Gene: PGSC0003DMG400014141
General Information
Structural Information
- Species Solanum tuberosum
- Gene Identifier PGSC0003DMG400014141
- Transcript Identifier PGSC0003DMT400036663
- Gene Type Coding gene
- Location ST4.03ch03 : 57279477-57282171 : positive
Gene Family Information
- ID HOM05D000032
- #Genes/#Species 5307/100
- Phylogenetic origin
- ID ORTHO05D004656
- #Genes/#Species 174/99
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- pacid 37461098
- id PGSC0003DMG400014141.v4.03
- uniprot M1B405
Descriptions
- Description DEAD-box protein abstrakt
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016070 | ISO | PLAZA Integrative Orthology | RNA metabolic process | Solyc03g117440.3 |
| GO:0000398 | IBA IEA | GOA Database | mRNA splicing, via spliceosome | |
| GO:0000398 | IEA | InterPro | mRNA splicing, via spliceosome |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005524 | IEA | GOA Database | ATP binding | |
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0003723 | IBA | GOA Database | RNA binding | |
| GO:0003724 | IBA IEA | GOA Database | RNA helicase activity | |
| GO:0003724 | IEA | InterPro | RNA helicase activity | |
| GO:0008270 | IEA | GOA Database | zinc ion binding | |
| GO:0008270 | IEA | InterPro | zinc ion binding | |
| GO:0003676 | IEA | GOA Database | nucleic acid binding | |
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0016787 | IEA | GOA Database | hydrolase activity | |
| GO:0000166 | IEA | GOA Database | nucleotide binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005681 | IBA | GOA Database | spliceosomal complex |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR001650 | Helicase, C-terminal |
| IPR044113 | DDX41, DEAD-box helicase domain |
| IPR001878 | Zinc finger, CCHC-type |
| IPR011545 | DEAD/DEAH box helicase domain |
| IPR036875 | Zinc finger, CCHC-type superfamily |
| IPR014001 | Helicase superfamily 1/2, ATP-binding domain |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |