Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A336T44 Lonicera japonica HOM05D005935 ORTHO05D007012 4.4e-65 251.1 125 100.0
Hma1.2p1_0008F-1.1_g005750 Hydrangea macrophylla HOM05D005935 ORTHO05D007012 9.4e-52 206.8 107 93.5
Actinidia16851 Actinidia chinensis HOM05D005935 ORTHO05D007012 3.6e-51 204.9 106 93.4
DCAR_005416 Daucus carota HOM05D005935 ORTHO05D007012 8.0e-51 203.8 110 90.9
Glyma.19G228900 Glycine max HOM05D005935 ORTHO05D007012 1.0e-50 203.4 110 88.2
Phvul.001G225500 Phaseolus vulgaris HOM05D005935 ORTHO05D007012 1.4e-50 203.0 110 88.2
VMungo1383G1193 Vigna mungo HOM05D005935 ORTHO05D007012 1.4e-50 203.0 110 88.2
Lsat_1_v5_gn_5_102820 Lactuca sativa HOM05D005935 ORTHO05D007012 1.8e-50 202.6 114 87.7
HanXRQChr10g0299201 Helianthus annuus HOM05D005935 ORTHO05D007012 2.3e-50 202.2 107 90.7
MSTRG.27950 Avicennia marina HOM05D005935 ORTHO05D007012 3.0e-50 201.8 110 88.2
Glyma.03G231900 Glycine max HOM05D005935 ORTHO05D007012 3.0e-50 201.8 105 91.4
arahy.Tifrunner.gnm1.ann1.I9BDFC Arachis hypogaea HOM05D005935 ORTHO05D007012 4.0e-50 201.4 107 88.8
TWI36G1229 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 4.0e-50 201.4 107 91.6
GSVIVG01031220001 Vitis vinifera HOM05D005935 ORTHO05D007012 5.2e-50 201.1 110 88.2
arahy.Tifrunner.gnm1.ann1.7UDZ1N Arachis hypogaea HOM05D005935 ORTHO05D007012 6.7e-50 200.7 106 89.6
arahy.Tifrunner.gnm1.ann1.G5WI6L Arachis hypogaea HOM05D005935 ORTHO05D007012 6.7e-50 200.7 106 89.6
arahy.Tifrunner.gnm1.ann1.H1X696 Arachis hypogaea HOM05D005935 ORTHO05D007012 6.7e-50 200.7 106 89.6
CSS0047945 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 8.8e-50 200.3 103 92.2
ClCG02G015080 Citrullus lanatus HOM05D005935 ORTHO05D007012 8.8e-50 200.3 110 88.2
Cc02_g34830 Coffea canephora HOM05D005935 ORTHO05D007012 8.8e-50 200.3 107 89.7
MELO3C004198.2 Cucumis melo HOM05D005935 ORTHO05D007012 8.8e-50 200.3 110 88.2
CsaV3_2G006940 Cucumis sativus L. HOM05D005935 ORTHO05D007012 8.8e-50 200.3 110 88.2
Manes.09G175700 Manihot esculenta HOM05D005935 ORTHO05D007012 8.8e-50 200.3 110 89.1
SGA_v2.0_scaffold81G26126 Striga asiatica HOM05D005935 ORTHO05D007012 8.8e-50 200.3 111 86.5
Dinv24425 Davidia involucrata HOM05D005935 ORTHO05D007012 1.2e-49 199.9 107 89.7
Lalb_Chr18g0046051 Lupinus albus HOM05D005935 ORTHO05D007012 1.2e-49 199.9 106 89.6
Prupe.6G314900 Prunus persica HOM05D005935 ORTHO05D007012 1.2e-49 199.9 110 88.2
Sed0001365 Sechium edule HOM05D005935 ORTHO05D007012 1.2e-49 199.9 110 88.2
Migut.N01391 Erythranthe guttata HOM05D005935 ORTHO05D007012 1.5e-49 199.5 112 85.7
PGR031G1309 Punica granatum HOM05D005935 ORTHO05D007012 1.5e-49 199.5 110 86.4
Ah.06g188880 Amaranthus hybridus HOM05D005935 ORTHO05D007012 2.0e-49 199.1 110 87.3
Lj1g0021681 Lotus japonicus HOM05D005935 ORTHO05D007012 2.0e-49 199.1 110 87.3
EL10Ac4g09829 Beta vulgaris HOM05D005935 ORTHO05D007012 2.6e-49 198.7 109 88.1
SalBow3G1520 Salvia bowleyana HOM05D005935 ORTHO05D007012 2.6e-49 198.7 110 88.2
Eucgr.H03282 Eucalyptus grandis HOM05D005935 ORTHO05D007012 3.3e-49 198.4 110 88.2
SGA_v2.0_scaffold80G25879 Striga asiatica HOM05D005935 ORTHO05D007012 3.3e-49 198.4 110 86.4
THA.LOC104802776 Tarenaya hassleriana HOM05D005935 ORTHO05D007012 3.3e-49 198.4 107 88.8
MD04G1195100 Malus domestica HOM05D005935 ORTHO05D007012 5.7e-49 197.6 110 86.4
Atru.chr2.148 Acer truncatum HOM05D005935 ORTHO05D007012 7.5e-49 197.2 110 87.3
Cpa.g.sc48.144 Carica papaya HOM05D005935 ORTHO05D007012 7.5e-49 197.2 105 88.6
Gohir.A08G206600 Gossypium hirsutum HOM05D005935 ORTHO05D007012 7.5e-49 197.2 107 87.9
Gohir.D08G223300 Gossypium hirsutum HOM05D005935 ORTHO05D007012 7.5e-49 197.2 107 87.9
Gorai.004G237200 Gossypium raimondii HOM05D005935 ORTHO05D007012 7.5e-49 197.2 107 87.9
Os03g0831900 Oryza sativa ssp. japonica HOM05D005935 ORTHO05D007012 7.5e-49 197.2 115 83.5
Peaxi162Scf00673g00126 Petunia axillaris HOM05D005935 ORTHO05D007012 7.5e-49 197.2 112 85.7
Aa31LG5G16170 Aethionema arabicum HOM05D005935 ORTHO05D007012 1.3e-48 196.4 106 88.7
CDE11G0767 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 1.3e-48 196.4 112 85.7
Ca_09298_v3 Cicer arietinum L. HOM05D005935 ORTHO05D007012 1.3e-48 196.4 110 85.5
FvH4_6g07240 Fragaria vesca HOM05D005935 ORTHO05D007012 1.7e-48 196.1 111 87.4
RcHm_v2.0_Chr3g0456881 Rosa chinensis HOM05D005935 ORTHO05D007012 1.7e-48 196.1 111 87.4
Solyc01g100330.3 Solanum lycopersicum HOM05D005935 ORTHO05D007012 1.7e-48 196.1 112 85.7
Sopen01g043840 Solanum pennellii HOM05D005935 ORTHO05D007012 1.7e-48 196.1 112 85.7
ECA234G4853 Erigeron canadensis HOM05D005935 ORTHO05D007012 2.8e-48 195.3 104 91.3
Thecc.05G321000 Theobroma cacao HOM05D005935 ORTHO05D007012 2.8e-48 195.3 106 87.7
CAN.G1715.16 Capsicum annuum HOM05D005935 ORTHO05D007012 3.7e-48 194.9 112 84.8
Haze_04079 Corylus avellana HOM05D005935 ORTHO05D007012 3.7e-48 194.9 110 84.5
PGSC0003DMG400002806 Solanum tuberosum HOM05D005935 ORTHO05D007012 3.7e-48 194.9 112 84.8
CiPaw.07G028100 Carya illinoinensis HOM05D005935 ORTHO05D007012 4.8e-48 194.5 110 83.6
Potri.013G010300 Populus trichocarpa HOM05D005935 ORTHO05D007012 4.8e-48 194.5 105 87.6
CARHR080230 Cardamine hirsuta HOM05D005935 ORTHO05D007012 6.3e-48 194.1 110 84.5
FAN05G5324 Fragaria x ananassa HOM05D005935 ORTHO05D007012 6.3e-48 194.1 107 88.8
Lalb_Chr04g0260471 Lupinus albus HOM05D005935 ORTHO05D007012 6.3e-48 194.1 104 88.5
Medtr7g112060 Medicago truncatula HOM05D005935 ORTHO05D007012 6.3e-48 194.1 106 86.8
AL3G16500 Arabidopsis lyrata HOM05D005935 ORTHO05D007012 8.2e-48 193.7 107 86.0
CANSAT54G1507 Cannabis sativa HOM05D005935 ORTHO05D007012 8.2e-48 193.7 105 88.6
COL.COLO4_04140 Corchorus olitorius HOM05D005935 ORTHO05D007012 8.2e-48 193.7 106 86.8
FAN14G3557 Fragaria x ananassa HOM05D005935 ORTHO05D007012 8.2e-48 193.7 107 88.8
AT3G05760 Arabidopsis thaliana HOM05D005935 ORTHO05D007012 1.1e-47 193.4 107 86.0
Carub.0003s0513 Capsella rubella HOM05D005935 ORTHO05D007012 1.1e-47 193.4 107 86.0
Duzib128G1094 Durio zibethinus HOM05D005935 ORTHO05D007012 1.1e-47 193.4 106 86.8
TAR636G0846 Trochodendron aralioides HOM05D005935 ORTHO05D007012 1.1e-47 193.4 110 85.5
FAN02G1619 Fragaria x ananassa HOM05D005935 ORTHO05D007012 1.8e-47 192.6 107 87.9
FAN09G4449 Fragaria x ananassa HOM05D005935 ORTHO05D007012 1.8e-47 192.6 111 86.5
QL01p019294 Quercus lobata HOM05D005935 ORTHO05D007012 1.8e-47 192.6 105 86.7
Zm00001eb121760 Zea mays HOM05D005935 ORTHO05D007012 1.8e-47 192.6 111 82.0
Aqoxy2G00839 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 2.4e-47 192.2 106 88.7
BcaC05g29782 Brassica carinata HOM05D005935 ORTHO05D007012 2.4e-47 192.2 107 85.0
AUR62000683 Chenopodium quinoa HOM05D005935 ORTHO05D007012 2.4e-47 192.2 105 87.6
Sc09g0002670 Simmondsia chinensis HOM05D005935 ORTHO05D007012 2.4e-47 192.2 106 87.7
CDE05G0147 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 3.1e-47 191.8 112 83.0
Ciclev10002528m.g Citrus clementina HOM05D005935 ORTHO05D007012 3.1e-47 191.8 106 86.8
Mapoly0111s0002 Marchantia polymorpha HOM05D005935 ORTHO05D007012 3.1e-47 191.8 114 82.5
Psat3g013040 Pisum sativum HOM05D005935 ORTHO05D007012 3.1e-47 191.8 105 86.7
TAR362G1094 Trochodendron aralioides HOM05D005935 ORTHO05D007012 4.1e-47 191.4 110 85.5
BcaC05g30089 Brassica carinata HOM05D005935 ORTHO05D007012 5.3e-47 191.0 110 82.7
C05p61480 Brassica napus HOM05D002110 ORTHO05D007012 5.3e-47 191.0 110 82.7
BolC5t34806H Brassica oleracea HOM05D002110 ORTHO05D007012 5.3e-47 191.0 110 82.7
BraA05t22944Z Brassica rapa HOM05D002110 ORTHO05D007012 5.3e-47 191.0 110 82.7
Sp3g04650 Schrenkiella parvula HOM05D005935 ORTHO05D007012 5.3e-47 191.0 110 82.7
SEGI_34613 Sequoiadendron giganteum HOM05D005935 ORTHO05D007012 5.3e-47 191.0 109 86.2
TWI56G1463 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 5.3e-47 191.0 106 86.8
QL03p018299 Quercus lobata HOM05D005935 ORTHO05D007012 7.0e-47 190.7 105 86.7
PSO170G3047 Papaver somniferum HOM05D005935 ORTHO05D007012 1.6e-46 189.5 111 82.9
PSO357G0321 Papaver somniferum HOM05D005935 ORTHO05D007012 1.6e-46 189.5 111 82.9
PSO478G5244 Papaver somniferum HOM05D005935 ORTHO05D007012 2.0e-46 189.1 113 81.4
MD12G1207200 Malus domestica HOM05D005935 ORTHO05D007012 3.5e-46 188.3 110 84.5
ATR0767G209 Amborella trichopoda HOM05D005935 ORTHO05D007012 7.7e-46 187.2 109 83.5
Pp3c4_20180 Physcomitrium patens HOM05D005935 ORTHO05D007012 1.7e-45 186.0 102 86.3
unitig_21.g20172 Utricularia gibba HOM05D005935 ORTHO05D007012 2.2e-45 185.7 107 84.1
Aqoxy4G02482 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 8.5e-45 183.7 106 84.9
Nn3g21642 Nelumbo nucifera HOM05D005935 ORTHO05D007012 8.5e-45 183.7 109 83.5
Nitab4.5_0013342g0020 Nicotiana tabacum HOM05D000001 ORTHO05D004269 8.5e-45 183.7 104 87.5
Thhalv10022198m.g Eutrema salsugineum HOM05D005935 ORTHO05D007012 1.2e-43 179.9 124 74.2
TPR.G1633 Trifolium pratense HOM05D005935 ORTHO05D007012 8.0e-43 177.2 114 77.2
AagrBONN_evm.TU.Sc2ySwM_228.1845 Anthoceros agrestis HOM05D005935 ORTHO05D007012 3.0e-42 175.3 103 79.6
AagrBONN_evm.TU.Sc2ySwM_344.1201 Anthoceros agrestis HOM05D005935 ORTHO05D007012 3.0e-42 175.3 103 79.6
vmacro01555 Vaccinium macrocarpon HOM05D005935 ORTHO05D007012 3.0e-42 175.3 153 62.1
AagrBONN_evm.TU.Sc2ySwM_368.1862 Anthoceros agrestis HOM05D005935 ORTHO05D007012 1.2e-41 173.3 96 84.4
Nitab4.5_0000155g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 5.7e-41 171.0 112 77.7
Pp3c12_7700 Physcomitrium patens HOM05D005935 ORTHO05D007012 1.7e-40 169.5 110 76.4
Nitab4.5_0000368g0260 Nicotiana tabacum HOM05D005935 ORTHO05D007012 3.7e-40 168.3 109 78.0
HPP92_015241 Vanilla planifolia HOM05D005935 ORTHO05D007012 4.8e-40 167.9 109 77.1
SMO201G0167 Selaginella moellendorffii HOM05D005935 ORTHO05D007012 3.1e-39 165.2 101 73.3
AUR62005273 Chenopodium quinoa HOM05D005935 ORTHO05D007012 1.6e-38 162.9 105 77.1
CSS0009551 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 3.3e-36 155.2 110 73.6
Hund07136 Selenicereus undatus HOM05D005935 ORTHO05D007012 2.8e-35 152.1 114 70.2
CSS0024691 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 1.8e-34 149.4 116 69.8
RcHm_v2.0_Chr7g0179971 Rosa chinensis HOM05D005935 ORTHO05D007012 2.3e-34 149.1 98 73.5
Hund21747 Selenicereus undatus HOM05D005935 ORTHO05D007012 3.7e-32 141.7 86 76.7
Rhsim11G0094200 Rhododendron simsii HOM05D005935 ORTHO05D007012 6.3e-32 141.0 87 81.6
CSS0031844 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 3.3e-28 128.6 96 70.8
CSS0034550 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 3.6e-27 125.2 126 57.9
Nitab4.5_0007747g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 4.7e-27 124.8 69 87.0
Cre07.g341650 Chlamydomonas reinhardtii HOM05D005935 ORTHO05D007012 6.1e-27 124.4 103 59.2
Oeu013219.2 Olea europaea HOM05D005935 ORTHO05D007012 2.3e-26 122.5 130 56.9
Sabra13G0008800 Salix brachista HOM05D005935 ORTHO05D007012 4.0e-26 121.7 82 74.4
CBR_g38440 Chara braunii HOM05D005935 ORTHO05D007012 3.7e-24 115.2 66 77.3
FAN04G2955 Fragaria x ananassa HOM05D005935 ORTHO05D007012 1.7e-21 106.3 117 51.3
Actinidia35528 Actinidia chinensis HOM05D005935 ORTHO05D007012 1.7e-16 89.7 187 37.4
MCO03G264 Micromonas commoda HOM05D005935 ORTHO05D007012 8.6e-13 77.4 98 42.9
Zm00001eb180860 Zea mays HOM05D005935 ORTHO05D007012 3.7e-08 62.0 41 73.2
Zm00001eb307900 Zea mays HOM05D005935 ORTHO05D007012 1.1e-07 60.5 41 70.7
PRCOL_00000245 Prasinoderma coloniale HOM05D005935 ORTHO05D007012 7.1e-07 57.8 91 37.4
Cfa024511 Carpinus fangiana HOM05D005935 ORTHO05D007012 6.0e-06 54.7 104 28.8


User provided reference genes

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