Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0010878 Lotus japonicus HOM05D004763 ORTHO05D007492 0.0e+00 1222.2 631 100.0
Lj3g0020649 Lotus japonicus HOM05D004763 ORTHO05D007492 0.0e+00 1094.7 674 88.0
Glyma.13G342900 Glycine max HOM05D004763 ORTHO05D007492 1.1e-284 983.0 675 78.5
Medtr2g098510 Medicago truncatula HOM05D004763 ORTHO05D007492 2.6e-283 978.4 669 78.5
Lalb_Chr14g0372291 Lupinus albus HOM05D004763 ORTHO05D007492 1.1e-281 973.0 670 78.2
Phvul.005G150500 Phaseolus vulgaris HOM05D004763 ORTHO05D007492 1.4e-281 972.6 671 77.9
TPR.G18851 Trifolium pratense HOM05D004763 ORTHO05D007492 2.4e-281 971.8 661 78.2
Psat5g288480 Pisum sativum HOM05D004763 ORTHO05D007492 3.5e-280 968.0 671 77.5
arahy.Tifrunner.gnm1.ann1.P0K6XU Arachis hypogaea HOM05D004763 ORTHO05D007492 1.0e-279 966.5 668 77.8
arahy.Tifrunner.gnm1.ann1.VYK1P0 Arachis hypogaea HOM05D004763 ORTHO05D007492 6.6e-279 963.8 671 77.2
arahy.Tifrunner.gnm1.ann1.GN3GFY Arachis hypogaea HOM05D004763 ORTHO05D007492 2.5e-278 961.8 671 77.0
arahy.Tifrunner.gnm1.ann1.X75IXN Arachis hypogaea HOM05D004763 ORTHO05D007492 9.6e-278 959.9 709 72.8
VMungo1080G1755 Vigna mungo HOM05D004763 ORTHO05D007492 7.4e-270 933.7 642 78.0
Potri.003G211000 Populus trichocarpa HOM05D004763 ORTHO05D007492 1.8e-268 929.1 669 74.3
Manes.14G014500 Manihot esculenta HOM05D004763 ORTHO05D007492 2.4e-268 928.7 675 73.5
TAR623G1126 Trochodendron aralioides HOM05D004763 ORTHO05D007492 4.2e-265 917.9 675 73.0
CiPaw.14G125100 Carya illinoinensis HOM05D004763 ORTHO05D007492 5.5e-265 917.5 668 73.5
QL01p006243 Quercus lobata HOM05D004763 ORTHO05D007492 7.1e-265 917.1 676 73.1
TWI34G0672 Tripterygium wilfordii HOM05D004763 ORTHO05D007492 9.3e-265 916.8 675 73.0
Gorai.013G250000 Gossypium raimondii HOM05D004763 ORTHO05D007492 2.7e-264 915.2 665 73.1
MELO3C014639.2 Cucumis melo HOM05D004763 ORTHO05D007492 3.5e-264 914.8 673 72.7
CsaV3_4G023800 Cucumis sativus L. HOM05D004763 ORTHO05D007492 1.0e-263 913.3 673 72.4
Dinv36304 Davidia involucrata HOM05D004763 ORTHO05D007492 2.3e-263 912.1 675 72.6
Gohir.D13G219100 Gossypium hirsutum HOM05D004763 ORTHO05D007492 2.3e-263 912.1 665 72.8
Thecc.09G223100 Theobroma cacao HOM05D004763 ORTHO05D007492 2.3e-263 912.1 668 73.2
CSS0044360 Camellia sinensis var. sinensis HOM05D004763 ORTHO05D007492 2.5e-262 908.7 668 73.2
Hund22081 Selenicereus undatus HOM05D004763 ORTHO05D007492 2.5e-262 908.7 671 72.3
Gohir.A13G215400 Gossypium hirsutum HOM05D004763 ORTHO05D007492 7.4e-262 907.1 665 72.8
GSVIVG01025336001 Vitis vinifera HOM05D004763 ORTHO05D007492 9.6e-262 906.7 675 72.7
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 2.8e-261 905.2 675 72.3
Sc09g0000480 Simmondsia chinensis HOM05D004763 ORTHO05D007492 2.8e-261 905.2 672 71.3
Hma1.2p1_1169F.1_g263300 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 3.7e-261 904.8 669 73.1
Sed0013957 Sechium edule HOM05D004763 ORTHO05D007492 3.7e-261 904.8 672 72.6
Cc01_g04070 Coffea canephora HOM05D004763 ORTHO05D007492 1.4e-260 902.9 671 71.4
CANSAT54G1729 Cannabis sativa HOM05D004763 ORTHO05D007492 3.4e-259 898.3 674 73.4
Sabra03G0153800 Salix brachista HOM05D004763 ORTHO05D007492 2.2e-258 895.6 648 73.8
Sabra03G0156000 Salix brachista HOM05D004763 ORTHO05D007492 2.2e-258 895.6 648 73.8
Cpa.g.sc84.111 Carica papaya HOM05D004763 ORTHO05D007492 3.8e-258 894.8 699 69.7
Ciclev10014511m.g Citrus clementina HOM05D004763 ORTHO05D007492 1.1e-257 893.3 661 73.1
Nn7g36058 Nelumbo nucifera HOM05D004763 ORTHO05D007492 2.5e-257 892.1 672 71.7
HanXRQChr14g0451781 Helianthus annuus HOM05D004763 ORTHO05D007492 9.3e-257 890.2 677 70.3
Ah.04g161760 Amaranthus hybridus HOM05D004763 ORTHO05D007492 2.1e-256 889.0 626 74.6
Eucgr.B03662 Eucalyptus grandis HOM05D004763 ORTHO05D007492 3.5e-256 888.3 675 70.7
AUR62019250 Chenopodium quinoa HOM05D004763 ORTHO05D007492 3.0e-255 885.2 675 71.1
EL10Ac4g10318 Beta vulgaris HOM05D004763 ORTHO05D007492 9.7e-254 880.2 661 70.8
ECA238G4453 Erigeron canadensis HOM05D004763 ORTHO05D007492 2.2e-253 879.0 677 70.2
THA.LOC104816912 Tarenaya hassleriana HOM05D004763 ORTHO05D007492 2.8e-253 878.6 670 70.0
Prupe.6G018600 Prunus persica HOM05D004763 ORTHO05D007492 8.2e-253 877.1 687 70.3
Aqoxy1G00185 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 1.1e-252 876.7 673 70.1
MD03G1021100 Malus domestica HOM05D004763 ORTHO05D007492 1.8e-252 875.9 681 70.3
Solyc01g014490.4 Solanum lycopersicum HOM05D004763 ORTHO05D007492 3.1e-252 875.2 667 70.0
Sopen01g009200 Solanum pennellii HOM05D004763 ORTHO05D007492 5.3e-252 874.4 668 69.8
PSO339G3791 Papaver somniferum HOM05D004763 ORTHO05D007492 1.2e-251 873.2 676 71.4
COL.COLO4_09893 Corchorus olitorius HOM05D004763 ORTHO05D007492 1.0e-250 870.2 664 70.3
PGR102G0325 Punica granatum HOM05D004763 ORTHO05D007492 5.0e-250 867.8 675 70.4
AL3G34700 Arabidopsis lyrata HOM05D004763 ORTHO05D007492 6.5e-250 867.5 662 69.3
RcHm_v2.0_Chr5g0078101 Rosa chinensis HOM05D004763 ORTHO05D007492 3.6e-248 861.7 661 69.4
BcaC05g28282 Brassica carinata HOM05D004763 ORTHO05D007492 4.6e-248 861.3 665 68.6
FAN16G3272 Fragaria x ananassa HOM05D004763 ORTHO05D007492 4.6e-248 861.3 671 68.4
C05p43300 Brassica napus HOM05D004763 ORTHO05D007492 7.9e-248 860.5 665 68.4
Peaxi162Scf00773g00119 Petunia axillaris HOM05D004763 ORTHO05D007492 7.9e-248 860.5 679 68.2
FvH4_3g43550 Fragaria vesca HOM05D004763 ORTHO05D007492 1.0e-247 860.1 661 69.1
AT3G20780 Arabidopsis thaliana HOM05D004763 ORTHO05D007492 1.8e-247 859.4 662 69.0
Carub.0003s2074 Capsella rubella HOM05D004763 ORTHO05D007492 3.0e-247 858.6 662 68.6
Migut.D00558 Erythranthe guttata HOM05D004763 ORTHO05D007492 5.1e-247 857.8 673 68.9
Sp3g18800 Schrenkiella parvula HOM05D004763 ORTHO05D007492 8.8e-247 857.1 665 68.6
BcaB06g26148 Brassica carinata HOM05D004763 ORTHO05D007492 1.1e-246 856.7 668 68.3
Thhalv10020214m.g Eutrema salsugineum HOM05D004763 ORTHO05D007492 1.7e-245 852.8 665 68.3
A05p28000 Brassica napus HOM05D004763 ORTHO05D007492 5.3e-244 847.8 684 66.7
BolC5t33062H Brassica oleracea HOM05D004763 ORTHO05D007492 9.1e-244 847.0 693 65.9
Nitab4.5_0006575g0020 Nicotiana tabacum HOM05D004763 ORTHO05D007492 9.1e-244 847.0 688 67.7
HPP92_020536 Vanilla planifolia HOM05D004763 ORTHO05D007492 4.5e-243 844.7 667 67.5
Duzib150G1218 Durio zibethinus HOM05D004763 ORTHO05D007492 5.9e-243 844.3 688 67.7
BraA05t21683Z Brassica rapa HOM05D004763 ORTHO05D007492 1.7e-242 842.8 687 66.5
ATR0605G091 Amborella trichopoda HOM05D004763 ORTHO05D007492 1.6e-240 836.3 672 68.5
Nitab4.5_0003069g0050 Nicotiana tabacum HOM05D004763 ORTHO05D007492 2.3e-239 832.4 675 67.9
Os09g0279600 Oryza sativa ssp. japonica HOM05D004763 ORTHO05D007492 5.1e-239 831.2 648 68.1
SGA_v2.0_scaffold1G00797 Striga asiatica HOM05D004763 ORTHO05D007492 3.1e-236 822.0 733 63.3
CDE04G0998 Ceratophyllum demersum HOM05D004763 ORTHO05D007492 3.2e-233 812.0 639 68.2
Lsat_1_v5_gn_2_101121 Lactuca sativa HOM05D004763 ORTHO05D007492 8.8e-231 803.9 698 64.3
Ca_01270_v3 Cicer arietinum L. HOM05D004763 ORTHO05D007492 1.1e-230 803.5 597 74.0
Aa31LG8G7590 Aethionema arabicum HOM05D004763 ORTHO05D007492 8.2e-229 797.3 652 66.3
CARHR096610 Cardamine hirsuta HOM05D004763 ORTHO05D007492 7.5e-222 774.2 573 71.0
Actinidia39377 Actinidia chinensis HOM05D004763 ORTHO05D007492 4.8e-221 771.5 676 64.9
Aqoxy381s001 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 2.4e-220 769.2 633 66.7
AagrBONN_evm.TU.Sc2ySwM_344.3405 Anthoceros agrestis HOM05D004763 ORTHO05D007492 1.7e-218 763.1 636 63.8
Rhsim01G0189300 Rhododendron simsii HOM05D004763 ORTHO05D007492 2.2e-218 762.7 657 65.4
Pp3c22_12720 Physcomitrium patens HOM05D004763 ORTHO05D007492 2.4e-212 742.7 661 61.0
Atru.chr3.2503 Acer truncatum HOM05D004763 ORTHO05D007492 2.9e-210 735.7 582 67.7
SMO116G0144 Selaginella moellendorffii HOM05D004763 ORTHO05D007492 9.5e-209 730.7 652 61.5
DCAR_024396 Daucus carota HOM05D004763 ORTHO05D007492 1.6e-203 713.4 643 64.2
Mapoly0042s0060 Marchantia polymorpha HOM05D004763 ORTHO05D007492 5.0e-202 708.4 663 58.8
CBR_g31022 Chara braunii HOM05D004763 ORTHO05D007492 9.5e-201 704.1 672 57.7
Hma1.2p1_1169F.1_g263310 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 4.0e-191 672.2 509 70.3
FAN21G2003 Fragaria x ananassa HOM05D004763 ORTHO05D007492 9.8e-190 667.5 635 60.0
FAN11G2145 Fragaria x ananassa HOM05D004763 ORTHO05D007492 3.7e-189 665.6 665 58.8
FAN11G0713 Fragaria x ananassa HOM05D004763 ORTHO05D007492 9.2e-188 661.0 661 58.9
Potri.T085401 Populus trichocarpa HOM05D004763 ORTHO05D007492 4.7e-176 622.1 443 75.2
ClCG02G023620 Citrullus lanatus HOM05D004763 ORTHO05D007492 6.8e-175 618.2 371 84.6
MBI01_g15753_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D007492 3.8e-173 612.5 387 80.4
CAN.G646.1 Capsicum annuum HOM05D004763 ORTHO05D007492 7.6e-166 588.2 363 81.8
PGSC0003DMG401029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 1.9e-164 583.6 395 77.0
Cre01.g019750 Chlamydomonas reinhardtii HOM05D004763 ORTHO05D007492 7.6e-158 561.6 678 47.9
Zm00001eb308780 Zea mays HOM05D004763 ORTHO05D007492 2.1e-155 553.5 466 63.7
Lsat_1_v5_gn_1_127001 Lactuca sativa HOM05D004763 ORTHO05D007492 9.0e-143 511.5 550 55.3
MCO09G243 Micromonas commoda HOM05D004763 ORTHO05D007492 7.6e-142 508.4 666 46.5
Lj1A366T12 Lonicera japonica HOM05D004763 ORTHO05D007492 1.8e-138 497.3 367 71.7
PRCOL_00005940 Prasinoderma coloniale HOM05D004763 ORTHO05D007492 1.0e-133 481.5 635 45.5
SEGI_32015 Sequoiadendron giganteum HOM05D004763 ORTHO05D007492 2.4e-127 460.3 286 78.3
Lsat_1_v5_gn_1_127121 Lactuca sativa HOM05D004763 ORTHO05D007492 3.8e-125 453.0 603 49.1
Lju1319A4T15 Lonicera japonica HOM05D004763 ORTHO05D007492 4.4e-89 333.2 237 72.6
CAN.G442.1 Capsicum annuum HOM05D004763 ORTHO05D007492 6.1e-83 312.8 234 69.7
PGSC0003DMG402029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 4.0e-82 310.1 235 68.5
Actinidia06319 Actinidia chinensis HOM05D004763 ORTHO05D007492 8.0e-75 285.8 216 69.4
SEGI_39045 Sequoiadendron giganteum HOM05D004763 ORTHO05D007492 1.8e-74 284.6 216 68.1
Lsat_1_v5_gn_1_126981 Lactuca sativa HOM05D004763 ORTHO05D007492 3.4e-73 280.4 467 42.8
Lj1C366G5 Lonicera japonica HOM05D004763 ORTHO05D007492 8.9e-66 255.8 236 60.6
TPR.G29743 Trifolium pratense HOM05D004763 ORTHO05D007492 1.2e-59 235.3 220 62.3
Eucgr.B03660 Eucalyptus grandis HOM05D004763 ORTHO05D007492 3.4e-57 227.3 177 66.7
TPR.G29742 Trifolium pratense HOM05D004763 ORTHO05D007492 1.3e-56 225.3 241 56.0
Lju1319C4G3 Lonicera japonica HOM05D004763 ORTHO05D014896 9.3e-55 219.2 234 57.3
Oeu036968.1 Olea europaea HOM05D004763 ORTHO05D007492 6.9e-50 203.0 104 87.5
MBI09_g40619_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D019264 2.4e-34 151.4 108 69.4
MBI04_g09599_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D019264 3.1e-34 151.0 108 69.4
Lsat_1_v5_gn_1_126941 Lactuca sativa HOM05D004763 ORTHO05D007492 9.0e-34 149.4 181 48.6
MBI02_g24793_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D019264 2.6e-33 147.9 108 68.5
Thecc.03G073800 Theobroma cacao HOM05D004763 ORTHO05D019264 1.1e-31 142.5 129 60.5
Ca_01269_v3 Cicer arietinum L. HOM05D000073 ORTHO05D000033 1.6e-30 138.7 113 70.8
PGSC0003DMG400012096 Solanum tuberosum HOM05D004763 ORTHO05D014896 3.4e-25 120.9 86 73.3
PGSC0003DMG401017076 Solanum tuberosum HOM05D004763 ORTHO05D026177 5.0e-24 117.1 128 48.4
Lsat_1_v5_gn_1_127161 Lactuca sativa HOM05D004763 ORTHO05D007492 8.4e-24 116.3 142 48.6
Lsat_1_v5_gn_1_127201 Lactuca sativa HOM05D004763 ORTHO05D007492 8.4e-24 116.3 379 29.8
Aa31LG8G7550 Aethionema arabicum HOM05D004763 ORTHO05D007492 3.5e-22 110.9 446 30.5
arahy.Tifrunner.gnm1.ann1.F7UR4V Arachis hypogaea HOM05D004763 ORTHO05D014896 5.7e-20 103.6 67 82.1
arahy.Tifrunner.gnm1.ann1.G1IAFF Arachis hypogaea HOM05D004763 ORTHO05D014896 9.7e-20 102.8 82 69.5
arahy.Tifrunner.gnm1.ann1.50I1V9 Arachis hypogaea HOM05D004763 ORTHO05D014896 1.6e-19 102.1 67 80.6
Lju1319A4T14 Lonicera japonica HOM05D004763 ORTHO05D019264 4.1e-18 97.4 54 85.2
PGSC0003DMG400026817 Solanum tuberosum HOM05D004763 ORTHO05D026177 5.9e-17 93.6 82 65.9
Sopen04g015550 Solanum pennellii HOM05D000004 ORTHO05D000002 1.1e-15 89.4 96 58.3
Lsat_1_v5_gn_1_125620 Lactuca sativa HOM05D004763 ORTHO05D007492 7.9e-14 83.2 155 37.4
arahy.Tifrunner.gnm1.ann1.65KXHR Arachis hypogaea HOM05D004763 ORTHO05D014896 1.0e-13 82.8 48 87.5
TWI60G1170 Tripterygium wilfordii HOM05D004763 ORTHO05D014896 3.9e-13 80.9 49 85.7
arahy.Tifrunner.gnm1.ann1.YT3XVJ Arachis hypogaea HOM05D012186 ORTHO05D009594 7.4e-12 76.6 94 54.3
Solyc11g028310.3 Solanum lycopersicum HOM05D004763 ORTHO05D026177 2.2e-11 75.1 63 68.3
TPR.G18832 Trifolium pratense HOM05D006024 ORTHO05D007505 3.7e-11 74.3 44 77.3
Aa31LG8G7540 Aethionema arabicum HOM05D004763 ORTHO05D007492 2.0e-09 68.6 68 51.5
Solyc12g036030.1 Solanum lycopersicum HOM05D004763 ORTHO05D026177 2.6e-09 68.2 105 43.8
PGSC0003DMG400019106 Solanum tuberosum HOM05D004763 ORTHO05D007492 2.6e-09 68.2 37 83.8
PGSC0003DMG402017076 Solanum tuberosum HOM05D004763 ORTHO05D026177 4.2e-07 60.8 46 73.9
Solyc11g028340.3 Solanum lycopersicum HOM05D004763 ORTHO05D019264 5.5e-07 60.5 43 60.5


User provided reference genes

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