGI_33366 Sequoiadendron giganteum HOM05D003051 ORTHO05D003932 2.2e-15 85.5 56 69.6
Mapoly0025s0004 Marchantia polymorpha HOM05D003051 ORTHO05D003932 8.3e-15 83.6 56 67.9
Pp3c7_5350 Physcomitrium patens HOM05D003051 ORTHO05D003932 3.1e-14 81.6 56 66.1
SMO361G0305 Selaginella moellendorffii HOM05D003051 ORTHO05D003932 3.1e-14 81.6 57 63.2
TPR.G4848 Trifolium pratense HOM05D003051 ORTHO05D000113 3.1e-14 81.6 51 78.4
Ah.01g003510 Amaranthus hybridus HOM05D003051 ORTHO05D003932 4.1e-14 81.3 46 82.6
CSS0004660 Camellia sinensis var. sinensis HOM05D003051 ORTHO05D003932 4.1e-14 81.3 54 68.5
AagrBONN_evm.TU.Sc2ySwM_362.1674 Anthoceros agrestis HOM05D003051 ORTHO05D003932 5.4e-14 80.9 56 67.9
CSS0032175 Camellia sinensis var. sinensis HOM05D003051 ORTHO05D003932 7.0e-14 80.5 54 70.4
Lj7A426G51 Lonicera japonica HOM05D003051 ORTHO05D003932 1.2e-13 79.7 73 57.5
CSS0023289 Camellia sinensis var. sinensis HOM05D003051 ORTHO05D003932 2.0e-13 79.0 54 66.7
RcHm_v2.0_Chr4g0385711 Rosa chinensis HOM05D003051 ORTHO05D019772 3.5e-13 78.2 44 84.1
CSS0004006 Camellia sinensis var. sinensis HOM05D003051 ORTHO05D003932 1.3e-12 76.3 54 63.0
BolC1t00248H Brassica oleracea HOM05D003051 ORTHO05D003932 2.3e-12 75.5 49 67.3
Cre03.g146507 Chlamydomonas reinhardtii HOM05D003051 ORTHO05D003932 2.3e-12 75.5 57 57.9
arahy.Tifrunner.gnm1.ann1.3KE8SU Arachis hypogaea HOM05D003051 ORTHO05D019772 6.6e-12 73.9 44 79.5
CSS0013516 Camellia sinensis var. sinensis HOM05D003051 ORTHO05D003932 8.6e-12 73.6 59 61.0
CBR_g21746 Chara braunii HOM05D003051 ORTHO05D003932 3.6e-10 68.2 56 55.4
RcHm_v2.0_Chr4g0392541 Rosa chinensis HOM05D003051 ORTHO05D019772 1.0e-09 66.6 54 59.3
PRCOL_00000102 Prasinoderma coloniale HOM05D003051 ORTHO05D003932 3.4e-08 61.6 56 51.8
MCO09G764 Micromonas commoda HOM05D003078 ORTHO05D003545 7.5e-08 60.5 50 56.0
AT4G36480 Arabidopsis thaliana HOM05D003051 ORTHO05D003932 3.7e-07 58.2 36 61.1
AUR62006503 Chenopodium quinoa HOM05D003051 ORTHO05D003932 4.9e-07 57.8 32 78.1
SEGI_13307 Sequoiadendron giganteum HOM05D003051 ORTHO05D003932 6.3e-07 57.4 34 73.5
Haze_27103 Corylus avellana HOM05D003051 ORTHO05D003932 1.4e-06 56.2 59 44.1
Cfa022805 Carpinus fangiana HOM05D003051 ORTHO05D003932 9.2e-06 53.5 55 43.6


User provided reference genes

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