Gene: Sopen03g036330
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen03g036330
- Transcript Identifier Sopen03g036330.1
- Gene Type Coding gene
- Location Spenn-ch03 : 71092365-71094736 : positive
Gene Family Information
- ID HOM05D000032
- #Genes/#Species 5307/100
- Phylogenetic origin
- ID ORTHO05D004656
- #Genes/#Species 174/99
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid Sopen03g036330.1
Descriptions
- Description DEAD-box protein abstrakt, putative | FUNCTIONS IN: helicase activity, zinc ion binding, ATP-dependent helicase activity, nucleic acid binding, ATP binding | LOCATED IN: cellular_component unknown | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif , DNA/RNA helicase, DEAD/DEAH box type, N-terminal , DEAD-like helicase, N-terminal , DNA/RNA helicase, C-terminal , Zinc finger, CCHC-type , Helicase, superfamily 1/2, ATP-binding domain | BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000398 | IEA | InterPro | mRNA splicing, via spliceosome | |
| GO:0016070 | ISO | PLAZA Integrative Orthology | RNA metabolic process | Solyc03g117440.3 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0008270 | IEA | InterPro | zinc ion binding | |
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0003724 | IEA | InterPro | RNA helicase activity |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR001650 | Helicase, C-terminal |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR001878 | Zinc finger, CCHC-type |
| IPR036875 | Zinc finger, CCHC-type superfamily |
| IPR011545 | DEAD/DEAH box helicase domain |
| IPR044113 | DDX41, DEAD-box helicase domain |
| IPR014001 | Helicase superfamily 1/2, ATP-binding domain |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |