Gene: Solyc06g068280.3
General Information
Structural Information
- Species Solanum lycopersicum
- Gene Identifier Solyc06g068280.3
- Transcript Identifier Solyc06g068280.3.1
- Gene Type Coding gene
- Location SL4.0ch06 : 39945006-39948211 : negative
Gene Family Information
- ID HOM05D000032
- #Genes/#Species 5307/100
- Phylogenetic origin
- ID ORTHO05D004656
- #Genes/#Species 174/99
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid Solyc06g068280.3.1
- uniprot A0A3Q7GZX5
- gene_id Solyc06g068280
Descriptions
- Description RNA helicase DEAD20
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000398 | IBA IEA | GOA Database | mRNA splicing, via spliceosome | |
| GO:0000398 | IEA | InterPro | mRNA splicing, via spliceosome |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016787 | IEA | GOA Database | hydrolase activity | |
| GO:0003723 | IBA | GOA Database | RNA binding | |
| GO:0003724 | IBA IEA | GOA Database | RNA helicase activity | |
| GO:0003724 | IDA | Gene Ontology | RNA helicase activity | 1 |
| GO:0003724 | IEA | InterPro | RNA helicase activity | |
| GO:0008270 | IEA | GOA Database | zinc ion binding | |
| GO:0008270 | IEA | InterPro | zinc ion binding | |
| GO:0003676 | IEA | GOA Database | nucleic acid binding | |
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0005524 | IEA | GOA Database | ATP binding | |
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0000166 | IEA | GOA Database | nucleotide binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005681 | IBA | GOA Database | spliceosomal complex |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR001650 | Helicase, C-terminal |
| IPR001878 | Zinc finger, CCHC-type |
| IPR014001 | Helicase superfamily 1/2, ATP-binding domain |
| IPR044113 | DDX41, DEAD-box helicase domain |
| IPR036875 | Zinc finger, CCHC-type superfamily |
| IPR011545 | DEAD/DEAH box helicase domain |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |