Gene: Potri.004G224000
General Information
Structural Information
- Species Populus trichocarpa
- Gene Identifier Potri.004G224000
- Transcript Identifier Potri.004G224000.4
- Gene Type Coding gene
- Location Chr04 : 22882233-22884888 : positive
Gene Family Information
- ID HOM05D000032
- #Genes/#Species 5307/100
- Phylogenetic origin
- ID ORTHO05D004656
- #Genes/#Species 174/99
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- id Potri.004G224000.v4.1
- pacid 42795078
- synonym fgenesh4_pm.C_scaffold_86000007
Descriptions
- Description K13116 - ATP-dependent RNA helicase DDX41 [EC:3.6.4.13] (DDX41, ABS)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000398 | IEA | InterPro | mRNA splicing, via spliceosome | |
| GO:0016070 | ISO | PLAZA Integrative Orthology | RNA metabolic process | Solyc03g117440.3 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0008270 | IEA | InterPro | zinc ion binding | |
| GO:0003724 | IEA | InterPro | RNA helicase activity | |
| GO:0005524 | IEA | InterPro | ATP binding |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR001650 | Helicase, C-terminal |
| IPR014001 | Helicase superfamily 1/2, ATP-binding domain |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR001878 | Zinc finger, CCHC-type |
| IPR044113 | DDX41, DEAD-box helicase domain |
| IPR036875 | Zinc finger, CCHC-type superfamily |
| IPR011545 | DEAD/DEAH box helicase domain |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |