Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4C412G4 Lonicera japonica HOM05D000032 ORTHO05D023834 2.2e-42 175.3 89 100.0
Lj4C409G10 Lonicera japonica HOM05D000032 ORTHO05D004656 8.5e-39 163.3 84 98.8
Lj4C259T7 Lonicera japonica HOM05D000032 ORTHO05D004656 2.5e-30 135.2 115 68.7
Dinv38141 Davidia involucrata HOM05D000032 ORTHO05D004656 1.2e-27 126.3 81 82.7
Rhsim12G0189500 Rhododendron simsii HOM05D000032 ORTHO05D004656 1.2e-27 126.3 81 81.5
CSS0017805 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D004656 1.5e-27 125.9 81 81.5
CSS0039090 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D004656 1.5e-27 125.9 81 81.5
Cc00_g02780 Coffea canephora HOM05D000032 ORTHO05D004656 2.0e-27 125.6 82 80.5
Actinidia15976 Actinidia chinensis HOM05D000032 ORTHO05D004656 7.5e-27 123.6 85 75.3
Manes.04G109200 Manihot esculenta HOM05D000032 ORTHO05D004656 9.7e-27 123.2 81 80.2
Cpa.g.sc10.148 Carica papaya HOM05D000032 ORTHO05D004656 2.8e-26 121.7 81 80.2
CiPaw.02G158300 Carya illinoinensis HOM05D000032 ORTHO05D004656 2.8e-26 121.7 81 79.0
Cc11_g04450 Coffea canephora HOM05D000032 ORTHO05D004656 2.8e-26 121.7 82 79.3
Nn2g12173 Nelumbo nucifera HOM05D000032 ORTHO05D004656 2.8e-26 121.7 115 63.5
MD09G1222100 Malus domestica HOM05D000032 ORTHO05D004656 4.8e-26 120.9 81 79.0
QL11p013621 Quercus lobata HOM05D000032 ORTHO05D004656 4.8e-26 120.9 81 79.0
Atru.chr8.1321 Acer truncatum HOM05D000032 ORTHO05D004656 6.3e-26 120.6 81 79.0
CANSAT11G0059 Cannabis sativa HOM05D000032 ORTHO05D004656 6.3e-26 120.6 81 77.8
VMungo0540G1951 Vigna mungo HOM05D000032 ORTHO05D004656 6.3e-26 120.6 81 76.5
ClCG09G003100 Citrullus lanatus HOM05D000032 ORTHO05D004656 8.3e-26 120.2 81 76.5
MELO3C023444.2 Cucumis melo HOM05D000032 ORTHO05D004656 8.3e-26 120.2 81 76.5
CsaV3_7G032190 Cucumis sativus L. HOM05D000032 ORTHO05D004656 8.3e-26 120.2 81 76.5
THA.LOC104808200 Tarenaya hassleriana HOM05D000032 ORTHO05D004656 8.3e-26 120.2 115 62.6
Potri.004G224000 Populus trichocarpa HOM05D000032 ORTHO05D004656 1.1e-25 119.8 81 79.0
DCAR_027973 Daucus carota HOM05D000032 ORTHO05D004656 1.4e-25 119.4 74 82.4
Glyma.03G236700 Glycine max HOM05D000032 ORTHO05D004656 1.8e-25 119.0 81 76.5
Glyma.19G082800 Glycine max HOM05D000032 ORTHO05D004656 1.8e-25 119.0 81 76.5
Medtr1g095810 Medicago truncatula HOM05D000032 ORTHO05D004656 1.8e-25 119.0 82 75.6
Phvul.006G090900 Phaseolus vulgaris HOM05D000032 ORTHO05D004656 1.8e-25 119.0 81 74.1
GSVIVG01017454001 Vitis vinifera HOM05D000032 ORTHO05D004656 1.8e-25 119.0 115 62.6
Ciclev10025231m.g Citrus clementina HOM05D000032 ORTHO05D004656 2.4e-25 118.6 81 77.8
Haze_16601 Corylus avellana HOM05D000032 ORTHO05D004656 3.1e-25 118.2 81 75.3
CDE04G0965 Ceratophyllum demersum HOM05D000032 ORTHO05D004656 4.1e-25 117.9 81 77.8
Sc10g0008160 Simmondsia chinensis HOM05D000032 ORTHO05D004656 4.1e-25 117.9 81 75.3
TAR371G0629 Trochodendron aralioides HOM05D000032 ORTHO05D004656 4.1e-25 117.9 81 79.0
MD17G1216300 Malus domestica HOM05D000032 ORTHO05D004656 5.3e-25 117.5 81 76.5
Psat6g185640 Pisum sativum HOM05D000032 ORTHO05D004656 5.3e-25 117.5 81 75.3
Sed0025545 Sechium edule HOM05D000032 ORTHO05D004656 5.3e-25 117.5 81 74.1
arahy.Tifrunner.gnm1.ann1.N4SW4J Arachis hypogaea HOM05D000032 ORTHO05D004656 7.0e-25 117.1 81 75.3
Cfa020707 Carpinus fangiana HOM05D000032 ORTHO05D004656 7.0e-25 117.1 81 75.3
DCAR_013550 Daucus carota HOM05D000032 ORTHO05D004656 7.0e-25 117.1 74 79.7
vmacro16876 Vaccinium macrocarpon HOM05D000032 ORTHO05D004656 7.0e-25 117.1 82 73.2
Hma1.2p1_0461F.1_g157710 Hydrangea macrophylla HOM05D000032 ORTHO05D004656 1.2e-24 116.3 81 75.3
Ca_10589_v3 Cicer arietinum L. HOM05D000032 ORTHO05D004656 1.6e-24 115.9 81 75.3
TAR625G1442 Trochodendron aralioides HOM05D000032 ORTHO05D016780 1.6e-24 115.9 81 76.5
arahy.Tifrunner.gnm1.ann1.ANVQ0D Arachis hypogaea HOM05D000032 ORTHO05D004656 2.0e-24 115.5 81 75.3
Sabra01G0155100 Salix brachista HOM05D000032 ORTHO05D004656 2.7e-24 115.2 81 76.5
TWI75G1786 Tripterygium wilfordii HOM05D000032 ORTHO05D004656 2.7e-24 115.2 81 75.3
MSTRG.22761 Avicennia marina HOM05D000032 ORTHO05D004656 3.5e-24 114.8 115 59.1
PSO170G3458 Papaver somniferum HOM05D000032 ORTHO05D004656 3.5e-24 114.8 81 76.5
Prupe.3G092400 Prunus persica HOM05D000032 ORTHO05D004656 3.5e-24 114.8 81 74.1
PGR031G2134 Punica granatum HOM05D000032 ORTHO05D004656 5.9e-24 114.0 81 74.1
SGA_v2.0_scaffold5G02728 Striga asiatica HOM05D000032 ORTHO05D004656 5.9e-24 114.0 115 59.1
Aqoxy3G02660 Aquilegia oxysepala HOM05D000032 ORTHO05D004656 7.7e-24 113.6 83 71.1
ECA247G3654 Erigeron canadensis HOM05D000032 ORTHO05D004656 7.7e-24 113.6 81 71.6
FvH4_6g29290 Fragaria vesca HOM05D000032 ORTHO05D004656 7.7e-24 113.6 84 72.6
FAN02G4159 Fragaria x ananassa HOM05D000032 ORTHO05D004656 7.7e-24 113.6 84 72.6
FAN05G5503 Fragaria x ananassa HOM05D000032 ORTHO05D004656 7.7e-24 113.6 84 72.6
FAN14G0589 Fragaria x ananassa HOM05D000032 ORTHO05D004656 7.7e-24 113.6 84 72.6
Lsat_1_v5_gn_1_31320 Lactuca sativa HOM05D000032 ORTHO05D004656 7.7e-24 113.6 81 72.8
COL.COLO4_11860 Corchorus olitorius HOM05D000032 ORTHO05D004656 1.0e-23 113.2 81 74.1
PSO017G1422 Papaver somniferum HOM05D000032 ORTHO05D004656 1.0e-23 113.2 76 80.3
Lalb_Chr15g0077281 Lupinus albus HOM05D000032 ORTHO05D004656 1.3e-23 112.8 81 75.3
SHI11231 Sapria himalayana HOM05D000032 ORTHO05D004656 1.3e-23 112.8 81 75.3
HPP92_023291 Vanilla planifolia HOM05D000032 ORTHO05D004656 1.3e-23 112.8 81 74.1
Duzib160G0129 Durio zibethinus HOM05D000032 ORTHO05D004656 1.7e-23 112.5 115 59.1
Eucgr.J03085 Eucalyptus grandis HOM05D000032 ORTHO05D004656 1.7e-23 112.5 81 72.8
Lj2g0018361 Lotus japonicus HOM05D000032 ORTHO05D004656 1.7e-23 112.5 82 75.6
Oeu018799.1 Olea europaea HOM05D000032 ORTHO05D004656 1.7e-23 112.5 81 74.1
Peaxi162Scf00332g00130 Petunia axillaris HOM05D000032 ORTHO05D004656 1.7e-23 112.5 81 72.8
Thecc.10G138000 Theobroma cacao HOM05D000032 ORTHO05D004656 1.7e-23 112.5 115 59.1
Duzib235G1115 Durio zibethinus HOM05D000032 ORTHO05D004656 2.2e-23 112.1 115 58.3
Solyc03g117440.3 Solanum lycopersicum HOM05D000032 ORTHO05D004656 2.2e-23 112.1 84 72.6
Sopen03g036330 Solanum pennellii HOM05D000032 ORTHO05D004656 2.2e-23 112.1 84 72.6
Lalb_Chr18g0045691 Lupinus albus HOM05D000032 ORTHO05D004656 2.9e-23 111.7 81 72.8
RcHm_v2.0_Chr2g0134471 Rosa chinensis HOM05D000032 ORTHO05D004656 2.9e-23 111.7 84 71.4
Gohir.A05G122000 Gossypium hirsutum HOM05D000032 ORTHO05D004656 3.8e-23 111.3 81 71.6
Gohir.D05G122900 Gossypium hirsutum HOM05D000032 ORTHO05D004656 3.8e-23 111.3 81 71.6
Gorai.009G126600 Gossypium raimondii HOM05D000032 ORTHO05D004656 3.8e-23 111.3 81 71.6
HanXRQChr02g0034841 Helianthus annuus HOM05D000032 ORTHO05D004656 3.8e-23 111.3 81 71.6
PGSC0003DMG400014141 Solanum tuberosum HOM05D000032 ORTHO05D004656 3.8e-23 111.3 84 71.4
CAN.G1490.18 Capsicum annuum HOM05D000032 ORTHO05D004656 5.0e-23 110.9 83 72.3
Medtr1g026830 Medicago truncatula HOM05D000032 ORTHO05D004656 5.0e-23 110.9 81 71.6
Nitab4.5_0007970g0010 Nicotiana tabacum HOM05D000032 ORTHO05D004656 5.0e-23 110.9 83 72.3
Peaxi162Scf00207g00526 Petunia axillaris HOM05D000032 ORTHO05D004656 5.0e-23 110.9 83 72.3
Solyc06g068280.3 Solanum lycopersicum HOM05D000032 ORTHO05D004656 5.0e-23 110.9 83 72.3
Sopen06g025550 Solanum pennellii HOM05D000032 ORTHO05D004656 5.0e-23 110.9 83 72.3
unitig_62.g23590 Utricularia gibba HOM05D000032 ORTHO05D004656 6.5e-23 110.5 81 71.6
unitig_63.g29486 Utricularia gibba HOM05D000032 ORTHO05D004656 6.5e-23 110.5 81 71.6
Hund24822 Selenicereus undatus HOM05D000032 ORTHO05D004656 8.5e-23 110.2 82 70.7
PGSC0003DMG400028504 Solanum tuberosum HOM05D000032 ORTHO05D004656 1.9e-22 109.0 83 71.1
BcaB05g25266 Brassica carinata HOM05D000032 ORTHO05D004656 2.5e-22 108.6 82 67.1
CARHR073980 Cardamine hirsuta HOM05D000032 ORTHO05D004656 2.5e-22 108.6 84 70.2
A06p20060 Brassica napus HOM05D000032 ORTHO05D004656 3.2e-22 108.2 82 68.3
AT5G51280 Arabidopsis thaliana HOM05D000032 ORTHO05D004656 4.2e-22 107.8 84 70.2
Thhalv10018325m.g Eutrema salsugineum HOM05D000032 ORTHO05D004656 4.2e-22 107.8 84 70.2
Sp5g35330 Schrenkiella parvula HOM05D000032 ORTHO05D004656 4.2e-22 107.8 83 68.7
ATR0752G032 Amborella trichopoda HOM05D000032 ORTHO05D004656 5.5e-22 107.5 80 71.2
A07p45190 Brassica napus HOM05D000032 ORTHO05D004656 5.5e-22 107.5 82 68.3
C06p54040 Brassica napus HOM05D000032 ORTHO05D004656 5.5e-22 107.5 82 68.3
BolC6t40417H Brassica oleracea HOM05D000032 ORTHO05D004656 5.5e-22 107.5 82 68.3
BraA06t25092Z Brassica rapa HOM05D000032 ORTHO05D004656 5.5e-22 107.5 82 68.3
Nitab4.5_0000142g0470 Nicotiana tabacum HOM05D000032 ORTHO05D004656 5.5e-22 107.5 73 76.7
Aa31LG4G740 Aethionema arabicum HOM05D000032 ORTHO05D004656 7.2e-22 107.1 74 74.3
Ah.04g152980 Amaranthus hybridus HOM05D000032 ORTHO05D004656 7.2e-22 107.1 74 77.0
arahy.Tifrunner.gnm1.ann1.73KFHZ Arachis hypogaea HOM05D000032 ORTHO05D004656 7.2e-22 107.1 117 53.0
AL2G22300 Arabidopsis lyrata HOM05D000032 ORTHO05D004656 9.4e-22 106.7 84 69.0
AL8G25550 Arabidopsis lyrata HOM05D000032 ORTHO05D004656 9.4e-22 106.7 83 67.5
Carub.0002s2709 Capsella rubella HOM05D000032 ORTHO05D004656 9.4e-22 106.7 84 69.0
SEGI_04206 Sequoiadendron giganteum HOM05D000032 ORTHO05D004656 9.4e-22 106.7 76 73.7
BcaC03g15963 Brassica carinata HOM05D000032 ORTHO05D004656 1.6e-21 105.9 84 64.3
C02p37290 Brassica napus HOM05D000032 ORTHO05D004656 1.6e-21 105.9 84 64.3
BolC2t09739H Brassica oleracea HOM05D000032 ORTHO05D004656 1.6e-21 105.9 84 64.3
BraA07t32022Z Brassica rapa HOM05D000032 ORTHO05D004656 2.1e-21 105.5 82 67.1
EL10Ac3g06863 Beta vulgaris HOM05D000032 ORTHO05D004656 2.7e-21 105.1 84 66.7
Carub.0008s1131 Capsella rubella HOM05D000032 ORTHO05D004656 3.6e-21 104.8 85 65.9
CAN.G407.23 Capsicum annuum HOM05D000032 ORTHO05D004656 8.0e-21 103.6 74 74.3
AUR62015311 Chenopodium quinoa HOM05D000032 ORTHO05D004656 3.0e-20 101.7 74 74.3
AUR62020440 Chenopodium quinoa HOM05D000032 ORTHO05D004656 3.0e-20 101.7 74 74.3
Migut.I00580 Erythranthe guttata HOM05D000032 ORTHO05D004656 3.0e-20 101.7 74 71.6
Eucgr.C00570 Eucalyptus grandis HOM05D000032 ORTHO05D004656 3.0e-20 101.7 74 73.0
FvH4_3g15960 Fragaria vesca HOM05D000032 ORTHO05D004656 5.2e-20 100.9 85 64.7
FAN11G2357 Fragaria x ananassa HOM05D000032 ORTHO05D004656 5.2e-20 100.9 85 64.7
AagrBONN_evm.TU.Sc2ySwM_344.2880 Anthoceros agrestis HOM05D000032 ORTHO05D004656 1.2e-19 99.8 80 66.2
SMO244G0040 Selaginella moellendorffii HOM05D000032 ORTHO05D004656 3.4e-19 98.2 72 69.4
Pp3c25_520 Physcomitrium patens HOM05D000032 ORTHO05D004656 1.3e-18 96.3 80 65.0
Mapoly0164s0014 Marchantia polymorpha HOM05D000032 ORTHO05D004656 4.8e-18 94.4 71 69.0
MD17G1213800 Malus domestica HOM05D000032 ORTHO05D004656 1.1e-17 93.2 90 57.8
BcaB02g07268 Brassica carinata HOM05D000032 ORTHO05D004656 3.1e-17 91.7 107 52.3
A07p26690 Brassica napus HOM05D000032 ORTHO05D004656 9.1e-17 90.1 76 56.6
BraA07t30312Z Brassica rapa HOM05D000032 ORTHO05D004656 9.1e-17 90.1 76 56.6
Os06g0697200 Oryza sativa ssp. japonica HOM05D000032 ORTHO05D004656 2.0e-16 89.0 69 60.9
C06p29170 Brassica napus HOM05D000032 ORTHO05D040249 1.3e-15 86.3 65 66.2
BolC6t38081H Brassica oleracea HOM05D000032 ORTHO05D040249 1.3e-15 86.3 65 66.2
CBR_g3730 Chara braunii HOM05D000032 ORTHO05D004656 1.7e-15 85.9 71 63.4
C09p02220 Brassica napus HOM05D003848 ORTHO05D004616 1.2e-13 79.7 66 63.6
Nitab4.5_0004013g0020 Nicotiana tabacum HOM05D000032 ORTHO05D004656 1.2e-13 79.7 64 67.2
Dinv30635 Davidia involucrata HOM05D000032 ORTHO05D004656 1.6e-13 79.3 61 72.1
Potri.005G047301 Populus trichocarpa HOM05D000032 ORTHO05D004656 2.8e-13 78.6 73 67.1
TPR.G9410 Trifolium pratense HOM05D000032 ORTHO05D016780 5.7e-11 70.9 85 54.1
CARHR074110 Cardamine hirsuta HOM05D000032 ORTHO05D023834 6.3e-10 67.4 57 64.9
SMO347G0506 Selaginella moellendorffii HOM05D000032 ORTHO05D004656 1.2e-08 63.2 70 44.3
Atru.chr1.1802 Acer truncatum HOM05D000032 ORTHO05D004656 5.9e-08 60.8 39 76.9
Eucgr.I00150 Eucalyptus grandis HOM05D000032 ORTHO05D004656 1.3e-07 59.7 46 71.7
Hma1.2p1_1126F.1_g259650 Hydrangea macrophylla HOM05D000032 ORTHO05D004656 2.3e-07 58.9 67 46.3
EL10Ac3g06862 Beta vulgaris HOM05D000032 ORTHO05D023834 8.6e-07 57.0 59 50.8
PRCOL_00001922 Prasinoderma coloniale HOM05D000032 ORTHO05D004656 1.9e-06 55.8 72 37.5
AT4G33370 Arabidopsis thaliana HOM05D000032 ORTHO05D004656 2.5e-06 55.5 84 45.2
BcaC01g01559 Brassica carinata HOM05D000032 ORTHO05D016780 7.3e-06 53.9 53 58.5
BolC3t21611H Brassica oleracea HOM05D000032 ORTHO05D016780 7.3e-06 53.9 53 58.5
Nitab4.5_0002322g0020 Nicotiana tabacum HOM05D000032 ORTHO05D004656 9.5e-06 53.5 39 71.8


User provided reference genes

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